mRNA_15140 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177419
Unique NamemRNA_15140
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|177419 vs. uniprot
Match: A0A835ZHD0_9STRA (Nucleotide-diphospho-sugar transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHD0_9STRA)

HSP 1 Score: 1075 bits (2780), Expect = 0.000e+0
Identity = 530/530 (100.00%), Postives = 530/530 (100.00%), Query Frame = 1
Query:    1 MKLRIQSWKHLVDSAESVEEGLRLIAHENVSDETVLPEPPTDVEMMSYIDTRRTFIIGFGMFSCLPLIIRLWLFTLVEPFFVPMALLVSSYLLVSYFAVAVWGRDMRYEDHELVLTMQKDYKPTVDIFLPNAGEPIEVLNNTFRYIAGLDWEREKLNVYVLDDGPRPHSVKSLANQYGFNYIRRPNPGHMKKAGNLRYAFTQTHGDIIIIFDADFTPRHDFLLHTVPYFNQYPKAAIVQTPQYFTVKPEQTWVERGAGSTQQLFYRLVQQNRQRFDATICVGSAAAYRRVALEPLGGTANIGFSKDVHTSFFLSDSGWVVRYLPLPMAKGTCPDRKKAFFTQNYRWATGSLMLTTSSGFWRSNLTLQQKVCYASGGAYYISTALSLFANAVPSIVLVLTRPHLVIWYNTLFAVPSLLFPFIAMRMWSTQHYGLESIRIRWLQYSAHLMALYDQIFGEHMVWVPTGAVGNSKNRRYNTAMAMLLHVTVAQMVMLYAGCAWRLAQGYMWYNFLPSLLMETINVLICFQVLYK 1590
            MKLRIQSWKHLVDSAESVEEGLRLIAHENVSDETVLPEPPTDVEMMSYIDTRRTFIIGFGMFSCLPLIIRLWLFTLVEPFFVPMALLVSSYLLVSYFAVAVWGRDMRYEDHELVLTMQKDYKPTVDIFLPNAGEPIEVLNNTFRYIAGLDWEREKLNVYVLDDGPRPHSVKSLANQYGFNYIRRPNPGHMKKAGNLRYAFTQTHGDIIIIFDADFTPRHDFLLHTVPYFNQYPKAAIVQTPQYFTVKPEQTWVERGAGSTQQLFYRLVQQNRQRFDATICVGSAAAYRRVALEPLGGTANIGFSKDVHTSFFLSDSGWVVRYLPLPMAKGTCPDRKKAFFTQNYRWATGSLMLTTSSGFWRSNLTLQQKVCYASGGAYYISTALSLFANAVPSIVLVLTRPHLVIWYNTLFAVPSLLFPFIAMRMWSTQHYGLESIRIRWLQYSAHLMALYDQIFGEHMVWVPTGAVGNSKNRRYNTAMAMLLHVTVAQMVMLYAGCAWRLAQGYMWYNFLPSLLMETINVLICFQVLYK
Sbjct:    1 MKLRIQSWKHLVDSAESVEEGLRLIAHENVSDETVLPEPPTDVEMMSYIDTRRTFIIGFGMFSCLPLIIRLWLFTLVEPFFVPMALLVSSYLLVSYFAVAVWGRDMRYEDHELVLTMQKDYKPTVDIFLPNAGEPIEVLNNTFRYIAGLDWEREKLNVYVLDDGPRPHSVKSLANQYGFNYIRRPNPGHMKKAGNLRYAFTQTHGDIIIIFDADFTPRHDFLLHTVPYFNQYPKAAIVQTPQYFTVKPEQTWVERGAGSTQQLFYRLVQQNRQRFDATICVGSAAAYRRVALEPLGGTANIGFSKDVHTSFFLSDSGWVVRYLPLPMAKGTCPDRKKAFFTQNYRWATGSLMLTTSSGFWRSNLTLQQKVCYASGGAYYISTALSLFANAVPSIVLVLTRPHLVIWYNTLFAVPSLLFPFIAMRMWSTQHYGLESIRIRWLQYSAHLMALYDQIFGEHMVWVPTGAVGNSKNRRYNTAMAMLLHVTVAQMVMLYAGCAWRLAQGYMWYNFLPSLLMETINVLICFQVLYK 530          
BLAST of jgi.p|Trimin1|177419 vs. uniprot
Match: A0A836CEU8_9STRA (Nucleotide-diphospho-sugar transferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEU8_9STRA)

HSP 1 Score: 765 bits (1976), Expect = 1.520e-274
Identity = 360/527 (68.31%), Postives = 438/527 (83.11%), Query Frame = 1
Query:   13 IQSWKHLVDSAESVEEGLRLIAHENVSDETVLPEPPTDVEMMSYIDTRRTFIIGFGMFSCLPLIIRLWLFTLVEPFFVPMALLVSSYLLVSYFAVAVWGRDMRYEDHELVLTMQKDYKPTVDIFLPNAGEPIEVLNNTFRYIAGLDWEREKLNVYVLDDGPRPHSVKSLANQYGFNYIRRPNPGHMKKAGNLRYAFTQTHGDIIIIFDADFTPRHDFLLHTVPYFNQYPKAAIVQTPQYFTVKPEQTWVERGAGSTQQLFYRLVQQNRQRFDATICVGSAAAYRRVALEPLGGTANIGFSKDVHTSFFLSDSGWVVRYLPLPMAKGTCPDRKKAFFTQNYRWATGSLMLTTSSGFWRSNLTLQQKVCYASGGAYYISTALSLFANAVPSIVLVLTRPHLVIWYNTLFAVPSLLFPFIAMRMWSTQHYGLESIRIRWLQYSAHLMALYDQIFGEHMVWVPTG-AVGNSKNRRYNTAMAMLLHVTVAQMVMLYAGCAWRLAQGYMWYNFLPSLLMETINVLICFQVLYK 1590
            ++SW +LV ++ ++EEGL LI  EN  D TVLP  PTDV+MMSY+DT+R FIIGFG+ SC+PL   LWLFT VEPFF P+ LL++ YL +SYFAV VWG+D  + DH+ +L    DY PTVDIFLP+ GEPIEV+ NTF ++A L W   KLNV+VLDDGPRP S+++LA QY F+Y+RRP+PG MKKAGNLR+AF  THGD+I+IFDADF PR DFL HTVPYF  YP   I+QTPQYFTVKP QTWVERGAGS Q+LFYR++QQNRQRF+ATICVGS A YRR AL+PLGGTAN+GFS+DV+T F L+D+GW V+YLPLP++ GTCPD KKAFFTQN+RWATGSLMLTTS+ FWRSNLT+ QK CYA+GG YY +TALS+F NA+P+IVLV TRPHLV+WYNT FA+PSLLFPF AMR+W+TQH+GLES+RIRWLQYSAHL+ALYD++ GE M W PTG + G +KN+RYN AMAMLLH+TV QM+ LY+GCAWR+AQG+  +NF+PSLL+ET NV +  QV +K
Sbjct:    4 VRSWAYLVSASSTLEEGLALIHRENSGDTTVLPSAPTDVQMMSYVDTKRAFIIGFGIVSCVPLCTGLWLFTSVEPFFAPVTLLITMYLFISYFAVGVWGKDCNFADHQKLLAECTDYTPTVDIFLPSCGEPIEVIQNTFNHVAKLKWHPLKLNVHVLDDGPRPKSIEALAKQYQFHYMRRPDPGRMKKAGNLRHAFGHTHGDVIVIFDADFCPREDFLEHTVPYFT-YPDICILQTPQYFTVKPMQTWVERGAGSVQELFYRVIQQNRQRFNATICVGSCAVYRRTALDPLGGTANVGFSEDVYTGFLLTDAGWRVKYLPLPLSMGTCPDDKKAFFTQNHRWATGSLMLTTSAEFWRSNLTVAQKCCYATGGLYYCATALSIFVNAMPAIVLVYTRPHLVLWYNTFFAIPSLLFPFCAMRVWNTQHFGLESVRIRWLQYSAHLIALYDKVAGEQMPWQPTGGSAGRTKNKRYNFAMAMLLHITVTQMLALYSGCAWRMAQGFPVHNFIPSLLVETFNVWVSLQVFWK 529          
BLAST of jgi.p|Trimin1|177419 vs. uniprot
Match: A0A835Z2T0_9STRA (Nucleotide-diphospho-sugar transferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2T0_9STRA)

