Trimin1|353190|estExt_Genemark1.C_Ctg_1480028 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353190
Unique NameTrimin1|353190|estExt_Genemark1.C_Ctg_1480028
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length379
Homology
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A835Z7P9_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7P9_9STRA)

HSP 1 Score: 752 bits (1942), Expect = 1.990e-274
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0
Query:    1 MVALACVCAESAMVALWRARLLLLVPGTAQAVLSAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVTDPPPTPSLSRPSSLQGSSIRLVPSPVQPAHDTSRAAPPDAAARHDDSGGIAVEEGLRQGM 378
            MVALACVCAESAMVALWRARLLLLVPGTAQAVLSAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVTDPPPTPSLSRPSSLQGSSIRLVPSPVQPAHDTSRAAPPDAAARHDDSGGIAVEEGLRQGM
Sbjct:    1 MVALACVCAESAMVALWRARLLLLVPGTAQAVLSAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVTDPPPTPSLSRPSSLQGSSIRLVPSPVQPAHDTSRAAPPDAAARHDDSGGIAVEEGLRQGM 378          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A6H5L263_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L263_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 9.440e-54
Identity = 121/299 (40.47%), Postives = 166/299 (55.52%), Query Frame = 0
Query:   77 AVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRAT--GGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVT-----DPPPTPSLSRPSSLQGSSIRLVPSP-VQPAHDTSRAAPPDAAARHDDSGG 367
            A G+ D+P  ALISRS +     DP  CTF  KV NA  AG ++ +V+D  +E LF+M R++  G      +IP VL+S +SG  L AL    +D  GP V+VD +DP+  MF ++++TM  +V GFL +LL C S+ + T HR LRRY+++       RP+SL + L++PE  V  G  LE DSC +CLEAYR+GDK+  L C H  HA C+ PWL             +RQR+CP+CK  VT      PP + S S           ++ +P +QPAH        D   R DD  G
Sbjct:  149 AAGEEDLPSAALISRSEKD----DPSGCTFETKVLNAQGAGFSMVIVYDSREENLFKMGRSSSKGAKHPKVEIPLVLVSHASGLALKALIETASDTRGPEVYVDNTDPF-GMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTN--RPMSLPEVLQLPEVRVEEGSRLEGDSCPVCLEAYRIGDKLRSLPCQHAFHAGCITPWLT------------QRQRSCPMCKDPVTLTVGLAPPTSSSPSSXXXXXXXXAAVITAPAMQPAHA-------DGVERGDDGAG 421          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A836C717_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C717_9STRA)

HSP 1 Score: 160 bits (406), Expect = 2.130e-42
Identity = 131/379 (34.56%), Postives = 162/379 (42.74%), Query Frame = 0
Query:   21 LLLLVPGTAQAVLSAFDKQGAYT-------GMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPV----VALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSC----------------------------------AICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVTDPPPTPSLSRPSSLQGSSIRLVPSPVQPAHDTSRAA 354
            LL LV   A A L A+D+ G +T               GI GRLRVA PDIFGC PLD +       TDM         I   L  ++ KDP +C+FA KV                                                                V+VD +DPYE++F SLNMTM+ VV  FL +LL CASLFLC+S RLL R +A     R  RPLSLAQA R+PE  V  G  LEKD                                    +ICLE Y VG++++ L C HV+H  C+ PW++            ERQRTCPLCK +V  PPP   L  PSS   +S R+ P    P    +R+A
Sbjct:    8 LLCLVCHLATASLVAYDENGGFTVPPSTTSTTLTCCPQGITGRLRVAKPDIFGCAPLDLSAPGDEDYTDMESGLRPALPIVVLLSRSLPKDPAACSFATKV----------------------------------------------------------------VYVDNTDPYEQLFFSLNMTMVAVVTTFLLALLLCASLFLCSSERLLGRREAAL---RSTRPLSLAQAARLPEVVVAAGGDLEKDRSEKIMIALNGSAQRLKVCCGTVXXXXXXXXXXXXXSICLEDYTVGERLVRLTCAHVMHRACVLPWIS------------ERQRTCPLCKTEVVPPPP---LRTPSSA--ASQRIFPYTYVPPLQANRSA 302          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A0K9RHC9_SPIOL (RING-type domain-containing protein n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RHC9_SPIOL)

