mRNA_13883 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A835ZAL5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL5_9STRA) HSP 1 Score: 489 bits (1259), Expect = 7.190e-172 Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 1
Query: 1 VPGSDEIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGGRGLPYGMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPYGXXXXXXXXASAXXXXXXYGXXXXXXXXXXXXXXXXXXXXXXGGYGAGAPGYSAPQAAGYAXXRAGAGGYDAAAAGAAQAGAPPPGQQPQYA 1002
VPGSDEIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGGRGLPYGMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPYGXXXXXXXXASAXXXXXXYGXXXXXXXXXXXXXXXXXXXXXXGGYGAGAPGYSAPQAAGYAXXRAGAGGYDAAAAGAAQAGAPPPGQQPQYA
Sbjct: 1 VPGSDEIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGGRGLPYGMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPYGXXXXXXXXASAXXXXXXYGXXXXXXXXXXXXXXXXXXXXXXGGYGAGAPGYSAPQAAGYAXXRAGAGGYDAAAAGAAQAGAPPPGQQPQYA 334
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A836CMD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD2_9STRA) HSP 1 Score: 291 bits (745), Expect = 5.970e-96 Identity = 144/174 (82.76%), Postives = 158/174 (90.80%), Query Frame = 1
Query: 16 EIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGK 537
E+DKD+D+ GK+FVG GISWQTS+ESLS +FSKFGALADVALMKDKYTGQPRGFGFIKFEDP+V+D VL Q EH+IDGR VDVKRAVPKSEAPGP+R R AD NKVFVGGLAPSVT AEFR YFEGFGAVSDAVVMFDRQT RSRGFGFVTFQ++SVVQNVLMGTHE+NG+
Sbjct: 14 ELDKDNDILGKIFVG---GISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVPKSEAPGPSRTARPADTNKVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMFDRQTLRSRGFGFVTFQEDSVVQNVLMGTHEINGE 184
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: D7FW71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW71_ECTSI) HSP 1 Score: 283 bits (723), Expect = 2.290e-88 Identity = 142/200 (71.00%), Postives = 169/200 (84.50%), Query Frame = 1
Query: 1 VPGSDEIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPA-RATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGG 597
+ GS DKD+DV GKLF+G GISWQT+EE L +HF K+G LAD+ALMKDKYTG PRGFGFIKFED +VLD +L+Q EH IDG+VVDVKRAVPKSEAPGP+ R++R A+ NK+FVGGLAP+V AEFR+YFE FG V DAVVMFDRQTQRSRGFGFVTFQ+++VV +++MGTHE+NGKMVEVK AEPKE+R +P G
Sbjct: 134 IAGSVAHDKDNDVEGKLFIG---GISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDITVLDEILSQ-EHKIDGKVVDVKRAVPKSEAPGPSSRSSRPAETNKIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVVHDIMMGTHEINGKMVEVKRAEPKENRSGRAPRG 329
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A6H5JV91_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV91_9PHAE) HSP 1 Score: 224 bits (572), Expect = 6.060e-68 Identity = 112/151 (74.17%), Postives = 131/151 (86.75%), Query Frame = 1
Query: 148 MKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPA-RATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGG 597
MKDKYTG PRGFGFIKFED +VLD +L+Q EH IDG+VVDVKRAVPKSEAPGP+ R++R A+ NK+FVGGLAP+V AEFR+YFE FG V DAVVMFDRQTQRSRGFGFVTFQ+++VV ++MGTHE+NGKMVEVK AEPKE+R +P G