HSP 1 Score: 755 bits (1949), Expect = 1.950e-270
Identity = 357/527 (67.74%), Postives = 430/527 (81.59%), Query Frame = 1
Query:   13 IQSWKHLVDSAESVEEGLRLIAHENVSDETVLPEPPTDVEMMSYIDTRRTFIIGFGMFSCLPLIIRLWLFTLVEPFFVPMALLVSSYLLVSYFAVAVWGRDMRYEDHELVLTMQKDYKPTVDIFLPNAGEPIEVLNNTFRYIAGLDWEREKLNVYVLDDGPRPHSVKSLANQYGFNYIRRPNPGHMKKAGNLRYAFTQTHGDIIIIFDADFTPRHDFLLHTVPYFNQYPKAAIVQTPQYFTVKPEQTWVERGAGSTQQLFYRLVQQNRQRFDATICVGSAAAYRRVALEPLGGTANIGFSKDVHTSFFLSDSGWVVRYLPLPMAKGTCPDRKKAFFTQNYRWATGSLMLTTSSGFWRSNLTLQQKVCYASGGAYYISTALSLFANAVPSIVLVLTRPHLVIWYNTLFAVPSLLFPFIAMRMWSTQHYGLESIRIRWLQYSAHLMALYDQIFGEHMVWVPTG-AVGNSKNRRYNTAMAMLLHVTVAQMVMLYAGCAWRLAQGYMWYNFLPSLLMETINVLICFQVLYK 1590
            +QSW HLV ++ ++EEGL LI  EN  D TVLP  PTD +MMSYIDT+R FI+GFG+ SC+PL + LWLFT VEPFF P+ALL+++YL +SYFAV VWG+DM ++DH+ +L    DY PTVD+FLP+ GEPIEV+ NTF ++A ++W+  KL V+VLDDG RP S+++LA QY FNYIRR NPGHMKKAGNLR+AF  T GD+I+IFDADF PR DFL HTVPYF  +P   IVQTPQYFTVKP QTWVERGAGS Q LFY L+QQNRQRF+ATICVGS A YRR AL PLGGTAN+GFS+D +T F L+D+GW V+YLPLP++ GTCPD KKAFFTQNYRW TGSLMLTTS+ FW SNLT  QK+CYA+GG YY +TALS+FANAVP+IVLV TRPHLV+WYN+LFA+PSLLFPF AMR W+T+ YG E +RIRWLQYSAHL+ALYD+  G+ M W  TG A G +KN+RYN A+AMLLHVT+ QM+ LY GCAWR+AQG+  YNFLPSLL+E+ NV +  QV +K
Sbjct:    4 VQSWAHLVSTSSTLEEGLALIHRENSGDTTVLPSAPTDAQMMSYIDTKRAFIVGFGIVSCVPLCVGLWLFTYVEPFFAPIALLITAYLFISYFAVGVWGKDMNFDDHQKLLAECSDYTPTVDVFLPSCGEPIEVIQNTFDHVARMEWDPSKLRVHVLDDGNRPKSIEALARQYHFNYIRRHNPGHMKKAGNLRHAFAHTDGDLIVIFDADFCPRKDFLQHTVPYFT-FPDVCIVQTPQYFTVKPTQTWVERGAGSIQVLFYCLIQQNRQRFNATICVGSCAVYRRTALAPLGGTANVGFSEDCYTGFLLTDAGWRVQYLPLPLSMGTCPDEKKAFFTQNYRWCTGSLMLTTSAEFWHSNLTAAQKMCYATGGLYYCATALSIFANAVPAIVLVYTRPHLVLWYNSLFALPSLLFPFCAMRAWNTEPYGFECVRIRWLQYSAHLVALYDRFAGQQMAWQATGGAAGKTKNQRYNLALAMLLHVTLVQMLALYVGCAWRVAQGFPLYNFLPSLLVESFNVWVALQVFWK 529          
BLAST of jgi.p|Trimin1|177419 vs. uniprot
Match: A0A835ZE48_9STRA (Nucleotide-diphospho-sugar transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE48_9STRA)

