mRNA_16837 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136066
Unique NamemRNA_16837
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|136066 vs. uniprot
Match: A0A836CJV7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJV7_9STRA)

HSP 1 Score: 400 bits (1028), Expect = 9.910e-142
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1 
Query:    1 GDGHVWWNGPQKLLPWGNLPTRLWFKLRERAEAALPGPVYIALGPDNQHYVRYADGTVDHYSFHGELMRELHERGRGGYVQSLAFAPGGGYFVLYSDGTYAAQGLPPGLQAELWSQSAARVEHINIGAHGEWFVRYADGRWRCGDHTGCQSLAHTIGHLQDRLYGIRRVTFGADCSWVVEF 543
            GDGHVWWNGPQKLLPWGNLPTRLWFKLRERAEAALPGPVYIALGPDNQHYVRYADGTVDHYSFHGELMRELHERGRGGYVQSLAFAPGGGYFVLYSDGTYAAQGLPPGLQAELWSQSAARVEHINIGAHGEWFVRYADGRWRCGDHTGCQSLAHTIGHLQDRLYGIRRVTFGADCSWVVEF
Sbjct:    1 GDGHVWWNGPQKLLPWGNLPTRLWFKLRERAEAALPGPVYIALGPDNQHYVRYADGTVDHYSFHGELMRELHERGRGGYVQSLAFAPGGGYFVLYSDGTYAAQGLPPGLQAELWSQSAARVEHINIGAHGEWFVRYADGRWRCGDHTGCQSLAHTIGHLQDRLYGIRRVTFGADCSWVVEF 181
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BLAST of jgi.p|Trimin1|136066 vs. uniprot
Match: A0A835YVD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVD4_9STRA)

HSP 1 Score: 167 bits (422), Expect = 7.170e-46
Identity = 83/180 (46.11%), Postives = 107/180 (59.44%), Query Frame = 1 
Query:    4 DGHVWWNGPQKLLPWGNLPTRLWFKLRERA-EAALPGPVYIALGPDNQHYVRYADGTVDHYSFHGELMRELHERGRGGYVQSLAFAPGGGYFVLYSDGTYAAQGLPPGLQAELWSQSAARVEHINIGAHGEWFVRYADGRWRCGDHTGCQSLAHTIGHLQDRLYGIRRVTFGADCSWVVE 540
            DG  WW G   +   G++P  LW +L+++  +  LP P YIALGPD Q Y+R+ADG+  HY+ +G+L+RELH  GR   V+SLAFAPGGGY                         +AA VEH++IGAHG WFVRY+DGRW  GDH     L +T G  +D  + +R V FGAD SWV E
Sbjct:  196 DGRAWWTGVSPVNFAGDVPRSLWCQLQQQQRDTTLPRPAYIALGPDEQFYIRFADGSA-HYNAYGDLLRELHASGRAADVRSLAFAPGGGY------------------------SAAAAVEHVSIGAHGVWFVRYSDGRWAIGDHAASPGLPYTAGLWRDNGWQVRSVAFGADRSWVAE 350
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BLAST of jgi.p|Trimin1|136066 vs. uniprot
Match: A0A0D2NSH0_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2NSH0_9CHLO)

HSP 1 Score: 92.4 bits (228), Expect = 8.670e-21
Identity = 49/131 (37.40%), Postives = 73/131 (55.73%), Query Frame = 1 
Query:  157 YADGTVDHYSFHGELMRELHERGRGGYVQSLAFAPGGGYFVLYSDGTYAAQGLPPGLQAELWSQ--SAARVEHINIGAHGEWFVRYADGRWRCGDHTGCQSLAHTIGHLQDRLYGIRRVTFGADCSWVVEF 543
            +ADG+      HG +   L  R  G  V+ LAFAPGGGY++++ DG  +  GL  GL  +L  +  S ARVE + +G  GEWFVR+ DG W+ G     +  +  +  L  + + I++V  G D SWV+ +
Sbjct:    7 FADGSSQWRDSHGHVTEALKSR-EGTAVELLAFAPGGGYYIMWEDGASSWLGLLRGLDNQLIGRQKSRARVEFLAVGPEGEWFVRFLDGGWKAGGLA--ERCSEVLNDLHTKGWSIQKVLIGHDESWVIVY 134
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BLAST of jgi.p|Trimin1|136066 vs. uniprot
Match: A0A0D2MXJ1_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MXJ1_9CHLO)