HSP 1 Score: 85.5 bits (210), Expect = 1.260e-14
Identity = 93/302 (30.79%), Postives = 127/302 (42.05%), Query Frame = 0
Query:   51 HGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLC---TSHRLLR---RYDAIGGHGRPPRPLSLAQAL---RMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVT----DPPP---TPSLS-RPSSLQGS 335
            HG+ G+L +A P I GC+ L   +++ VG    P+ ALI R          G C+F  K+  A  AG   A+++D  D        A  G     KIP+V +S ++G  +           GP V V     YE    S+      +   F++ L   A L  C     HR+ R   R      HG   R +    +L    + E++ T        +CAICLE YRVGDK+  L C H  H  C+  WL        T+ R      CP+CK D      +PP    TP LS  PSS   S
Sbjct:   35 HGMCGKLYIAEP-IDGCSQLRNRVEDVVGNCSSPI-ALIVR----------GGCSFEDKIRRAQNAGFEAAIIYDNEDVGSLV---AMAGNSAGIKIPAVFVSKATGNKIKTYGA------GPDVEVWILASYESSAWSI------MAISFISLLAMSAVLATCFFVRRHRIRRERPRARVREFHGMSSRLVKAMPSLVFTTVTEENCTAS------TCAICLEDYRVGDKIRILPCRHKFHTFCVDAWL--------TSWR----TFCPVCKRDARTSNGEPPASESTPLLSSNPSSAASS 291          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A4Z2DTX1_SCHJA (E3 ubiquitin-protein ligase RNF13 isoform 2 n=3 Tax=Schistosoma japonicum TaxID=6182 RepID=A0A4Z2DTX1_SCHJA)

HSP 1 Score: 84.3 bits (207), Expect = 3.650e-14
Identity = 79/291 (27.15%), Postives = 127/291 (43.64%), Query Frame = 0
Query:   34 SAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLF---LCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVTDPP 321
            S F+   A  G  I     + GR+  + P I GC      L +    + +P ++LI R          G+C+F++K   A R G   A++F+  D+  F M   T   ++   I +V++  S G +L  L   C     P  FV+    + +   S+ + +I ++   L S++A +  +   L   HR  RRY            L + +  ++PE     G   E ++C ICLE Y+ GDK+  L C H  H+ C+ PWL              R+  CP+CK  V + P
Sbjct:   34 SEFEDSEALFGNVITQGSLLLGRIHASQP-INGCVDR-IPLPKNASASTLPYISLIKR----------GNCSFSRKTIAAERGGYIAAIIFNDEDDSTFPMGHNTSEVIN---ISAVMVGLSDGELL--LKKYCV----PHYFVEILSAHRR---SIMLYLIPLITCLLLSIIALSVAYCIRLWDRHRRRRRYC-----------LPVKELHKIPETLFKEGSS-EFETCVICLEDYKDGDKLRLLPCRHAYHSKCVDPWLL------------RRRGCCPICKKKVHNRP 276          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A8B9ARK4_PHODC (receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X1 n=2 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B9ARK4_PHODC)

HSP 1 Score: 81.6 bits (200), Expect = 7.560e-14
Identity = 100/322 (31.06%), Postives = 129/322 (40.06%), Query Frame = 0
Query:   34 SAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLG--PRV-----FVDASDPYEKMFESLNMTMIGV-VCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGD-------VTDPPPTPSLSRPSSLQGSSIRLV 340
            S F + GA     ++ + G +G +  A P +  C PL+      V        ALI R          G C F +KV NA  AG   A+++D  D PL     A GG  D   IP+V +S +SG  L   A      L   PR      F+ A       F SL  T+IG+ VC           LF+   H    R  A   HG   R +    +L     S          +CAICLE Y+VG+K+  L C H  HA C+  WL        TA R      CP+CK D       +     TP LS  SS   SS R +
Sbjct:    9 SLFSRLGAP----VVRRSGESGVMYPAEP-LDACTPLN----NKVVNDSRSSFALIIR----------GGCHFDEKVRNAQNAGFKAAIMYDNEDHPLVF---AIGGSPDGITIPAVFVSKASGEALRKYAGLTDMELWILPRTKNLEWFIMAIS-----FISLLATVIGLAVC-----------LFVHRQHGRHERSRASEIHGMSSRLVEAMPSLIFISASED---NCTSQTCAICLEDYKVGEKLRRLPCHHKFHAVCVDSWL--------TAWR----SFCPMCKQDCNSSTIYIPASESTPLLSSISSFPSSSARSL 277          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A430Q2G7_SCHBO (E3 ubiquitin-protein ligase RNF13 n=3 Tax=Schistosoma TaxID=6181 RepID=A0A430Q2G7_SCHBO)

