mRNA_14316 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155913
Unique NamemRNA_14316
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|155913 vs. uniprot
Match: A0A835ZI83_9STRA (GTP cyclohydrolase 1 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI83_9STRA)

HSP 1 Score: 160 bits (404), Expect = 8.900e-50
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:    1 STCEHHLLPFHGHAHVAYLPSQQSQVIGLSKLPRVVHMFAQRLQVQERITSQVAQFIMQAVNARGVAVLLEATHLCMSMRG 243
            STCEHHLLPFHGHAHVAYLPSQQSQVIGLSKLPRVVHMFAQRLQVQERITSQVAQFIMQAVNARGVAVLLEATHLCMSMRG
Sbjct:    1 STCEHHLLPFHGHAHVAYLPSQQSQVIGLSKLPRVVHMFAQRLQVQERITSQVAQFIMQAVNARGVAVLLEATHLCMSMRG 81
[Close]
BLAST of jgi.p|Trimin1|155913 vs. uniprot
Match: K2BYZ0_9BACT (GTP cyclohydrolase 1 n=2 Tax=Bacteria TaxID=2 RepID=K2BYZ0_9BACT)

HSP 1 Score: 112 bits (280), Expect = 1.400e-29
Identity = 53/81 (65.43%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:    1 STCEHHLLPFHGHAHVAYLPSQQSQVIGLSKLPRVVHMFAQRLQVQERITSQVAQFIMQAVNARGVAVLLEATHLCMSMRG 243
            STCEHHLLPFHG AH+ Y+P  ++++IGLSKLPRVV +FA+RLQ QER+TSQ+  F+ QA+ A+G+ V+LEATHLCM  RG
Sbjct:   73 STCEHHLLPFHGKAHIGYIP--KAKIIGLSKLPRVVEVFARRLQNQERLTSQITDFLEQALQAKGIGVVLEATHLCMQARG 151
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BLAST of jgi.p|Trimin1|155913 vs. uniprot
Match: A0A7C3JGG6_9CHLR (GTP cyclohydrolase 1 n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C3JGG6_9CHLR)

HSP 1 Score: 112 bits (280), Expect = 2.870e-29
Identity = 54/81 (66.67%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:    1 STCEHHLLPFHGHAHVAYLPSQQSQVIGLSKLPRVVHMFAQRLQVQERITSQVAQFIMQAVNARGVAVLLEATHLCMSMRG 243
            S CEHH+LPF G A+VAYLP+++  VIGLSK+PR+V MFA+RLQVQER+T+++AQF+ QAVNARGVAV++E +H+C  MRG
Sbjct:   97 SLCEHHMLPFFGKAYVAYLPNEK--VIGLSKIPRIVEMFARRLQVQERMTNEIAQFLQQAVNARGVAVMVEGSHMCGMMRG 175
[Close]
BLAST of jgi.p|Trimin1|155913 vs. uniprot
Match: A0A542SP74_9MICO (GTP cyclohydrolase 1 n=1 Tax=Rarobacter incanus TaxID=153494 RepID=A0A542SP74_9MICO)

HSP 1 Score: 110 bits (275), Expect = 8.630e-29
Identity = 52/81 (64.20%), Postives = 69/81 (85.19%), Query Frame = 1 
Query:    1 STCEHHLLPFHGHAHVAYLPSQQSQVIGLSKLPRVVHMFAQRLQVQERITSQVAQFIMQAVNARGVAVLLEATHLCMSMRG 243
            STCEHHL+PFHG AHVAY+PS+Q  V GLSKL R+V ++A+R QVQER+T+Q+A+ +++ ++ RGVAV+LE  HLCMSMRG
Sbjct:   75 STCEHHLVPFHGVAHVAYIPSEQGSVTGLSKLARLVDVYAKRPQVQERLTTQIAEALVEYLHPRGVAVVLECEHLCMSMRG 155
[Close]
BLAST of jgi.p|Trimin1|155913 vs. uniprot
Match: A0A1G1KBH4_9BACT (GTP cyclohydrolase 1 n=1 Tax=Omnitrophica bacterium RIFCSPLOWO2_01_FULL_50_24 TaxID=1801829 RepID=A0A1G1KBH4_9BACT)