HSP 1 Score: 749 bits (1933), Expect = 5.280e-268
Identity = 356/527 (67.55%), Postives = 424/527 (80.46%), Query Frame = 1
Query:   13 IQSWKHLVDSAESVEEGLRLIAHENVSDETVLPEPPTDVEMMSYIDTRRTFIIGFGMFSCLPLIIRLWLFTLVEPFFVPMALLVSSYLLVSYFAVAVWGRDMRYEDHELVLTMQKDYKPTVDIFLPNAGEPIEVLNNTFRYIAGLDWEREKLNVYVLDDGPRPHSVKSLANQYGFNYIRRPNPGHMKKAGNLRYAFTQTHGDIIIIFDADFTPRHDFLLHTVPYFNQYPKAAIVQTPQYFTVKPEQTWVERGAGSTQQLFYRLVQQNRQRFDATICVGSAAAYRRVALEPLGGTANIGFSKDVHTSFFLSDSGWVVRYLPLPMAKGTCPDRKKAFFTQNYRWATGSLMLTTSSGFWRSNLTLQQKVCYASGGAYYISTALSLFANAVPSIVLVLTRPHLVIWYNTLFAVPSLLFPFIAMRMWSTQHYGLESIRIRWLQYSAHLMALYDQIFGEHMVWVPTG-AVGNSKNRRYNTAMAMLLHVTVAQMVMLYAGCAWRLAQGYMWYNFLPSLLMETINVLICFQVLYK 1590
            +QSW H++ ++ S+EEGL LI  EN  D TVLP  PTD +MMSY+DT+R FIIGFG+ SC+PL   LWLFT VEPFF PMALL+S YLL+SYF V VWG+D  Y DH+ +L    DY PTVD+FLP+ GEPIEV+ NTF  +A ++W   K  VY LDDGPRP S+++LA QY FNY+RRP+PGHMKKAGNL YAF  T GD+I+IFDADF PR DFL HTVPYF  YP   I+QTPQYF VKP QTWVERGAGS Q+ FYR++QQNRQRF+ATICVGS A YRR AL+PLGGTAN+G+S+D +T F L+++GW V+YLPLP++ GTCPD KKAFFTQNYRW TGSLMLTTS+ FW S LT  QK+CYA+GG YY +TALS+F NAVP+I+LV TRPHLV+WYNT FA+PSLLFPF AMR W+TQH+G E IRIRWLQYSAHL+ALYD+  G+ M W  TG A G +KN+RYN AMAMLLHVT+AQM+ LYAGCA R+AQGY +YNFLPSLL+ET NV +  QV +K
Sbjct:    4 VQSWAHIIKASSSLEEGLSLIHQENSGDTTVLPSAPTDEQMMSYVDTKRAFIIGFGIISCVPLCTGLWLFTSVEPFFAPMALLMSVYLLISYFGVGVWGKDFIYTDHQKLLAECTDYTPTVDVFLPSCGEPIEVIQNTFSLVAKMNWYPNKFKVYALDDGPRPKSIEALAKQYKFNYMRRPDPGHMKKAGNLMYAFAHTDGDLIVIFDADFCPRTDFLEHTVPYFT-YPDVCILQTPQYFRVKPTQTWVERGAGSIQEGFYRIIQQNRQRFNATICVGSCAVYRRTALDPLGGTANVGYSEDCYTGFLLTNAGWRVQYLPLPLSMGTCPDEKKAFFTQNYRWCTGSLMLTTSAEFWHSRLTRAQKMCYATGGLYYSATALSIFVNAVPAIILVYTRPHLVMWYNTFFALPSLLFPFCAMRAWNTQHFGFECIRIRWLQYSAHLVALYDKFAGDRMAWQSTGGAAGKTKNKRYNFAMAMLLHVTLAQMLALYAGCAMRIAQGYPFYNFLPSLLVETFNVYVALQVFWK 529          
BLAST of jgi.p|Trimin1|177419 vs. uniprot
Match: A0A835Z5C3_9STRA (Nucleotide-diphospho-sugar transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5C3_9STRA)

HSP 1 Score: 622 bits (1604), Expect = 5.360e-218
Identity = 300/531 (56.50%), Postives = 396/531 (74.58%), Query Frame = 1
Query:    1 MKLRIQSWKHLVDSAESVEEGLRLIAHENVSDETVLPEPPTDVEMMSYIDTRRTFIIGFGMFSCLPLIIRLWLFTLVEPFFVPMALLVSSYLLVSYFAVAVWGRDMRYEDHELVLTMQKDYKPTVDIFLPNAGEPIEVLNNTFRYIAGLDWEREKLNVYVLDDGPRPHSVKSLANQYGFNYIRRPNPGHMKKAGNLRYAFTQTHGDIIIIFDADFTPRHDFLLHTVPYFNQYPKAAIVQTPQYFTVKPEQTWVERGAGSTQQLFYRLVQQNRQRFDATICVGSAAAYRRVALEPLGGTANIGFSKDVHTSFFLSDSGWVVRYLPLPMAKGTCPDRKKAFFTQNYRWATGSLMLTTSSGFWRSNLTLQQKVCYASGGAYYISTALSLFANAVPSIVLVLTRPHLVIWYNTLFAVPSLLFPFIAMRMWSTQHYGLESIRIRWLQYSAHLMALYDQIFGEHMVWVPTGAVGNSKNR-RYNTAMAMLLHVTVAQMVMLYAGCAWRLAQGYMWYNFLPSLLMETINVLICFQVLYK 1590
            M  R+QSW  L+D++E+VEEGLRL+  EN+S+ ++LP PPTD++M+SY+DT+R++I+GFGM S LPL + LWLF +V P +     L++SYL+V+YF +A+WGRD++ EDH   L      +P VD++LP  GE ++VL NT+ Y++ LDW  +KLNVY+LDDG RP SVK+L +Q+GF YIRRP+ G  KKAGNLR+AF  T G++I++ DADF PR DFL  TVPYF +YP  AI+QTPQ+F V   Q W+ER AGS Q+LFYRLVQQNRQRF+A++CVGS A YRR ALEP GGTA +  S+DV T F +++ G+ VRYLPL ++ G CPD   A+F+QN RW  GS+ LTTS  FW+SNL   QK+ Y SG  YY +TALS+F+NA+P I LV  RP LV W+N  FAVPSLLFP++AMR+W+   YG E  RIR++QYSAHL A+ D++ G H  WVPTGA  +S  R ++NTAM+ LLHVTV Q+V+L+ GC WR AQ Y +YNF+PSLL+E+ N  +  QV +K
Sbjct:    1 MSPRVQSWCRLLDASETVEEGLRLLHKENLSEPSLLPVPPTDMQMLSYVDTKRSYIVGFGMLSSLPLSVGLWLFAIVAPVYAIFTALITSYLMVTYFGIAIWGRDLKMEDHLNCLDEFGHLRPRVDVYLPCCGESMDVLQNTYHYVSQLDWPCDKLNVYILDDGNRPSSVKALVHQFGFRYIRRPDVGVSKKAGNLRHAFANTTGELILVLDADFVPRSDFLKQTVPYFYKYPDVAILQTPQFFQVSSGQHWIERAAGSIQELFYRLVQQNRQRFNASVCVGSCAVYRRKALEPHGGTALVLQSEDVFTGFLITNDGYKVRYLPLNLSMGQCPDTASAYFSQNMRWCGGSIALTTSRQFWQSNLLPAQKMAYFSGCLYYTATALSVFSNALPGIYLVFMRPALVYWFNIFFAVPSLLFPYLAMRLWNHAPYGFECNRIRYIQYSAHLFAIKDRVCGTHTAWVPTGATTSSPKRGKFNTAMSFLLHVTVIQLVVLFCGCVWR-AQEYPFYNFIPSLLLESFNTFVVMQVFHK 530          
BLAST of jgi.p|Trimin1|177419 vs. uniprot
Match: A0A836CCW4_9STRA (Nucleotide-diphospho-sugar transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCW4_9STRA)