HSP 1 Score: 69.7 bits (169), Expect = 6.660e-11
Identity = 50/169 (29.59%), Postives = 78/169 (46.15%), Query Frame = 1 
Query:   46 WGNLPTRLWFKLRERAEAALPGPVYIALGPDNQHYVRYADGTVDHYSFHGELMRELHERGRGGYVQSLAFAPGGGYFVLYSDGTYAAQGLPPGLQAELWSQSAARV--EHINIGAHGEWFVRYADGRWR-CGDHTGCQSLAHTIGHLQDRLYGIRRVTFGADCSWVVEF 543
            W ++P  L  K+  R ++  P   Y+ LG  + ++V++ADG+   +S    L +EL  R     V+ LAFAPGGGY++++ DG     GLP GL  +L  +  +R                      WR C   T C  +   +G   +    I +V FG D SW + +
Sbjct:  146 WDDVPIELHNKVNGRQKSRPPVD-YVVLGEGDYYFVQFADGSSQ-WSASEALSKELQSRSDCD-VELLAFAPGGGYYIMWEDGESCWLGLPRGLHNQLIGRQKSRAGXXXXXXXXXXXXXXXXXXXXWRACNLPTRCSDVLDELG---EEGRSILKVLFGHDGSWAIVY 308
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BLAST of jgi.p|Trimin1|136066 vs. uniprot
Match: A0A1E7ESD2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ESD2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.000e-9
Identity = 44/182 (24.18%), Postives = 77/182 (42.31%), Query Frame = 1 
Query:    4 DGHVWWNGPQKLLPWGNLPTRLWFKLRERAEAALPGPVYIALGPDNQHYVRYADGTVDHYSFHGELMRELHERGRGGYVQSLAFAPGGGYFVLYSDGTYAAQGLPPGLQAEL--WSQSAARVEHINIGAHGEWFVRYADGRWRCGDHTGCQSLAHTIGHLQDRLYGIRRVTFGADCSWVVEF 543
            DG  +W G        NLP      LR      LP   ++A GP + ++ +++ G  +H++   +   +       G V  +AFAP GGY++L+ D +     +P  L  +   W +S   V+H+                WRC   +   S   TI  + ++   I  + FG D +W++ +
Sbjct:    4 DGEPFWEG--------NLPKEFMNNLRG-CPRHLPRVDFVAFGPGDAYFEQFSKGK-NHWNSTSDDFDDAMNNHSDGVVHFVAFAPDGGYYILFEDRSSEYFNVPQALYCKHNGWQKSLPCVDHVRD--------------WRCNGQSS--SYDDTINKIHEQGDNIECIVFGHDSTWLISY 159
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136066 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CJV7_9STRA9.910e-142100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YVD4_9STRA7.170e-4646.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0D2NSH0_9CHLO8.670e-2137.40Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A0D2MXJ1_9CHLO6.660e-1129.59Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A1E7ESD2_9STRA7.000e-924.18Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_147contigContig_147:338733..339275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136066|gw1.147.4.1
Max annot lvl2836|Bacillariophyta
EggNOG OGs2E9SV@1|root,2SG3M@2759|Eukaryota,2XEZT@2836|Bacillariophyta
Evalue1.03e-12
Seed ortholog159749.K0SVC5
Hectar predicted targeting categoryother localisation
TranscriptId136388
TrackFilteredModels1
ProteinId136066
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136066gene_16837Tribonema minus UTEX_B_3156 geneContig_147 338733..339275 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16837_1exon_16837_1Tribonema minus UTEX_B_3156 exonContig_147 338733..339275 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16837CDS_16837Tribonema minus UTEX_B_3156 CDSContig_147 338733..339275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136066Trimin1|136066|gw1.147.4.1Tribonema minus UTEX_B_3156 polypeptideContig_147 338733..339275 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16837 ID=mRNA_16837|Name=jgi.p|Trimin1|136066|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=543bp|location=Sequence derived from alignment at Contig_147:338733..339275+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGGACGGCCATGTGTGGTGGAACGGCCCTCAGAAACTGCTTCCCTGGGG
CAACCTGCCGACAAGGCTGTGGTTCAAGCTGCGCGAGCGCGCCGAGGCGG
CACTGCCAGGCCCAGTCTACATCGCCCTCGGCCCCGATAATCAGCACTAC
GTGCGCTACGCCGATGGCACCGTGGACCACTACAGTTTCCATGGCGAGCT
CATGCGCGAGCTGCACGAGCGCGGCAGGGGCGGCTATGTGCAGTCGCTGG
CGTTTGCGCCCGGTGGCGGCTACTTCGTGCTGTACAGCGATGGCACCTAC
GCCGCACAGGGGCTGCCGCCGGGGCTGCAAGCCGAACTGTGGTCGCAGTC
GGCGGCGCGCGTGGAGCACATCAACATCGGTGCGCACGGCGAGTGGTTTG
TGCGCTACGCGGATGGCCGCTGGCGCTGCGGCGACCATACAGGGTGCCAG
AGCCTGGCCCACACCATCGGCCACTTGCAGGACCGCCTGTACGGCATCCG
GCGCGTGACATTTGGCGCGGACTGCTCGTGGGTGGTTGAGTTC
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protein sequence of jgi.p|Trimin1|136066

