Trimin1|353126|estExt_Genemark1.C_Ctg_1450026 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353126
Unique NameTrimin1|353126|estExt_Genemark1.C_Ctg_1450026
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length961
Homology
BLAST of jgi.p|Trimin1|353126 vs. uniprot
Match: A0A836CL24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL24_9STRA)

HSP 1 Score: 1666 bits (4314), Expect = 0.000e+0
Identity = 960/960 (100.00%), Postives = 960/960 (100.00%), Query Frame = 0
Query:    1 MVAPPGCTTGLPAFDLRAANPDHEVKEDLQGVRNAMENWVSSSMAPEGHSKRHLVHMISEGTTLPAVLADFWHAVGSCVDKQRLAPEDRSFRRLHILTAPFCEPLRSYKTMAILDRLLERAAAEGGCQHFMPATDHDGVTVYHNHPRFRNTPPPTVKAYAVRHSPYPSFSLAAHYKAGGGAQARWPLPPAGQEPPLDSMMQQPLRRLAPRPMQPDRSATAGSNSAXXXXXXXXGTPQRSKPEGRRGKKQAPRPDKEWAPRVRVALESAYAKAAVSASDDKVEPRGAAPATSVAVLQATMEWVARVLQEAEDVKETSGYEGTSVSRQLRGAHAHQSALRPDDDACSPPPAHPVRSLARCLQNRGLVSSTVVRRMRSVAAYSVTRSATAEDLFADVWDAVVELTQRAAEAGCAVPQEHEATLDDAGRPPCYSAVVVAPEFDAYCSEGFRRFGEILRSTLDYLPMEDNITIEVFHPEFVTGHDKERDRSAMRRSPWPAIHICFEGARVPDVQESAQRHFTLEVVDELSKIPSAARSCLDSVAAVASPTRLAGDRDAFLHITYQSTDTFYKDEGGRQAHIQEILTTVPVLSQHLETDNNGEVTVRFRIEEVSKNHRSQRFVVMITADTARMRDLPQIEPIKTAPIMVLSKRKDRKRRAEQAGLTWAPTPQAPPAAAAMTAAMQAQQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARRGSLGAAGFALLPQAHLLPNAAAAAXXXXXXXXXLMSAAPALALKREASAQHPEGPYTAADLGPLGARAYQMLSDAEQWHMVGVGVNPETGTPDANNPIVKCHVCEAVCIGLVHMHREGCRLRRLLDDCMSVLEAAVPEGGNTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVQQALPVPTLPGSHPAWMNDARGGSXXXXXXXXXXXXXXXXXXXRQHGEFSPASGIHAILHAAAD 960
            MVAPPGCTTGLPAFDLRAANPDHEVKEDLQGVRNAMENWVSSSMAPEGHSKRHLVHMISEGTTLPAVLADFWHAVGSCVDKQRLAPEDRSFRRLHILTAPFCEPLRSYKTMAILDRLLERAAAEGGCQHFMPATDHDGVTVYHNHPRFRNTPPPTVKAYAVRHSPYPSFSLAAHYKAGGGAQARWPLPPAGQEPPLDSMMQQPLRRLAPRPMQPDRSATAGSNSAXXXXXXXXGTPQRSKPEGRRGKKQAPRPDKEWAPRVRVALESAYAKAAVSASDDKVEPRGAAPATSVAVLQATMEWVARVLQEAEDVKETSGYEGTSVSRQLRGAHAHQSALRPDDDACSPPPAHPVRSLARCLQNRGLVSSTVVRRMRSVAAYSVTRSATAEDLFADVWDAVVELTQRAAEAGCAVPQEHEATLDDAGRPPCYSAVVVAPEFDAYCSEGFRRFGEILRSTLDYLPMEDNITIEVFHPEFVTGHDKERDRSAMRRSPWPAIHICFEGARVPDVQESAQRHFTLEVVDELSKIPSAARSCLDSVAAVASPTRLAGDRDAFLHITYQSTDTFYKDEGGRQAHIQEILTTVPVLSQHLETDNNGEVTVRFRIEEVSKNHRSQRFVVMITADTARMRDLPQIEPIKTAPIMVLSKRKDRKRRAEQAGLTWAPTPQAPPAAAAMTAAMQAQQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARRGSLGAAGFALLPQAHLLPNAAAAAXXXXXXXXXLMSAAPALALKREASAQHPEGPYTAADLGPLGARAYQMLSDAEQWHMVGVGVNPETGTPDANNPIVKCHVCEAVCIGLVHMHREGCRLRRLLDDCMSVLEAAVPEGGNTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVQQALPVPTLPGSHPAWMNDARGGSXXXXXXXXXXXXXXXXXXXRQHGEFSPASGIHAILHAAAD