HSP 1 Score: 532 bits (1370), Expect = 1.970e-182
Identity = 275/520 (52.88%), Postives = 352/520 (67.69%), Query Frame = 1
Query:   49 SVEEGLRLIAHENVSDE--TVLPEPPTDVEMMSYIDTRRTFIIGFGMFSCLPLIIRLWLFTLVEPFFVPMALLVSSYLLVSYFAVAVWGRDMRYEDHELVLTMQKDYK---PTVDIFLPNAGEPIEVLNNTFRYIAGLDWEREKLNVYVLDDGPRPHS-VKSLANQYGFNYIRRPNPGHMKKAGNLRYAFTQTHGDIIIIFDADFTPRHDFLLHTVPYFNQYPKAAIVQTPQYFTVKPEQTWVERGAGSTQQLFYRLVQQNRQRFDATICVGSAAAYRRVALEPLGGTANIGFSKDVHTSFFLSDSGWVVRYLPLPMAKGTCPDRKKAFFTQNYRWATGSLMLTTSSGFWRSNLTLQQKVCYASGGAYYISTALSLFANAVPSIVLVLTRPHLVIWYNTLFAVPSLLFPFIAMRMWSTQHYGLESIRIRWLQYSAHLMALYDQIFGEHMVWVPTGAVG----NSKNRRYNTAMAMLLHVTVAQMVMLYAGCAWRLAQGYMWYNFLPSLLMETINVLICFQ 1578
            + EEGL L+A E        VLP PP D EM+SY+D  R  ++  G+ + LPL + LWL+T VE +F P+ALL + YLLVSYF V +WGR      H   L    +     P+VD+FLP  GEP +VL N + ++A L W    L V+VLDDG R  + V+++A ++GF Y+RR +PG MKKAGNLR AF +THG+ I I DADF PR DFL  TVP        AIVQ+PQ+F V P   WVER AGS Q+LF+RLVQQNR RFDA ICVGS   YRR AL P+GGTA  G S+DV T    +  GW VRYLPL +A G CPD ++A+F QNYRW  GS+ LTTS  FW S LT  QK+CY +G  YY STALSL ANA P+I LVL RP +V +YN+L+AVPS+LFP++ MR+W+   YG+E +RIR+LQYSAHL A++D  FG    WVPTGA G      ++ ++  AM+ LL  TVAQ++ LYAGCA+R+A+GY WY+F PS+ +ET++  +C Q
Sbjct:   14 TAEEGLALLADELTKGPGAAVLPVPPDDEEMLSYLDAGRALVVSAGVAAVLPLSVGLWLYTAVEVWFAPVALLTTGYLLVSYFGVGLWGRRFDAHAHAEALARASEAPSGPPSVDVFLPCCGEPADVLANAYEHVAALRWGGP-LAVHVLDDGARASAAVEAMARRHGFRYVRRGDPGRMKKAGNLRSAFARTHGEFIAILDADFCPRPDFLQQTVPLMVDDAGIAIVQSPQWFRVSPSMNWVERAAGSVQELFHRLVQQNRDRFDAAICVGSCGVYRRAALAPMGGTAEKGASEDVWTGVLTTCDGWRVRYLPLILATGLCPDSRRAYFKQNYRWCLGSIALTTSREFWTSPLTATQKMCYLTGAGYYASTALSLVANAAPAISLVLLRPDMVRYYNSLWAVPSVLFPWVIMRIWARHPYGVECLRIRYLQYSAHLFAIWDHCFGTATAWVPTGAAGAGTQGRRDSQFRRAMSFLLLTTVAQLLALYAGCAYRIAEGYAWYDFAPSVAIETLSAFLCAQ 532          
BLAST of jgi.p|Trimin1|177419 vs. uniprot
Match: A0A6A6VRX0_9PEZI (Nucleotide-diphospho-sugar transferase n=1 Tax=Pseudovirgaria hyperparasitica TaxID=470096 RepID=A0A6A6VRX0_9PEZI)

HSP 1 Score: 437 bits (1123), Expect = 2.100e-144
Identity = 232/500 (46.40%), Postives = 315/500 (63.00%), Query Frame = 1
Query:  103 VLPEPPTDVEMMSYIDTRRTFIIGFGMFSCLPLIIRLWLFTLVE-PF--FVPMALLVSSYLLVSYFAVAVWGRDMRYEDHELVLT---MQKDYKPTVDIFLPNAGEPIEVLNNTFRYIAGLDWEREKLNVYVLDDGPRPHSVKSLANQYGFNYIRRPNPGHMKKAGNLRYAFTQTHGDIIIIFDADFTPRHDFLLHTVPYFNQYPKAAIVQTPQYFTVKPEQTWVERGAGSTQQLFYRLVQQNRQRFDATICVGSAAAYRRVALEPLGGTANIGFSKDVHTSFFLSDSGWVVRYLPLPMAKGTCPDRKKAFFTQNYRWATGSLMLTTSSGFWRSNLTLQQKVCYASGGAYYISTALSLFANAVPSIVLVLTRPHLVIWYNTLFAVPSLLFPFIAMRMWSTQHYGLESIRIRWLQYSAHLMALYDQIFGEHMVWVPTGAVGNSKNRRYNTAMAMLLHVTVAQMVMLYAGCAWRLAQGYMWYNFLPSLLMETINVLICFQVL 1584
            +LP  PTDVE +SY+ T R F+  FG  S L L   +WLF +   PF  F  M +L+  YL VSY AV++ G+D  YE H+  L    +  +  PTVDI+LP   EPIEVL NT++++  L +  +KL VYVLDDG    +VK+LA QYGF YI R +   +KKAGNLR+AF +T GD   I+DADF PR DFL+  +P     P+AAI+QTPQ+F +K EQTWVE+GAG+ Q+LFYR++Q NR RF A+ICVGS A YRR AL  +GGTA IGFS+DVHT F+    GW V+Y+PL +A G CPD  +AFF+Q  RW  GS  L T+  FW S L+L QK+CY SG  YY + +LS+F N +P I+++  RP  V +YN  FAVPS+L+  +A+R+W+   YGL    +  +Q  A+  A+ D++FG  + WVP+G     KN +Y     M      +    L AG  +++ +G  WY+  P L +   N  +  + L
Sbjct:   84 ILPSGPTDVEKVSYLKTNRLFLYTFGCLSFLSLSAGMWLFVVSSIPFYWFGLMVVLLQCYLFVSY-AVSICGKDWDYEAHKKTLEDHPVTPETAPTVDIYLPCCKEPIEVLENTYKHVTELIYPPDKLKVYVLDDGA-DEAVKTLAEQYGFTYILRDDRPRLKKAGNLRWAFARTSGDFFNIYDADFCPRPDFLMEIIPEHIANPRAAIIQTPQFFRIKDEQTWVEQGAGAVQELFYRVIQVNRNRFGASICVGSNAVYRRQALVEVGGTAEIGFSEDVHTGFYALTRGWQVKYVPLCLACGICPDTPRAFFSQQMRWCMGSTTLLTNPDFWTSPLSLMQKICYLSGMMYYSAISLSIFLNPLPGILMIWVRPEYVRYYNLAFAVPSILYSLLAIRVWAKASYGLNVQFVMMIQSFAYFTAIKDRLFGRALAWVPSGDTKAHKNNKYRNMRIMAWVWMCSASGALIAGTTYQVLRGMKWYDCFPVLCLTAFNFFLAHRFL 581          
BLAST of jgi.p|Trimin1|177419 vs. uniprot
Match: M3A7Q6_PSEFD (Glycosyltransferase family 2 protein (Fragment) n=1 Tax=Pseudocercospora fijiensis (strain CIRAD86) TaxID=383855 RepID=M3A7Q6_PSEFD)