HSP 1 Score: 110 bits (275), Expect = 9.330e-29
Identity = 53/81 (65.43%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:    1 STCEHHLLPFHGHAHVAYLPSQQSQVIGLSKLPRVVHMFAQRLQVQERITSQVAQFIMQAVNARGVAVLLEATHLCMSMRG 243
            S CEHHLLPF+G AHVAYLP  Q ++IGLSK+PRVV +F++RLQVQER+T+Q+AQ +MQ +  +GVAV++EA H+CM+MRG
Sbjct:   78 SLCEHHLLPFYGRAHVAYLP--QGKIIGLSKIPRVVDVFSRRLQVQERLTNQIAQCLMQHLKPKGVAVVMEAFHMCMAMRG 156
[Close]
BLAST of jgi.p|Trimin1|155913 vs. uniprot
Match: A0A2H0LLM4_9BACT (GTP cyclohydrolase 1 n=1 Tax=Candidatus Omnitrophica bacterium CG11_big_fil_rev_8_21_14_0_20_45_26 TaxID=1974748 RepID=A0A2H0LLM4_9BACT)

HSP 1 Score: 110 bits (274), Expect = 1.160e-28
Identity = 53/81 (65.43%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:    1 STCEHHLLPFHGHAHVAYLPSQQSQVIGLSKLPRVVHMFAQRLQVQERITSQVAQFIMQAVNARGVAVLLEATHLCMSMRG 243
            S CEHHLLPF+G AHVAYLP  Q +++GLSK+PR+V +FA+RLQVQER+T Q+A  +MQA+   GVAV++EA HLCM+MRG
Sbjct:   74 SLCEHHLLPFYGKAHVAYLP--QGRIVGLSKIPRIVDVFARRLQVQERLTQQIADCLMQALQPSGVAVVIEAYHLCMAMRG 152
[Close]
BLAST of jgi.p|Trimin1|155913 vs. uniprot
Match: A0A1F8RIV3_9CHLR (GTP cyclohydrolase 1 n=1 Tax=Chloroflexi bacterium RBG_16_63_12 TaxID=1797657 RepID=A0A1F8RIV3_9CHLR)

HSP 1 Score: 110 bits (274), Expect = 1.320e-28
Identity = 52/81 (64.20%), Postives = 69/81 (85.19%), Query Frame = 1 
Query:    1 STCEHHLLPFHGHAHVAYLPSQQSQVIGLSKLPRVVHMFAQRLQVQERITSQVAQFIMQAVNARGVAVLLEATHLCMSMRG 243
            S CEHHLLPF GHAH+AY+P  +++++GLSK+PRVV MFA+RLQVQER+T Q+A F+M+ +N +GVAV+LEA HLC  +RG
Sbjct:   74 SLCEHHLLPFLGHAHIAYIP--RARILGLSKIPRVVDMFARRLQVQERMTRQIADFLMEVLNPQGVAVVLEAIHLCSMIRG 152
[Close]
BLAST of jgi.p|Trimin1|155913 vs. uniprot
Match: UPI001B836166 (GTP cyclohydrolase I FolE n=1 Tax=Phycicoccus sp. BSK3Z-2 TaxID=2828860 RepID=UPI001B836166)

HSP 1 Score: 109 bits (273), Expect = 2.730e-28
Identity = 53/81 (65.43%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:    1 STCEHHLLPFHGHAHVAYLPSQQSQVIGLSKLPRVVHMFAQRLQVQERITSQVAQFIMQAVNARGVAVLLEATHLCMSMRG 243
            STCEHHLLPFHG AH+ Y+P+Q  +V GLSKL R+V +FA+R QVQERIT+QVA  +++ ++A+GV V+LEA HLCMSMRG
Sbjct:   91 STCEHHLLPFHGVAHIGYIPAQDGRVTGLSKLARLVDVFAKRPQVQERITTQVADALVEHLDAQGVIVVLEAEHLCMSMRG 171
[Close]
BLAST of jgi.p|Trimin1|155913 vs. uniprot
Match: A0A1D8BQW0_9PSEU (GTP cyclohydrolase 1 n=1 Tax=Actinoalloteichus hymeniacidonis TaxID=340345 RepID=A0A1D8BQW0_9PSEU)

HSP 1 Score: 109 bits (273), Expect = 2.940e-28
Identity = 53/81 (65.43%), Postives = 67/81 (82.72%), Query Frame = 1 
Query:    1 STCEHHLLPFHGHAHVAYLPSQQSQVIGLSKLPRVVHMFAQRLQVQERITSQVAQFIMQAVNARGVAVLLEATHLCMSMRG 243
            S CEHHLLPFHG AHV Y+P+QQ +V GLSKL RVV ++A+R QVQER+TSQVA  +++ ++ RGV V++EA HLCMSMRG
Sbjct:   95 SYCEHHLLPFHGSAHVGYIPNQQGRVTGLSKLARVVDLYARRPQVQERLTSQVADALVRKLDPRGVIVVIEAEHLCMSMRG 175
[Close]
BLAST of jgi.p|Trimin1|155913 vs. uniprot
Match: A0A545W2T4_9HYPO (GTP cyclohydrolase 1 n=1 Tax=Cordyceps javanica TaxID=43265 RepID=A0A545W2T4_9HYPO)