>Trimin1|136066|gw1.147.4.1 ID=Trimin1|136066|gw1.147.4.1|Name=jgi.p|Trimin1|136066|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=181bp
GDGHVWWNGPQKLLPWGNLPTRLWFKLRERAEAALPGPVYIALGPDNQHY
VRYADGTVDHYSFHGELMRELHERGRGGYVQSLAFAPGGGYFVLYSDGTY
AAQGLPPGLQAELWSQSAARVEHINIGAHGEWFVRYADGRWRCGDHTGCQ
SLAHTIGHLQDRLYGIRRVTFGADCSWVVEF
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mRNA from alignment at Contig_147:338733..339275+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16837 ID=mRNA_16837|Name=jgi.p|Trimin1|136066|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=543bp|location=Sequence derived from alignment at Contig_147:338733..339275+ (Tribonema minus UTEX_B_3156 )
GGGGACGGCCATGTGTGGTGGAACGGCCCTCAGAAACTGCTTCCCTGGGG
CAACCTGCCGACAAGGCTGTGGTTCAAGCTGCGCGAGCGCGCCGAGGCGG
CACTGCCAGGCCCAGTCTACATCGCCCTCGGCCCCGATAATCAGCACTAC
GTGCGCTACGCCGATGGCACCGTGGACCACTACAGTTTCCATGGCGAGCT
CATGCGCGAGCTGCACGAGCGCGGCAGGGGCGGCTATGTGCAGTCGCTGG
CGTTTGCGCCCGGTGGCGGCTACTTCGTGCTGTACAGCGATGGCACCTAC
GCCGCACAGGGGCTGCCGCCGGGGCTGCAAGCCGAACTGTGGTCGCAGTC
GGCGGCGCGCGTGGAGCACATCAACATCGGTGCGCACGGCGAGTGGTTTG
TGCGCTACGCGGATGGCCGCTGGCGCTGCGGCGACCATACAGGGTGCCAG
AGCCTGGCCCACACCATCGGCCACTTGCAGGACCGCCTGTACGGCATCCG
GCGCGTGACATTTGGCGCGGACTGCTCGTGGGTGGTTGAGTTC
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Coding sequence (CDS) from alignment at Contig_147:338733..339275+

>mRNA_16837 ID=mRNA_16837|Name=jgi.p|Trimin1|136066|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=543bp|location=Sequence derived from alignment at Contig_147:338733..339275+ (Tribonema minus UTEX_B_3156 )
GGGGACGGCCATGTGTGGTGGAACGGCCCTCAGAAACTGCTTCCCTGGGG
CAACCTGCCGACAAGGCTGTGGTTCAAGCTGCGCGAGCGCGCCGAGGCGG
CACTGCCAGGCCCAGTCTACATCGCCCTCGGCCCCGATAATCAGCACTAC
GTGCGCTACGCCGATGGCACCGTGGACCACTACAGTTTCCATGGCGAGCT
CATGCGCGAGCTGCACGAGCGCGGCAGGGGCGGCTATGTGCAGTCGCTGG
CGTTTGCGCCCGGTGGCGGCTACTTCGTGCTGTACAGCGATGGCACCTAC
GCCGCACAGGGGCTGCCGCCGGGGCTGCAAGCCGAACTGTGGTCGCAGTC
GGCGGCGCGCGTGGAGCACATCAACATCGGTGCGCACGGCGAGTGGTTTG
TGCGCTACGCGGATGGCCGCTGGCGCTGCGGCGACCATACAGGGTGCCAG
AGCCTGGCCCACACCATCGGCCACTTGCAGGACCGCCTGTACGGCATCCG
GCGCGTGACATTTGGCGCGGACTGCTCGTGGGTGGTTGAGTTC
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