HSP 1 Score: 431 bits (1108), Expect = 4.230e-143
Identity = 229/500 (45.80%), Postives = 309/500 (61.80%), Query Frame = 1
Query:  103 VLPEPPTDVEMMSYIDTRRTFIIGFGMFSCLPLIIRLWLFTLVEP---FFVPMALLVSSYLLVSYFAVAVWGRDMRYEDHELVLT---MQKDYKPTVDIFLPNAGEPIEVLNNTFRYIAGLDWEREKLNVYVLDDGPRPHSVKSLANQYGFNYIRRPNPGHMKKAGNLRYAFTQTHGDIIIIFDADFTPRHDFLLHTVPYFNQYPKAAIVQTPQYFTVKPEQTWVERGAGSTQQLFYRLVQQNRQRFDATICVGSAAAYRRVALEPLGGTANIGFSKDVHTSFFLSDSGWVVRYLPLPMAKGTCPDRKKAFFTQNYRWATGSLMLTTSSGFWRSNLTLQQKVCYASGGAYYISTALSLFANAVPSIVLVLTRPHLVIWYNTLFAVPSLLFPFIAMRMWSTQHYGLESIRIRWLQYSAHLMALYDQIFGEHMVWVPTGAVGNSKNRRYNTAMAMLLHVTVAQMVMLYAGCAWRLAQGYMWYNFLPSLLMETINVLICFQVL 1584
            +LP  PTD E   Y+ T R  +  FG+FS L L + +WLF +      +F  +  L+  YLL+SY  V++ G+D     H  +L    +     PTVDI+LP   EPIEVL NT++Y+  L +   KL VYVLDDG     VK++A  YG+NYI R +   +KKAGNLR+AF +T GD   IFDADF PR DFLL T+P     P  AIVQTPQ+F     Q+WVE+GAG+ Q+LFYR+VQ NR RF A+ICVGS A YRR ALE +GGTA IGFS+DVHT F+  D GW VRYLPL +A G CPD  +AFF+Q  RW  GS  L T+  FWRS LT  QK+CY SG  YY + +LS+F N +P I+++  RP  V +YN  FAVPS+++  IA+R WS   YG     +  +Q  A+L A+ D++FG  + WVP+G     KN +Y     +     +  M  + AG  +++ +G  WY+ LP ++++  N+ +  + L
Sbjct:   15 ILPSGPTDFEKTLYLKTNRLGLYTFGVFSFLSLSVGMWLFVISFAAFYWFGAVVFLLQIYLLISY-TVSICGKDYDISKHHKILEEHPIDPLTCPTVDIYLPCCKEPIEVLENTYKYVKQLQYPAPKLKVYVLDDGASDE-VKTMAQSYGYNYIVREDRPRLKKAGNLRWAFARTEGDFFTIFDADFCPRPDFLLETLPIHLSKPNTAIVQTPQFFRTSTNQSWVEQGAGAVQELFYRVVQVNRNRFGASICVGSNAVYRRAALEEVGGTAEIGFSEDVHTGFYAVDRGWKVRYLPLCLACGICPDTPRAFFSQQMRWCMGSTTLLTNLDFWRSGLTPIQKICYLSGMMYYSAISLSIFMNPLPGILMLWCRPQYVRYYNLAFAVPSIVYSIIAIRCWSKARYGFNVQFVMVIQSYAYLTAIKDRVFGRALAWVPSGDTKAHKNHKYRNMRILAWGWMMTVMGAVIAGTTYQILKGLPWYDCLPLIVLDVFNLFLAHRFL 512          
BLAST of jgi.p|Trimin1|177419 vs. uniprot
Match: A0A067T2T6_GALM3 (Glyco_trans_2-like domain-containing protein n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T2T6_GALM3)

HSP 1 Score: 434 bits (1115), Expect = 1.920e-141
Identity = 236/512 (46.09%), Postives = 311/512 (60.74%), Query Frame = 1
Query:  103 VLPEPPTDVEMMSYIDTRRTFIIGFGMFSCLPLIIRLWLFTLVEPFFVPMALLVSS---YLLVSYFAVAVWGRDMRYEDHELVLTMQKDYK-----PTVDIFLPNAGEPIEVLNNTFRYIAGLDWEREKLNVYVLDDGPRPHSVKSLANQYGFNYIRRPNPGHMKKAGNLRYAFTQTHGDIIIIFDADFTPRHDFLLHTVPYFNQYPKAAIVQTPQYFTVKPEQTWVERGAGSTQQLFYRLVQQNRQRFDATICVGSAAAYRRVALEPLGGTANIGFSKDVHTSFFLSDSGWVVRYLPLPMAKGTCPDRKKAFFTQNYRWATGSLMLTTSSGFWRSNLTLQQKVCYASGGAYYISTALSLFANAVPSIVLVLTRPHLVIWYNTLFAVPSLLFPFIAMRMWSTQHYGLESIRIRWLQYSAHLMALYDQIFGEHMVWVPTG------AVGNSK---NRRYNTAMAMLLHVTVAQMVMLYAGCAWRLAQGYMWYNFLPSLLMETINVLICFQVLY 1587
            VLP PPTD E   Y  TRR  +  FG FS L + + +W F     ++  + + V+    YLL SY  V   GRD   E H  ++  +  Y      P+VDI+LP   EP+EVL NT++Y+A LD+   K  V+VLDDG    +VK LA  YGFNYI R N  H+KKAGNLRYAF +T GD  +IFDADF PRHDFL   +PY    PK AI+Q+PQ+F   PEQTWVE+GA STQ+ FYR+VQ NR RF A ICVGS A YRR AL  +GGTA IG S+DVHT F+    GW ++Y+PL +A G  PD   A F+Q  RW +GS  L T+  FW+SNL+L QK+CY SG  +Y S  + +F N +P  +LV   PHLV+WYN  FAVPS+++  I  R+WS Q Y      +  +Q  A+ MA+ D+IF    +WVP+G        G  K   N +Y     +    T      +YAG A+R+ QGY WY+FLP +L++ +N+  C + ++
Sbjct:  213 VLPSPPTDDEKYLYAQTRRIPLYAFGTFSFLSVSVGMWFFVKATKYYWWLGIFVAFIQIYLLCSYL-VGYCGRDFNSEQHRQIVA-EHSYTSDTGFPSVDIYLPCCKEPLEVLENTYKYVAKLDYPNFK--VWVLDDGGLD-TVKRLAGAYGFNYITRDNKPHLKKAGNLRYAFPRTTGDFFVIFDADFCPRHDFLSEMLPYTKWNPKIAIIQSPQFFHPCPEQTWVEQGASSTQEFFYRIVQVNRDRFGAAICVGSNALYRREALVEVGGTAEIGHSEDVHTGFYAVTRGWTLKYIPLALACGISPDTPPACFSQQMRWCSGSSTLLTNPDFWKSNLSLIQKLCYMSGMLFYTSAGMMIFVNHLPGPLLVWLSPHLVLWYNCFFAVPSVIYCTIIFRLWSRQKYNFNVNFVYTIQQYAYFMAIKDRIFNTTALWVPSGDNNAHVGAGQKKKAPNNKYRNMRILCAVWTWGTSGAMYAGVAYRIVQGYHWYHFLPIVLLDLLNIYTCHKFIF 719          
BLAST of jgi.p|Trimin1|177419 vs. uniprot
Match: A0A6A6ASI7_9PLEO (Glycosyltransferase family 2 protein n=1 Tax=Dothidotthia symphoricarpi CBS 119687 TaxID=1392245 RepID=A0A6A6ASI7_9PLEO)