HSP 1 Score: 108 bits (271), Expect = 3.560e-28
Identity = 53/81 (65.43%), Postives = 67/81 (82.72%), Query Frame = 1 
Query:    1 STCEHHLLPFHGHAHVAYLPSQQSQVIGLSKLPRVVHMFAQRLQVQERITSQVAQFIMQAVNARGVAVLLEATHLCMSMRG 243
            S CEHHLLPF G  HVAY+P +   ++GLSK+PRVV  FAQRLQ+QER+T+QVA+ I +A+  RGVAV++EATHLCM+MRG
Sbjct:   78 SLCEHHLLPFFGRVHVAYIPEES--IVGLSKIPRVVKAFAQRLQIQERLTTQVARCIDEALRPRGVAVVIEATHLCMAMRG 156
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155913 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZI83_9STRA8.900e-50100.00GTP cyclohydrolase 1 (Fragment) n=1 Tax=Tribonema ... [more]
K2BYZ0_9BACT1.400e-2965.43GTP cyclohydrolase 1 n=2 Tax=Bacteria TaxID=2 RepI... [more]
A0A7C3JGG6_9CHLR2.870e-2966.67GTP cyclohydrolase 1 n=1 Tax=Chloroflexi bacterium... [more]
A0A542SP74_9MICO8.630e-2964.20GTP cyclohydrolase 1 n=1 Tax=Rarobacter incanus Ta... [more]
A0A1G1KBH4_9BACT9.330e-2965.43GTP cyclohydrolase 1 n=1 Tax=Omnitrophica bacteriu... [more]
A0A2H0LLM4_9BACT1.160e-2865.43GTP cyclohydrolase 1 n=1 Tax=Candidatus Omnitrophi... [more]
A0A1F8RIV3_9CHLR1.320e-2864.20GTP cyclohydrolase 1 n=1 Tax=Chloroflexi bacterium... [more]
UPI001B8361662.730e-2865.43GTP cyclohydrolase I FolE n=1 Tax=Phycicoccus sp. ... [more]
A0A1D8BQW0_9PSEU2.940e-2865.43GTP cyclohydrolase 1 n=1 Tax=Actinoalloteichus hym... [more]
A0A545W2T4_9HYPO3.560e-2865.43GTP cyclohydrolase 1 n=1 Tax=Cordyceps javanica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_143contigContig_143:107924..108968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155913|gw1.143.112.1
BiGG ReactioniNJ661.Rv3609c
BRITEko00000,ko00001,ko00002,ko01000
KEGG rclassRC00263,RC00294,RC00323,RC00945,RC01188
KEGG ReactionR00428,R04639,R05046,R05048
KEGG ModuleM00126,M00841,M00842,M00843
KEGG Pathwayko00790,ko01100,map00790,map01100
KEGG koko:K01495
EC3.5.4.16
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0040007,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617
Preferred namefolE
DescriptionGTP cyclohydrolase I
COG categoryH
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG0302@1|root,COG0302@2|Bacteria,2GP2P@201174|Actinobacteria,4DXVF@85010|Pseudonocardiales
Evalue3.17e-29
Seed ortholog1120934.KB894418_gene1942
Hectar predicted targeting categoryother localisation
TranscriptId156235
TrackFilteredModels1
ProteinId155913
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155913gene_14316Tribonema minus UTEX_B_3156 geneContig_143 107924..108968 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155913Trimin1|155913|gw1.143.112.1Tribonema minus UTEX_B_3156 polypeptideContig_143 107924..108968 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14316_3exon_14316_3Tribonema minus UTEX_B_3156 exonContig_143 107924..107948 -
exon_14316_2exon_14316_2Tribonema minus UTEX_B_3156 exonContig_143 108279..108364 -
exon_14316_1exon_14316_1Tribonema minus UTEX_B_3156 exonContig_143 108837..108968 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14316CDS_14316Tribonema minus UTEX_B_3156 CDSContig_143 108837..108968 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14316 ID=mRNA_14316|Name=jgi.p|Trimin1|155913|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=243bp|location=Sequence derived from alignment at Contig_143:107924..108968- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGCACCTGCGAGCACCATCTGCTGCCCTTCCACGGGCACGCGCACGTGGC
CTACCTGCCCTCGCAGCAATCGCAAGTCATTGGGCTCAGCAAGCTGCCGC
GCGTAGTCCACATGTTCGCGCAGAGGCTACAGGTGCAAGAGCGCATCACC
AGCCAGGTGGCACAGTTCATCATGCAGGCCGTGAATGCACGTGGAGTGGC
TGTCCTCCTGGAGGCAACGCACCTGTGCATGTCTATGCGCGGC
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protein sequence of jgi.p|Trimin1|155913