Sbjct: 1 MKDKYTGHPRGFGFIKFEDVTVLDEILSQ-EHKIDGKVVDVKRAVPKSEAPGPSSRSSRPAETNKIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVVHEIMMGTHEINGKMVEVKRAEPKENRSGRAPRG 150
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A7S2XZ50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ50_9STRA) HSP 1 Score: 214 bits (545), Expect = 8.050e-64 Identity = 108/187 (57.75%), Postives = 136/187 (72.73%), Query Frame = 1
Query: 43 GKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGGR 603
GK+F+G G+SWQT+E+ L Y+F KFG L DVA+MKDK+TGQPRGFGF+ F+D SV++ VL Q H +DGR VD KRAV + E+ P + K+FVGGLAPSV +FR YF+ FG ++DAVVM DR T RSRGFGFVT+ DES V++VL G+HE+ GK VEVK AEP++ R P GGR
Sbjct: 5 GKVFIG---GVSWQTTEDGLRYYFEKFGELTDVAVMKDKFTGQPRGFGFVTFKDTSVVEKVLGQT-HTLDGRQVDCKRAVRREESSAPRGGGYGGESKKIFVGGLAPSVEEDDFRGYFDKFGTITDAVVMMDRNTGRSRGFGFVTYDDESSVRDVLAGSHEIKGKFVEVKRAEPRQDR---GPAGGR 184
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: F0WG76_9STRA (Uncharacterized protein AlNc14C88G5606 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG76_9STRA) HSP 1 Score: 215 bits (548), Expect = 1.050e-62 Identity = 112/201 (55.72%), Postives = 141/201 (70.15%), Query Frame = 1
Query: 43 GKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSE-APGPARATRQA------------DFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGGRG 606
GKLF+G G+SW+T+EE+L HF K+G L D ALMKDK++GQPRGFGF+ F D +VLD VL + H IDGR V+VKRA+P+ + A GP+ + KVFVGGL PSVT +FR+YFE FG ++DAVVMFDR+TQRSRGFGFVTF++E V V+ THEL+GK+VE+K AEPKE+R GG G
Sbjct: 102 GKLFIG---GVSWETTEETLRDHFGKYGPLTDAALMKDKFSGQPRGFGFVTFADVAVLDRVLEE-SHTIDGRTVEVKRAIPRDKTASGPSDVRSSGAHGRGNSGGVITESKKVFVGGLPPSVTEQDFRRYFEEFGRITDAVVMFDRETQRSRGFGFVTFEEEGAVAEVISKTHELHGKVVEIKRAEPKEARSGGGYSGGYG 298
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A7S3UWI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWI8_HETAK) HSP 1 Score: 205 bits (521), Expect = 1.010e-61 Identity = 100/184 (54.35%), Postives = 134/184 (72.83%), Query Frame = 1
Query: 22 DKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKES 573
++ +DVTGKLF+G G+SWQT+E+ L ++F KFG L D A+MKDK+TGQPRGFGF++FED S +D VLA+ EH IDGRV+D+K+A+ + AP + + D K+FVGGL +VT +F+ YF FG ++DAVVM DR T RSRGFGFVT+ D V V+ TH L K+VE+K AEP++S
Sbjct: 7 ERSNDVTGKLFLG---GVSWQTTEDGLKFYFEKFGKLKDCAVMKDKFTGQPRGFGFVQFEDASAVDKVLAE-EHTIDGRVLDIKKAISREHAP--RAISEKIDVKKIFVGGLEQAVTEGDFKDYFGKFGDITDAVVMMDRNTNRSRGFGFVTYADAESVNRVMNETHTLRDKVVEIKRAEPRDS 184
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A0P1AWA8_PLAHL (Heterogeneous nuclear ribonucleoprotein 1-like isoform x1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWA8_PLAHL) HSP 1 Score: 207 bits (527), Expect = 6.950e-61 Identity = 106/194 (54.64%), Postives = 135/194 (69.59%), Query Frame = 1
Query: 43 GKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSE-APGPA--RATRQA-------------DFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESR 576
GKLF+G G+SW+T+E++L HF K+GAL D ALMKDKYTGQPRGFGF+ F D S +D VL + H +DGR V+VKRA+P+ APG + R R + K+FVGGLAP++ +FR YFE FG ++DAVVM DR TQRSRGFGF+TF+DES V V+ HE++GK VE+K AEPKE+R