HSP 1 Score: 428 bits (1101), Expect = 2.440e-141
Identity = 235/531 (44.26%), Postives = 324/531 (61.02%), Query Frame = 1
Query:   37 DSAESVEEGLRLIAHEN--------VSDETVLPEPPTDVEMMSYIDTRRTFIIGFGMFSCLPLIIRLWLFTL-VEPF--FVPMALLVSSYLLVSYFAVAVWGRDMRYEDHELVLT---MQKDYKPTVDIFLPNAGEPIEVLNNTFRYIAGLDWEREKLNVYVLDDGPRPHSVKSLANQYGFNYIRRPNPGHMKKAGNLRYAFTQTHGDIIIIFDADFTPRHDFLLHTVPYFNQYPKAAIVQTPQYFTVKPEQTWVERGAGSTQQLFYRLVQQNRQRFDATICVGSAAAYRRVALEPLGGTANIGFSKDVHTSFFLSDSGWVVRYLPLPMAKGTCPDRKKAFFTQNYRWATGSLMLTTSSGFWRSNLTLQQKVCYASGGAYYISTALSLFANAVPSIVLVLTRPHLVIWYNTLFAVPSLLFPFIAMRMWSTQHYGLESIRIRWLQYSAHLMALYDQIFGEHMVWVPTGAVGNSKNRRYNTAMAMLLHVTVAQMVMLYAGCAWRLAQGYMWYNFLPSLLMETINVLICFQVLY 1587
            D  E V+  L L A E         V  E ++P  P++ E + Y+ T R  +  FG+ S L L   +WLF +   PF  F  M +L+ +YL VSY  V++ G+D  Y+ H  +L    + +   PTVDI+LP   EPIEVL NT++Y+  L +   K+ V+VLDDG     V++LA  +G+ YI R +   +KKAGNLR+AF +T GD   I+DADF PR DFLL  VP    +PK AIVQTPQ+F VK EQTWVE+GAG  Q+LFYR++Q NR R+ A+ICVGS A YRR AL  +GGTA IGFS+DVHT F     GW VRY+PL +A G CPD  +AFF+Q  RW  GS  L T+  FWRS LT  QK+CY SG  YY + +LS+F N +P ++++  RP  V +YN  FAVPSL++  IA+R W+   YG     I ++Q  A++ A+ D++FG  + WVP+G     KN +Y     +    TV+    L +G  ++  QG+ WY+  P+LL+   N+ +  + L+
Sbjct:   36 DRDEQVKRSLFLRAREQLVATYAPQVPPELIMPSGPSNEEKLLYLKTNRLGLYSFGVLSFLSLSAGMWLFVVSAVPFYWFGAMVVLLQAYLFVSY-GVSLVGKDFDYKKHLEILKEHPINEVTAPTVDIYLPCCKEPIEVLANTYKYVKALKYPPGKMKVFVLDDGASAE-VEALATSFGYEYICREDRPRLKKAGNLRWAFARTTGDYFAIYDADFCPREDFLLELVPQHLAHPKTAIVQTPQFFRVKEEQTWVEQGAGGVQELFYRVIQVNRNRWGASICVGSNALYRREALVEVGGTAEIGFSEDVHTGFDALTRGWEVRYVPLCLACGICPDTPRAFFSQQMRWCMGSTTLLTNPRFWRSKLTFMQKLCYLSGMMYYSAISLSIFLNPLPGLLMIWVRPDYVRYYNLAFAVPSLIYSIIAIRFWAKARYGFNVQFIMYIQSYAYMTAIKDRLFGRALAWVPSGDTKAHKNNKYRNMRLLAWVWTVSSCGALISGVTYQCLQGFKWYDAFPTLLLMAFNLFLAHRFLF 564          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177419 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZHD0_9STRA0.000e+0100.00Nucleotide-diphospho-sugar transferase n=1 Tax=Tri... [more]
A0A836CEU8_9STRA1.520e-27468.31Nucleotide-diphospho-sugar transferase n=2 Tax=Tri... [more]
A0A835Z2T0_9STRA1.950e-27067.74Nucleotide-diphospho-sugar transferase n=2 Tax=Tri... [more]
A0A835ZE48_9STRA5.280e-26867.55Nucleotide-diphospho-sugar transferase n=1 Tax=Tri... [more]
A0A835Z5C3_9STRA5.360e-21856.50Nucleotide-diphospho-sugar transferase n=1 Tax=Tri... [more]
A0A836CCW4_9STRA1.970e-18252.88Nucleotide-diphospho-sugar transferase n=1 Tax=Tri... [more]
A0A6A6VRX0_9PEZI2.100e-14446.40Nucleotide-diphospho-sugar transferase n=1 Tax=Pse... [more]
M3A7Q6_PSEFD4.230e-14345.80Glycosyltransferase family 2 protein (Fragment) n=... [more]
A0A067T2T6_GALM31.920e-14146.09Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A6A6ASI7_9PLEO2.440e-14144.26Glycosyltransferase family 2 protein n=1 Tax=Dothi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_151contigContig_151:39722..41314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177419|e_gw1.151.66.1
DescriptionBelongs to the glycosyl hydrolase 12 (cellulase H) family
COG categoryI
Max annot lvl4751|Fungi
EggNOG OGsCOG1215@1|root,2S2M7@2759|Eukaryota,39Z7M@33154|Opisthokonta,3NX1F@4751|Fungi,3QSQI@4890|Ascomycota
Evalue4.66e-141
Seed ortholog337075.U4LUN8
Hectar predicted targeting categoryother localisation
TranscriptId177741
TrackFilteredModels1
ProteinId177419
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177419gene_15140Tribonema minus UTEX_B_3156 geneContig_151 39722..41314 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15140_1exon_15140_1Tribonema minus UTEX_B_3156 exonContig_151 39722..41314 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15140CDS_15140Tribonema minus UTEX_B_3156 CDSContig_151 39722..41314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177419Trimin1|177419|e_gw1.151.66.1Tribonema minus UTEX_B_3156 polypeptideContig_151 39722..41314 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15140 ID=mRNA_15140|Name=jgi.p|Trimin1|177419|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1593bp|location=Sequence derived from alignment at Contig_151:39722..41314+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTCAGGATTCAGTCGTGGAAGCATCTGGTGGATTCAGCCGAGTC
GGTGGAGGAAGGCCTGCGGCTAATTGCACATGAAAACGTGTCAGATGAGA
CTGTGCTGCCTGAGCCGCCGACTGATGTCGAGATGATGAGCTACATAGAC
ACGAGAAGAACGTTCATTATCGGCTTTGGCATGTTTTCTTGTCTACCACT
CATCATCAGACTTTGGCTCTTTACCCTGGTTGAACCGTTTTTTGTACCTA
TGGCACTGCTAGTGTCAAGCTATCTGCTTGTGTCCTACTTTGCAGTAGCC
GTTTGGGGTAGAGACATGCGGTACGAGGATCATGAGCTGGTACTGACGAT
GCAGAAAGATTACAAGCCGACCGTTGACATATTTCTCCCAAATGCCGGAG
AGCCCATCGAGGTACTCAACAACACATTTCGGTACATTGCAGGACTCGAT
TGGGAGCGCGAAAAGCTGAATGTGTATGTACTTGATGATGGGCCGCGACC
ACATTCTGTAAAATCGCTGGCAAATCAGTACGGTTTCAACTACATCAGAA
GACCCAATCCGGGGCATATGAAGAAGGCCGGTAACCTAAGATATGCTTTC
ACACAGACACACGGAGATATCATCATCATTTTTGATGCAGATTTCACACC
CAGACACGATTTCCTGTTGCACACAGTACCATACTTCAACCAGTACCCTA
AAGCTGCCATCGTACAGACACCGCAGTACTTCACCGTCAAACCAGAGCAA
ACCTGGGTGGAAAGGGGAGCCGGAAGCACACAGCAACTGTTTTATCGGCT
GGTTCAGCAGAACCGTCAGCGTTTTGACGCAACAATTTGTGTTGGAAGTG
CGGCTGCCTACAGGCGCGTTGCACTAGAGCCATTGGGAGGAACGGCCAAT
ATTGGTTTCAGCAAAGATGTGCACACATCATTTTTCCTCAGTGACTCTGG
ATGGGTGGTCAGGTACTTGCCGCTGCCGATGGCGAAAGGTACGTGTCCAG
ATCGAAAGAAGGCGTTCTTTACGCAGAATTATCGTTGGGCGACGGGCAGC
CTCATGTTGACAACATCCAGTGGATTTTGGAGATCAAACCTAACACTACA
ACAAAAGGTTTGTTATGCCAGCGGAGGGGCGTATTACATCAGCACCGCAC
TGTCGCTATTTGCAAACGCAGTTCCGTCGATCGTGCTGGTGCTCACACGT
CCACACTTGGTTATCTGGTACAACACTTTGTTTGCAGTACCGTCATTGCT
CTTCCCGTTCATCGCAATGCGGATGTGGTCAACACAACACTACGGGCTCG
AGAGTATCAGGATCCGTTGGTTACAGTACAGCGCGCACTTGATGGCGCTT
TATGACCAGATATTTGGTGAACACATGGTCTGGGTGCCGACTGGAGCAGT
CGGAAACAGCAAAAACAGGCGATACAATACGGCAATGGCGATGCTGCTGC
ATGTCACAGTGGCACAAATGGTCATGTTATATGCTGGATGCGCATGGCGC
CTTGCACAGGGATACATGTGGTACAATTTCCTGCCTTCACTGCTGATGGA
AACGATTAACGTGTTGATTTGCTTTCAAGTGCTTTATAAATAG
back to top