HSP 1 Score: 83.2 bits (204), Expect = 8.650e-14
Identity = 76/264 (28.79%), Postives = 118/264 (44.70%), Query Frame = 0
Query:   64 IFGCNPLDFTLDEAVGKTD-----MPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPL-SLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVTDPP 321
            I+   PL   +D+     D     +P ++LI R          G C+F  K   A R G    V+F+ VD+  F M   +   V    IP V++  S G++L  L   C     P  FV+    + +   S+ + +I ++   L S++A   L +    RLL RY     +  P + L  + + L + + S       E ++CAICLE Y+ GDK+  L CGH  H+ C+ PWL             +R+  CP+CK  V + P
Sbjct:   56 IYASKPLKGCVDQIPKPKDDHNSTLPYISLIKR----------GDCSFVDKALAAERGGYIATVIFNDVDDSTFPMGYNSSTNVS---IPVVMVGLSDGKLL--LDKYCV----PHYFVEILPAHRR---SIVLYLIPLITCLLISVVA---LSVAYGIRLLNRYRRRYRYCLPVKELRKIPETLFVKDSS-------EFETCAICLEDYKDGDKLRVLPCGHAYHSKCVDPWLL------------KRRGFCPICKKKVRNRP 275          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A6J0ML59_RAPSA (receptor homology region, transmembrane domain- and RING domain-containing protein 4-like n=2 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0ML59_RAPSA)

HSP 1 Score: 82.4 bits (202), Expect = 1.460e-13
Identity = 106/367 (28.88%), Postives = 148/367 (40.33%), Query Frame = 0
Query:   22 LLLVPGTAQAV---------LSAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLD-EAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALA--TACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEK--SVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVT----DPPPTPS----LSRPSSLQGSSIRLVPSPVQPAHDTSRAAPPDAAARHDDSG 366
            LLL+P  A A          LS  D +  +T M  + +    G L VA P +  C+ L  T+     G    P   LI R          G C+F +K+ NA +AG   A+V++  D   F +  A G P     I    +S S+G +L   A  T     L P     A       F SL + M  V+          A+ F    HR+ RR   + G G   R + +    RMP    +  C       SC IC+E YR+G+K+  L C H  HA C+  WL             +R+  CP+CK D      + PP+PS    L  PS    SS  L  SP   +  +S   PP ++     +G
Sbjct:   11 LLLIPHLASAKIMLIGKNTSLSFDDIEADFTPM--IKKSDQCGVLYVAEP-LDACSDLVNTVSIPEEGSITSPSYVLIIR----------GGCSFEEKIRNAQKAGYKAAIVYNNEDYGFFLISMA-GNP-SGVVIYGTFVSKSTGEILKGYAGRTDMELWLAPSFETSAWSIMAISFISL-LAMSAVL----------ATCFFVRRHRIRRRRVRLMGGGEFAR-MGIDSIRRMPTTVFNGVCEEASTSISCVICIEDYRIGEKLRILPCNHKFHAKCVDLWLG------------QRRSFCPVCKRDARTININMPPSPSERTPLLSPSVTPTSSFLLSSSPSTSSVQSSYDIPPSSSTMQLQTG 338          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A7C9AUE2_OPUST (RING-type domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AUE2_OPUST)

HSP 1 Score: 82.4 bits (202), Expect = 1.530e-13
Identity = 95/306 (31.05%), Postives = 130/306 (42.48%), Query Frame = 0
Query:   52 GIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDE-PLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLR-RYDAIGGHGRPPRPLSLAQALRMPEKSVTCGC--GLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAV---------SIAGIATAQRPERQRTCPLCKGDVTDPPPTPSLSRPSSLQGSSIRLV-PSP 343
            GI G+L +A P +  C+PL   +++          ALI R          G C F  KV  A +AG   A+V+D VD  PL  M  ++ G     KI +V +S +SG  L + A      LG  V++  S  YE    S+      +   F++ L   A L  C   R  R R +   G  R    +S      MP    T          +CAICLE YRVGDK+  L C H  HA C+  WL             A  +T + P  + T PL   + +    TP  S  SS+  S+I +  PSP
Sbjct:   54 GICGKLYIAEP-LDACSPLMNKIEQNNSGNCTSPFALIIR----------GVCGFEDKVRRAQKAGFETAIVYDNVDNSPLVAMAGSSAG----IKIHAVFVSKASGERLKSNAG-----LGAEVWIIPS--YENSAWSI------MAISFISLLAMSAVLATCFFVRRNRIRRERPQGRVREFHGMSSCLVKAMPSLIFTAVTDDNCTSSTCAICLEDYRVGDKLRILPCSHKFHAFCVDSWLTTWRTFCPVCKRDARTSTGEPPASEST-PLLSSNPSSAASTPFSSFRSSVHSSAIPIASPSP 330          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: D7LXA5_ARALL (Peptidase/ protein binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=D7LXA5_ARALL)