Sbjct:    1 MVAPPGCTTGLPAFDLRAANPDHEVKEDLQGVRNAMENWVSSSMAPEGHSKRHLVHMISEGTTLPAVLADFWHAVGSCVDKQRLAPEDRSFRRLHILTAPFCEPLRSYKTMAILDRLLERAAAEGGCQHFMPATDHDGVTVYHNHPRFRNTPPPTVKAYAVRHSPYPSFSLAAHYKAGGGAQARWPLPPAGQEPPLDSMMQQPLRRLAPRPMQPDRSATAGSNSAXXXXXXXXGTPQRSKPEGRRGKKQAPRPDKEWAPRVRVALESAYAKAAVSASDDKVEPRGAAPATSVAVLQATMEWVARVLQEAEDVKETSGYEGTSVSRQLRGAHAHQSALRPDDDACSPPPAHPVRSLARCLQNRGLVSSTVVRRMRSVAAYSVTRSATAEDLFADVWDAVVELTQRAAEAGCAVPQEHEATLDDAGRPPCYSAVVVAPEFDAYCSEGFRRFGEILRSTLDYLPMEDNITIEVFHPEFVTGHDKERDRSAMRRSPWPAIHICFEGARVPDVQESAQRHFTLEVVDELSKIPSAARSCLDSVAAVASPTRLAGDRDAFLHITYQSTDTFYKDEGGRQAHIQEILTTVPVLSQHLETDNNGEVTVRFRIEEVSKNHRSQRFVVMITADTARMRDLPQIEPIKTAPIMVLSKRKDRKRRAEQAGLTWAPTPQAPPAAAAMTAAMQAQQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARRGSLGAAGFALLPQAHLLPNAAAAAXXXXXXXXXLMSAAPALALKREASAQHPEGPYTAADLGPLGARAYQMLSDAEQWHMVGVGVNPETGTPDANNPIVKCHVCEAVCIGLVHMHREGCRLRRLLDDCMSVLEAAVPEGGNTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVQQALPVPTLPGSHPAWMNDARGGSXXXXXXXXXXXXXXXXXXXRQHGEFSPASGIHAILHAAAD 960          
BLAST of jgi.p|Trimin1|353126 vs. uniprot
Match: D7FTV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV7_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 5.790e-29
Identity = 102/313 (32.59%), Postives = 149/313 (47.60%), Query Frame = 0
Query:   16 LRAANPDHEVKEDLQGVRNAMENWVSSSMAPEGHSKRHLVHMISEGTTLPAVLADFWHAVGSCVDKQRLAPEDRSFRRLHILTAPFCEPLRSYKTMAILDRLLERAAAEGGCQHFMPATDHDGVTVYHNHPRFRNTPPPTVKAYAVRHSPYPSFSLAAHYKAGGGAQARWPLPPAGQEPPLDSMMQQPLRRLAP-RPMQPDRSATAG----SNSAXXXXXXXXGTPQ-RSKPEGRRGKKQAPRPDKEWAPRVRVALESAYAKAAVSASDDKVEPRGAA-------------PATSVAVLQATMEWVARVLQEA 309
            L ++ PD    +D   + + M  W    +  + HS R+  +++SEGT+LP V  DFW AV   +D+ R  PE+RSFR++ +  APFCE LR Y+TM    +LL+++A +GGCQ F     H      H HP +R+ P P     A RHSP+P+FS+   Y+ GG                        L+ LA  R    +  A  G    S  A         +P+ R K E  R  +Q     +EWA + R +LE AY  AA    ++     G++             P +SV +LQAT EW+  VL++A
Sbjct:   46 LASSKPD---VKDTTSIISEMNEWTKV-VTFDTHSSRNTKYIVSEGTSLPEVFFDFWKAVSGAIDQHRATPENRSFRKVLMFVAPFCEELRDYETMEHAHQLLQQSACDGGCQDFGTYITHS-----HYHPNYRHRPKPKQSRMASRHSPHPAFSIDVVYRKGG------------------------LKSLASIRDSSEEAEARQGTRVKSTPARTAPLRADPSPEDRKKSEIARKIRQ-----EEWAAKTRSSLEHAYGMAASYGREEAEHGVGSSMWAHQHVLAGRGVPESSVEILQATQEWLTEVLKDA 320          
BLAST of jgi.p|Trimin1|353126 vs. uniprot
Match: A0A6H5KUH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH9_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 3.780e-28
Identity = 65/164 (39.63%), Postives = 97/164 (59.15%), Query Frame = 0
Query:   16 LRAANPDHEVKEDLQGVRNAMENWVSSSMAPEGHSKRHLVHMISEGTTLPAVLADFWHAVGSCVDKQRLAPEDRSFRRLHILTAPFCEPLRSYKTMAILDRLLERAAAEGGCQHFMPATDHDGVTVYHNHPRFRNTPPPTVKAYAVRHSPYPSFSLAAHYKAGG 179
            L ++ PD    +D   + + M+ W    +  + +S R+  +++SEGT+LP VL DFW AV   +D+ R  PE+RSFR++ +  APFCE LR Y+TM    +LL+++A +GGCQ F     H      H HP +R+ P P     A RHSP+P+FS+   Y+ GG