protein sequence of jgi.p|Trimin1|177419

>Trimin1|177419|e_gw1.151.66.1 ID=Trimin1|177419|e_gw1.151.66.1|Name=jgi.p|Trimin1|177419|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=531bp
MKLRIQSWKHLVDSAESVEEGLRLIAHENVSDETVLPEPPTDVEMMSYID
TRRTFIIGFGMFSCLPLIIRLWLFTLVEPFFVPMALLVSSYLLVSYFAVA
VWGRDMRYEDHELVLTMQKDYKPTVDIFLPNAGEPIEVLNNTFRYIAGLD
WEREKLNVYVLDDGPRPHSVKSLANQYGFNYIRRPNPGHMKKAGNLRYAF
TQTHGDIIIIFDADFTPRHDFLLHTVPYFNQYPKAAIVQTPQYFTVKPEQ
TWVERGAGSTQQLFYRLVQQNRQRFDATICVGSAAAYRRVALEPLGGTAN
IGFSKDVHTSFFLSDSGWVVRYLPLPMAKGTCPDRKKAFFTQNYRWATGS
LMLTTSSGFWRSNLTLQQKVCYASGGAYYISTALSLFANAVPSIVLVLTR
PHLVIWYNTLFAVPSLLFPFIAMRMWSTQHYGLESIRIRWLQYSAHLMAL
YDQIFGEHMVWVPTGAVGNSKNRRYNTAMAMLLHVTVAQMVMLYAGCAWR
LAQGYMWYNFLPSLLMETINVLICFQVLYK*
back to top