HSP 1 Score: 80.5 bits (197), Expect = 6.630e-13
Identity = 97/346 (28.03%), Postives = 150/346 (43.35%), Query Frame = 0
Query:   19 ARLLLLVPGTAQAVLSAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLC---TSHRLLRRYD-AIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVT----DPPP---TPSLSRPSSLQGSSIRLVPS----PVQPAHD 349
            A++LL+   T+   LS  D +  +T M      G  G L VA P +  C+ L  T++   G +  P   LI R          G C+F +K+ NA +AG   A+V+DY D   +    +  G      I    +S ++G VL    T  A      V++  S      FE+   +++ +   F++ L   A L  C     HR+ RR   A+ G+  P    ++ + +        C       SCAIC+E YR+GDK+  L C H  H  C+  WL             +R+  CP+CK D      D P    TP L+  +S+  +S  L+ S    P+Q +H+
Sbjct:   20 AKILLIGKNTS---LSFDDIEANFTPMIKRSDQG--GVLYVAEP-LDACSDLVNTVNVKNGSSVPPPYVLIIR----------GGCSFEEKIRNAQKAGYKAAIVYDYED---YGFLVSMAGNPSGVLIYGTFVSKATGEVL----TQYAGRTDFEVWLMPS------FETSAWSIMAI--SFISLLAMSAVLATCFFVRRHRVRRRRILALNGNDFPRMAKNMLKRMPTTIFKGVCDEASTSISCAICIEDYRIGDKLRILPCHHKFHVGCVDLWLG------------QRRSFCPVCKRDARSISIDMPASEHTPLLTPSNSMTPTSSFLLSSSSTTPLQSSHE 322          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7P9_9STRA1.990e-274100.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A6H5L263_9PHAE9.440e-5440.47RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A836C717_9STRA2.130e-4234.56RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A0K9RHC9_SPIOL1.260e-1430.79RING-type domain-containing protein n=2 Tax=Spinac... [more]
A0A4Z2DTX1_SCHJA3.650e-1427.15E3 ubiquitin-protein ligase RNF13 isoform 2 n=3 Ta... [more]
A0A8B9ARK4_PHODC7.560e-1431.06receptor homology region, transmembrane domain- an... [more]
A0A430Q2G7_SCHBO8.650e-1428.79E3 ubiquitin-protein ligase RNF13 n=3 Tax=Schistos... [more]
A0A6J0ML59_RAPSA1.460e-1328.88receptor homology region, transmembrane domain- an... [more]
A0A7C9AUE2_OPUST1.530e-1331.05RING-type domain-containing protein n=1 Tax=Opunti... [more]
D7LXA5_ARALL6.630e-1328.03Peptidase/ protein binding protein n=1 Tax=Arabido... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 260..313
e-value: 2.3E-7
score: 40.5
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 258..314
e-value: 1.2E-10
score: 41.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 260..314
score: 12.1057
NoneNo IPR availableGENE3D3.50.30.30coord: 28..171
e-value: 1.1E-16
score: 63.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 310..378
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 355..369
NoneNo IPR availablePANTHERPTHR45931SI:CH211-59O9.10coord: 143..318
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 254..323
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 254..324
e-value: 3.3E-17
score: 63.4
IPR003137PA domainPFAMPF02225PAcoord: 65..158
e-value: 8.5E-6
score: 25.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_148contigContig_148:204019..211029 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353190mRNA_14546Tribonema minus UTEX_B_3156 mRNAContig_148 203583..211029 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353190|estExt_Genemark1.C_Ctg_1480028 ID=Trimin1|353190|estExt_Genemark1.C_Ctg_1480028|Name=jgi.p|Trimin1|353190|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=379bp
MVALACVCAESAMVALWRARLLLLVPGTAQAVLSAFDKQGAYTGMCILLQ
HGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKD
PGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSV
LISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCG
FLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVT
CGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIAT
AQRPERQRTCPLCKGDVTDPPPTPSLSRPSSLQGSSIRLVPSPVQPAHDT
SRAAPPDAAARHDDSGGIAVEEGLRQGM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR003137PA_domain