Sbjct:   46 LASSKPD---VKDTTNIISEMKEWTKV-VTFDTYSSRNTKYIVSEGTSLPEVLFDFWKAVSGAIDQHRATPENRSFRKVLMFVAPFCEELRDYETMEHTHQLLQQSACDGGCQDFGTYITHS-----HFHPNYRHRPKPKQSRMASRHSPHPAFSIDVVYRKGG 200          
BLAST of jgi.p|Trimin1|353126 vs. uniprot
Match: A0A6H5KW26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW26_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 6.180e-22
Identity = 60/144 (41.67%), Postives = 86/144 (59.72%), Query Frame = 0
Query:  364 LVSSTVVRRMRSVAAYSVTRSATAEDLFADVWDAVVELTQRAAEAGCAVPQEHEATLDDAGRPPCYSAVVVAPEFDAYCSEGFRRFG---EILRSTLDYLPMEDNITIEVFHPEFVTGHDKERDRSAMRRSPWPAIHICFEGAR 504
            L    +V+RM++++ Y VTRS TAE+ ++D W+ V+E+  RAA  GC VP E + T   A   PCY A++V P+   Y S+ F RF    E L   L +LPME +I++E FHPE V+       R    RSP+P +H+C+ G R
Sbjct:  163 LPGKELVKRMKNISQYIVTRSKTAEEAYSDTWEVVMEMADRAASRGCDVPTE-DYTSSSA---PCYGALLVTPDIATYSSDTFLRFQAKVETLNRGLKHLPMEHDISVEAFHPEAVSDASPLDHR--FTRSPYPTLHVCYHGLR 300          
BLAST of jgi.p|Trimin1|353126 vs. uniprot
Match: A0A836CPW2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPW2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.230e-10
Identity = 44/98 (44.90%), Postives = 51/98 (52.04%), Query Frame = 0
Query:  548 AGDRDAFLHITYQSTDTFYKDEGGRQAHIQ---------------------------------EILTTVPVLSQHLETDNNGEVTVRFRIEEVSKNHR 612
            A +   +L +  QSTDTFYKDEGGRQAHIQ                                 EIL T+  ++QHLETDN G   +RFRIEEVSKNHR
Sbjct:  542 AAEEVLYLQVVDQSTDTFYKDEGGRQAHIQVDVKITNPKGLDLSRIPLVLQLHYENGYAVQNQEILATI--MAQHLETDNRGGAVIRFRIEEVSKNHR 637          
BLAST of jgi.p|Trimin1|353126 vs. uniprot
Match: D8LJ34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ34_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 3.750e-7
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0
Query:  569 EGGRQAHIQEILTTVPVLSQHLETDNNGEVTVRFRIEEVSKNHRSQRFVVMITADTARMRDLPQIEPIKTAPIMVLSKRKDRKRRAEQ 656
            E G + H QEIL         L T+ +G   ++F+I EVS+ H+SQRF V I  D     +   + P+ T P+MVLSKRK+R+ +AE+
Sbjct:  213 EAGTEVHSQEILQVQS--DTQLVTNEHGRANLKFKITEVSQRHQSQRFCVKICPDVRLAPEFSNVAPVVTVPVMVLSKRKNRRLKAEK 298          
BLAST of jgi.p|Trimin1|353126 vs. uniprot
Match: A0A7S2Y042_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y042_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.240e-5
Identity = 40/164 (24.39%), Postives = 83/164 (50.61%), Query Frame = 0
Query:  369 VVRRMRSVAAYSVTRSATAEDLFADVWDAVVELTQRAAEAGC------------AVPQEH---EATLDDAGR-PPCYSAVVVAPEFDAYCSEGFRRFGEILRSTLDYLPMEDNITIEVFHPEFVTGHDKERDRSAM-RRSPWPAIHICFEGARV-PDVQESAQR 514
            ++  + +++ + V+ +  AE + ++ W AV +L + A    C            +V   H   E  ++D+    PC S +   P F+ + +  F++F   L++ ++ +P E+++ IE+FHPE    H   + R  + RR+P+P +H+   G +  P + E++ R
