Trimin1|353297|estExt_Genemark1.C_Ctg_1550014 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353297
Unique NameTrimin1|353297|estExt_Genemark1.C_Ctg_1550014
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length545
Homology
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BLAST of jgi.p|Trimin1|353297 vs. uniprot
Match: A0A835ZCG3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCG3_9STRA)

HSP 1 Score: 765 bits (1976), Expect = 4.540e-274
Identity = 544/544 (100.00%), Postives = 544/544 (100.00%), Query Frame = 0 
Query:    1 MHGITHATAVKMFSELPQSEQAQAQEGFARYVLGLAPRMKILELHPDQTAAVLELLRAEVGNVRGLVQLFNSRDTLTKLRTAEWGACVTDLSDRLYAREMLFDTESLRRLALTIFEEALGPKHYETATALDNLGTVLVGRGEPWATDGVPFFRRAATSREEALGALHEHTVLSRFKLAHTLRDLGKPAEAEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAQGKEAPAAAALLEXXXXXXXXXXXXXXXQTIKARQQLRKAQGRQYSLQSIAAAKNDNILRGDDTAMETLLAAFAVLASQRALPKPGWSLCRGLHYQVKPIVRFHLEGKWPSITVAHVLARKQVVHVELKNSWQEKEAGDIHMADMLKRVKSVSECNMSRNVFARIGDFTGLTVLDLSHFSVRNTPHLPEAICNIMGLETLRLKDWAAITRLPDSIVELQRLRTLDLGRASSNFKR 544
            MHGITHATAVKMFSELPQSEQAQAQEGFARYVLGLAPRMKILELHPDQTAAVLELLRAEVGNVRGLVQLFNSRDTLTKLRTAEWGACVTDLSDRLYAREMLFDTESLRRLALTIFEEALGPKHYETATALDNLGTVLVGRGEPWATDGVPFFRRAATSREEALGALHEHTVLSRFKLAHTLRDLGKPAEAEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAQGKEAPAAAALLEXXXXXXXXXXXXXXXQTIKARQQLRKAQGRQYSLQSIAAAKNDNILRGDDTAMETLLAAFAVLASQRALPKPGWSLCRGLHYQVKPIVRFHLEGKWPSITVAHVLARKQVVHVELKNSWQEKEAGDIHMADMLKRVKSVSECNMSRNVFARIGDFTGLTVLDLSHFSVRNTPHLPEAICNIMGLETLRLKDWAAITRLPDSIVELQRLRTLDLGRASSNFKR
Sbjct:    1 MHGITHATAVKMFSELPQSEQAQAQEGFARYVLGLAPRMKILELHPDQTAAVLELLRAEVGNVRGLVQLFNSRDTLTKLRTAEWGACVTDLSDRLYAREMLFDTESLRRLALTIFEEALGPKHYETATALDNLGTVLVGRGEPWATDGVPFFRRAATSREEALGALHEHTVLSRFKLAHTLRDLGKPAEAEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAQGKEAPAAAALLEXXXXXXXXXXXXXXXQTIKARQQLRKAQGRQYSLQSIAAAKNDNILRGDDTAMETLLAAFAVLASQRALPKPGWSLCRGLHYQVKPIVRFHLEGKWPSITVAHVLARKQVVHVELKNSWQEKEAGDIHMADMLKRVKSVSECNMSRNVFARIGDFTGLTVLDLSHFSVRNTPHLPEAICNIMGLETLRLKDWAAITRLPDSIVELQRLRTLDLGRASSNFKR 544
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BLAST of jgi.p|Trimin1|353297 vs. uniprot
Match: A0A836CKM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKM6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.210e-10
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 0 
Query:  466 MSRNVFARIGDFTGLTVLDLSHFSVRNTPHLPEAICNIMGLETLRLKDWAAITR 519
            MSRN+F RIGDFTGLTVLDL+H+ +R    LPE+I N+  LETL L +W AI R
Sbjct:    1 MSRNIFERIGDFTGLTVLDLNHYRLRTLSLLPESIGNLAALETLGLSEWKAIAR 54
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353297 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZCG3_9STRA4.540e-274100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CKM6_9STRA1.210e-1062.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 171..204
e-value: 0.46
score: 19.5
coord: 255..288
e-value: 41.0
score: 9.6
coord: 213..246
e-value: 0.011
score: 24.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 243..365
e-value: 1.7E-21
score: 78.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 68..240
e-value: 1.0E-33
score: 118.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 166..314
NoneNo IPR availablePFAMPF13374TPR_10coord: 212..249
e-value: 2.1E-10
score: 40.1
coord: 177..207
e-value: 0.0011
score: 18.7
NoneNo IPR availablePFAMPF13424TPR_12coord: 258..320
e-value: 2.3E-11
score: 43.8
NoneNo IPR availablePANTHERPTHR45783KINESIN LIGHT CHAINcoord: 235..349
coord: 106..240
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 460..537
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 426..543
e-value: 2.5E-10
score: 41.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_155contigContig_155:137188..142050 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353297mRNA_15841Tribonema minus UTEX_B_3156 mRNAContig_155 137188..142050 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353297|estExt_Genemark1.C_Ctg_1550014 ID=Trimin1|353297|estExt_Genemark1.C_Ctg_1550014|Name=jgi.p|Trimin1|353297|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=545bp
MHGITHATAVKMFSELPQSEQAQAQEGFARYVLGLAPRMKILELHPDQTA
AVLELLRAEVGNVRGLVQLFNSRDTLTKLRTAEWGACVTDLSDRLYAREM
LFDTESLRRLALTIFEEALGPKHYETATALDNLGTVLVGRGEPWATDGVP
FFRRAATSREEALGALHEHTVLSRFKLAHTLRDLGKPAEAEPVYRRALAV
AEQMAGPKSMDVAVTLDNLATALQVLGRYAEAEPLYRRALAISEEVLGPR
DLTTALFINNVGAVVGCLGEVAEAERLHRRALEIREAVGGPKHPDTAMSL
FNVGYILNAQGKEAPAAAALLERALEVYTEVLGKKHPQTIKARQQLRKAQ
GRQYSLQSIAAAKNDNILRGDDTAMETLLAAFAVLASQRALPKPGWSLCR
GLHYQVKPIVRFHLEGKWPSITVAHVLARKQVVHVELKNSWQEKEAGDIH
MADMLKRVKSVSECNMSRNVFARIGDFTGLTVLDLSHFSVRNTPHLPEAI
CNIMGLETLRLKDWAAITRLPDSIVELQRLRTLDLGRASSNFKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR032675LRR_dom_sf