Sbjct: 127 GKLFIG---GVSWETTEDTLRQHFGKYGALTDAALMKDKYTGQPRGFGFVTFADASAIDRVLEET-HTLDGRSVEVKRAIPRERTAPGSSEFRGARSGYSSNGXXXXGIFTESKKIFVGGLAPTIAEQDFRHYFEEFGRITDAVVMIDRDTQRSRGFGFITFEDESSVAEVISKNHEIHGKSVEIKRAEPKEAR 316
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A484E761_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E761_BRELC) HSP 1 Score: 210 bits (535), Expect = 1.440e-60 Identity = 108/194 (55.67%), Postives = 138/194 (71.13%), Query Frame = 1
Query: 43 GKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSE-APGPA--RATR-------QADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPG 594
GKLF+G G+SW+T+E++L HF K+G L D ALMKDKYTGQPRGFGF+ F D +D VL + H +DGR V+VKRA+P+ APGP+ R R + K+FVGGLAP+V +FR YFE FG ++DAVVM DR TQRSRGFGF+TF+DES V V+ +HE++GK VE+K AEPKE+R +S G
Sbjct: 119 GKLFIG---GVSWETTEDTLRQHFGKYGVLTDAALMKDKYTGQPRGFGFVTFADALAIDRVLEET-HTLDGRSVEVKRAIPRERTAPGPSDFRGGRGNNSSGGYTEQKKIFVGGLAPTVAEEDFRHYFEEFGKITDAVVMIDRDTQRSRGFGFITFEDESSVVEVISKSHEIHGKTVEIKRAEPKEARAGSSTG 308
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A6G0XAN2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAN2_9STRA) HSP 1 Score: 208 bits (529), Expect = 3.080e-60 Identity = 110/208 (52.88%), Postives = 141/208 (67.79%), Query Frame = 1
Query: 43 GKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSE----------------APGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGGRGLPYG 618
GK+FVG G+SW+T+E++L HFS++G L D ALMKDKY+GQPRGFGF+ FEDPSV+D VL + HN+DGR V+VKRAVP+ + G + R + K+FVGGL P+VT +FR YFE FG ++DAVVM DR TQRSRGFGFV+F++E V V+ +HEL+GK+VE+K AEPK R GGRG G
Sbjct: 76 GKIFVG---GVSWETTEDNLRAHFSQYGNLTDAALMKDKYSGQPRGFGFVTFEDPSVVDRVLNET-HNLDGRNVEVKRAVPRDSMVGGRSGGPSTSGSGYSDGRSGGGRTIESKKIFVGGLPPTVTNEDFRSYFEDFGKITDAVVMMDRDTQRSRGFGFVSFEEEGAVAEVISKSHELHGKVVEIKRAEPKGEIR-----GGRGYDMG 274 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13883 ID=mRNA_13883|Name=jgi.p|Trimin1|155432|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1002bp|location=Sequence derived from alignment at Contig_159:267329..269075- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGCCTGGATCTGATGAAATAGACAAGGACAGCGACGTGACTGGCAAACTback to top protein sequence of jgi.p|Trimin1|155432 >Trimin1|155432|gw1.159.83.1 ID=Trimin1|155432|gw1.159.83.1|Name=jgi.p|Trimin1|155432|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=334bp VPGSDEIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMback to top mRNA from alignment at Contig_159:267329..269075- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13883 ID=mRNA_13883|Name=jgi.p|Trimin1|155432|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1747bp|location=Sequence derived from alignment at Contig_159:267329..269075- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_159:267329..269075- >mRNA_13883 ID=mRNA_13883|Name=jgi.p|Trimin1|155432|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1002bp|location=Sequence derived from alignment at Contig_159:267329..269075- (Tribonema minus UTEX_B_3156 )back to top |