>Trimin1|155913|gw1.143.112.1 ID=Trimin1|155913|gw1.143.112.1|Name=jgi.p|Trimin1|155913|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=81bp
STCEHHLLPFHGHAHVAYLPSQQSQVIGLSKLPRVVHMFAQRLQVQERIT
SQVAQFIMQAVNARGVAVLLEATHLCMSMRG
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mRNA from alignment at Contig_143:107924..108968-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14316 ID=mRNA_14316|Name=jgi.p|Trimin1|155913|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1045bp|location=Sequence derived from alignment at Contig_143:107924..108968- (Tribonema minus UTEX_B_3156 )
AGCACCTGCGAGCACCATCTGCTGCCCTTCCACGGGCACGCGCACGTGGC
CTACCTGCCCTCGCAGCAATCGCAAGTCATTGGGCTCAGCAAGCTGCCGC
GCGTAGTCCACATGTTCGCGCAGAGGCTACAGGTTGGGCGACCTGTACAA
ACTTTGAAGTCGATGTCACTGCGGCACACAAACCCTGAACCTTCGAGTCG
AGGCTGAGTGTTTGTTCATAGGGCTACTGTGGTGTACTCACTGGCAGTTC
CATCCTTTCCTGGCATACATGTGCTTGTGGCTTTGGTGGCTTGGTTTTCT
GGCCCTGGCATGAACACACATGCCGCTGCAGCAGCGCCTCACAGTCTGCA
TGCGTGGTAGCTATGATGCAGCGCCTGCAATCACAAGTACCTCTTCGTCT
AGTAGGATTTGAATTACTGTGCTAGTTGGCAACTTGAAGGTGCCAGGTGC
AGCAGCACTTAGTCTGGCAAGCACAATGCATGATGCTGCGAGCTAGGCGA
ACAAGGCAATTCCATCCTGTAATGCTTCACGCACACTGCACGCTCACGCG
CGCACTTGGCTTTAACGTTGTGCCCACCGTAAAATTCTTTGGCACTCGCT
GCAGGTGCAAGAGCGCATCACCAGCCAGGTGGCACAGTTCATCATGCAGG
CCGTGAATGCACGTGGAGTGGCTGTCCTCCTGGAGGCAACGTGAGTGCCC
GCAGTACTATGGTCAAATACAGGGCAATGGCTCATTGACAAGTGGGCATG
ATGGCTCTGCATGCACCACGCTTGCTAATTGATAGACCACTTTCGTGAAG
GAGCCACATGCATACCACTTGGTTTTTTTAAAGCCTGAAGCTCCTTGAGG
AATGCACATGTGTCGAAAGCACACCATGACCGCAATATGCGCTAGCATGA
AGCTTGAAAAGACTGCTGTTGCGCAGGTGCAACCGTGAAAGCTCAACATT
TTGCATTTTCTGCTTGTCTTGTTCGTGTCTGGCGCCATCTCATGACGGTT
GCTCGCTGCCATGCCTGCAGGCACCTGTGCATGTCTATGCGCGGC
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Coding sequence (CDS) from alignment at Contig_143:107924..108968-

>mRNA_14316 ID=mRNA_14316|Name=jgi.p|Trimin1|155913|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=243bp|location=Sequence derived from alignment at Contig_143:107924..108968- (Tribonema minus UTEX_B_3156 )
AGCACCTGCGAGCACCATCTGCTGCCCTTCCACGGGCACGCGCACGTGGC
CTACCTGCCCTCGCAGCAATCGCAAGTCATTGGGCTCAGCAAGCTGCCGC
GCGTAGTCCACATGTTCGCGCAGAGGCTACAGGTGCAAGAGCGCATCACC
AGCCAGGTGGCACAGTTCATCATGCAGGCCGTGAATGCACGTGGAGTGGC
TGTCCTCCTGGAGGCAACGCACCTGTGCATGTCTATGCGCGGC
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