mRNA from alignment at Contig_151:39722..41314+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15140 ID=mRNA_15140|Name=jgi.p|Trimin1|177419|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1593bp|location=Sequence derived from alignment at Contig_151:39722..41314+ (Tribonema minus UTEX_B_3156 )
ATGAAGCTCAGGATTCAGTCGTGGAAGCATCTGGTGGATTCAGCCGAGTC GGTGGAGGAAGGCCTGCGGCTAATTGCACATGAAAACGTGTCAGATGAGA CTGTGCTGCCTGAGCCGCCGACTGATGTCGAGATGATGAGCTACATAGAC ACGAGAAGAACGTTCATTATCGGCTTTGGCATGTTTTCTTGTCTACCACT CATCATCAGACTTTGGCTCTTTACCCTGGTTGAACCGTTTTTTGTACCTA TGGCACTGCTAGTGTCAAGCTATCTGCTTGTGTCCTACTTTGCAGTAGCC GTTTGGGGTAGAGACATGCGGTACGAGGATCATGAGCTGGTACTGACGAT GCAGAAAGATTACAAGCCGACCGTTGACATATTTCTCCCAAATGCCGGAG AGCCCATCGAGGTACTCAACAACACATTTCGGTACATTGCAGGACTCGAT TGGGAGCGCGAAAAGCTGAATGTGTATGTACTTGATGATGGGCCGCGACC ACATTCTGTAAAATCGCTGGCAAATCAGTACGGTTTCAACTACATCAGAA GACCCAATCCGGGGCATATGAAGAAGGCCGGTAACCTAAGATATGCTTTC ACACAGACACACGGAGATATCATCATCATTTTTGATGCAGATTTCACACC CAGACACGATTTCCTGTTGCACACAGTACCATACTTCAACCAGTACCCTA AAGCTGCCATCGTACAGACACCGCAGTACTTCACCGTCAAACCAGAGCAA ACCTGGGTGGAAAGGGGAGCCGGAAGCACACAGCAACTGTTTTATCGGCT GGTTCAGCAGAACCGTCAGCGTTTTGACGCAACAATTTGTGTTGGAAGTG CGGCTGCCTACAGGCGCGTTGCACTAGAGCCATTGGGAGGAACGGCCAAT ATTGGTTTCAGCAAAGATGTGCACACATCATTTTTCCTCAGTGACTCTGG ATGGGTGGTCAGGTACTTGCCGCTGCCGATGGCGAAAGGTACGTGTCCAG ATCGAAAGAAGGCGTTCTTTACGCAGAATTATCGTTGGGCGACGGGCAGC CTCATGTTGACAACATCCAGTGGATTTTGGAGATCAAACCTAACACTACA ACAAAAGGTTTGTTATGCCAGCGGAGGGGCGTATTACATCAGCACCGCAC TGTCGCTATTTGCAAACGCAGTTCCGTCGATCGTGCTGGTGCTCACACGT CCACACTTGGTTATCTGGTACAACACTTTGTTTGCAGTACCGTCATTGCT CTTCCCGTTCATCGCAATGCGGATGTGGTCAACACAACACTACGGGCTCG AGAGTATCAGGATCCGTTGGTTACAGTACAGCGCGCACTTGATGGCGCTT TATGACCAGATATTTGGTGAACACATGGTCTGGGTGCCGACTGGAGCAGT CGGAAACAGCAAAAACAGGCGATACAATACGGCAATGGCGATGCTGCTGC ATGTCACAGTGGCACAAATGGTCATGTTATATGCTGGATGCGCATGGCGC CTTGCACAGGGATACATGTGGTACAATTTCCTGCCTTCACTGCTGATGGA AACGATTAACGTGTTGATTTGCTTTCAAGTGCTTTATAAATAG
back to top

Coding sequence (CDS) from alignment at Contig_151:39722..41314+

>mRNA_15140 ID=mRNA_15140|Name=jgi.p|Trimin1|177419|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1593bp|location=Sequence derived from alignment at Contig_151:39722..41314+ (Tribonema minus UTEX_B_3156 )
ATGAAGCTCAGGATTCAGTCGTGGAAGCATCTGGTGGATTCAGCCGAGTC
GGTGGAGGAAGGCCTGCGGCTAATTGCACATGAAAACGTGTCAGATGAGA
CTGTGCTGCCTGAGCCGCCGACTGATGTCGAGATGATGAGCTACATAGAC
ACGAGAAGAACGTTCATTATCGGCTTTGGCATGTTTTCTTGTCTACCACT
CATCATCAGACTTTGGCTCTTTACCCTGGTTGAACCGTTTTTTGTACCTA
TGGCACTGCTAGTGTCAAGCTATCTGCTTGTGTCCTACTTTGCAGTAGCC
GTTTGGGGTAGAGACATGCGGTACGAGGATCATGAGCTGGTACTGACGAT
GCAGAAAGATTACAAGCCGACCGTTGACATATTTCTCCCAAATGCCGGAG
AGCCCATCGAGGTACTCAACAACACATTTCGGTACATTGCAGGACTCGAT
TGGGAGCGCGAAAAGCTGAATGTGTATGTACTTGATGATGGGCCGCGACC
ACATTCTGTAAAATCGCTGGCAAATCAGTACGGTTTCAACTACATCAGAA
GACCCAATCCGGGGCATATGAAGAAGGCCGGTAACCTAAGATATGCTTTC
ACACAGACACACGGAGATATCATCATCATTTTTGATGCAGATTTCACACC
CAGACACGATTTCCTGTTGCACACAGTACCATACTTCAACCAGTACCCTA
AAGCTGCCATCGTACAGACACCGCAGTACTTCACCGTCAAACCAGAGCAA
ACCTGGGTGGAAAGGGGAGCCGGAAGCACACAGCAACTGTTTTATCGGCT
GGTTCAGCAGAACCGTCAGCGTTTTGACGCAACAATTTGTGTTGGAAGTG
CGGCTGCCTACAGGCGCGTTGCACTAGAGCCATTGGGAGGAACGGCCAAT
ATTGGTTTCAGCAAAGATGTGCACACATCATTTTTCCTCAGTGACTCTGG
ATGGGTGGTCAGGTACTTGCCGCTGCCGATGGCGAAAGGTACGTGTCCAG
ATCGAAAGAAGGCGTTCTTTACGCAGAATTATCGTTGGGCGACGGGCAGC
CTCATGTTGACAACATCCAGTGGATTTTGGAGATCAAACCTAACACTACA
ACAAAAGGTTTGTTATGCCAGCGGAGGGGCGTATTACATCAGCACCGCAC
TGTCGCTATTTGCAAACGCAGTTCCGTCGATCGTGCTGGTGCTCACACGT
CCACACTTGGTTATCTGGTACAACACTTTGTTTGCAGTACCGTCATTGCT
CTTCCCGTTCATCGCAATGCGGATGTGGTCAACACAACACTACGGGCTCG
AGAGTATCAGGATCCGTTGGTTACAGTACAGCGCGCACTTGATGGCGCTT
TATGACCAGATATTTGGTGAACACATGGTCTGGGTGCCGACTGGAGCAGT
CGGAAACAGCAAAAACAGGCGATACAATACGGCAATGGCGATGCTGCTGC
ATGTCACAGTGGCACAAATGGTCATGTTATATGCTGGATGCGCATGGCGC
CTTGCACAGGGATACATGTGGTACAATTTCCTGCCTTCACTGCTGATGGA
AACGATTAACGTGTTGATTTGCTTTCAAGTGCTTTATAAATAG
back to top