Sbjct:  205 LLTNLDTISQFIVSSAEGAESVLSEFWQAVDDLNKNAISQSCPPERNLPNQVISSVIASHDLDEDVVEDSHLYRPCVSTLFSTPYFNNFNAVAFQKFARCLKTAVNNIPCEEDVHIEIFHPE----HVARKGRIIVNRRAPYPTLHLYHNGLKTAPTLHETSTR 364          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353126 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A836CL24_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FTV7_ECTSI5.790e-2932.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUH9_9PHAE3.780e-2839.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW26_9PHAE6.180e-2241.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CPW2_9STRA7.230e-1044.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LJ34_ECTSI3.750e-740.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2Y042_9STRA1.240e-524.39Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009858Protein of unknown function DUF1415PFAMPF07209DUF1415coord: 419..499
e-value: 5.8E-6
score: 26.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 183..259
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 880..960
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 240..259
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 216..230
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 929..945
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 316..349

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_145contigContig_145:174802..185663 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353126mRNA_15208Tribonema minus UTEX_B_3156 mRNAContig_145 174802..186443 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353126|estExt_Genemark1.C_Ctg_1450026 ID=Trimin1|353126|estExt_Genemark1.C_Ctg_1450026|Name=jgi.p|Trimin1|353126|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=961bp
MVAPPGCTTGLPAFDLRAANPDHEVKEDLQGVRNAMENWVSSSMAPEGHS
KRHLVHMISEGTTLPAVLADFWHAVGSCVDKQRLAPEDRSFRRLHILTAP
FCEPLRSYKTMAILDRLLERAAAEGGCQHFMPATDHDGVTVYHNHPRFRN
TPPPTVKAYAVRHSPYPSFSLAAHYKAGGGAQARWPLPPAGQEPPLDSMM
QQPLRRLAPRPMQPDRSATAGSNSAGGGGGGSGGTPQRSKPEGRRGKKQA
PRPDKEWAPRVRVALESAYAKAAVSASDDKVEPRGAAPATSVAVLQATME
WVARVLQEAEDVKETSGYEGTSVSRQLRGAHAHQSALRPDDDACSPPPAH
PVRSLARCLQNRGLVSSTVVRRMRSVAAYSVTRSATAEDLFADVWDAVVE
LTQRAAEAGCAVPQEHEATLDDAGRPPCYSAVVVAPEFDAYCSEGFRRFG
EILRSTLDYLPMEDNITIEVFHPEFVTGHDKERDRSAMRRSPWPAIHICF
EGARVPDVQESAQRHFTLEVVDELSKIPSAARSCLDSVAAVASPTRLAGD
RDAFLHITYQSTDTFYKDEGGRQAHIQEILTTVPVLSQHLETDNNGEVTV
RFRIEEVSKNHRSQRFVVMITADTARMRDLPQIEPIKTAPIMVLSKRKDR
KRRAEQAGLTWAPTPQAPPAAAAMTAAMQAQQRQAPPVAAAMTAAMQAQQ
AAGDSGGALDVAALAARRGSLGAAGFALLPQAHLLPNAAAAAAAPAAPPA
ALMSAAPALALKREASAQHPEGPYTAADLGPLGARAYQMLSDAEQWHMVG
VGVNPETGTPDANNPIVKCHVCEAVCIGLVHMHREGCRLRRLLDDCMSVL
EAAVPEGGNTGAAVAAAAAAAAAAGAGGGPQSAERRGGSSGGAGVVQQAL
PVPTLPGSHPAWMNDARGGSGGGGSAAAAAAAQQQQQQQRQHGEFSPASG
IHAILHAAAD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009858DUF1415