Trimin1|353026|estExt_Genemark1.C_Ctg_1410024 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353026
Unique NameTrimin1|353026|estExt_Genemark1.C_Ctg_1410024
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length403
Homology
BLAST of jgi.p|Trimin1|353026 vs. uniprot
Match: A0A836CN71_9STRA (Grap2 and cyclin-D-interacting-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN71_9STRA)

HSP 1 Score: 728 bits (1878), Expect = 7.320e-264
Identity = 402/402 (100.00%), Postives = 402/402 (100.00%), Query Frame = 0
Query:    1 MSALAEGSTQQQLQWLAAKADAQLQATAAIKPHVPPQWQLMSWATPSDSLKVALSVMLTAANSISGSSTRFTLLFKTAPPPEITAGMVNEMGSLSDHLASSLAVALAPEQGVSPSLAVAIIGAVRAVQVALLELVKSVAAGPSTEPEWNHLTGALWEACKGVAEVPTTNKLAVRMQLMCVSMSIKDTIDEFKAALEAAEAADGGLSGEVSALSISGSADNQSHEPGKTADSARDEAVDSFDDLVDYMDGEGADEDAMSPAEAEAAAAVVELLRTSRACIKTANDAMAAATGSGAARGVMAWAGPLCEEVQSLAEQVGDVGMALYPPMEGAAVVAAADGFGARVTACLDKVDAAQERDAAAVEHLRGVLTERLDAKPTRATRLSPANRCRKAAAATADGGSCG 402
            MSALAEGSTQQQLQWLAAKADAQLQATAAIKPHVPPQWQLMSWATPSDSLKVALSVMLTAANSISGSSTRFTLLFKTAPPPEITAGMVNEMGSLSDHLASSLAVALAPEQGVSPSLAVAIIGAVRAVQVALLELVKSVAAGPSTEPEWNHLTGALWEACKGVAEVPTTNKLAVRMQLMCVSMSIKDTIDEFKAALEAAEAADGGLSGEVSALSISGSADNQSHEPGKTADSARDEAVDSFDDLVDYMDGEGADEDAMSPAEAEAAAAVVELLRTSRACIKTANDAMAAATGSGAARGVMAWAGPLCEEVQSLAEQVGDVGMALYPPMEGAAVVAAADGFGARVTACLDKVDAAQERDAAAVEHLRGVLTERLDAKPTRATRLSPANRCRKAAAATADGGSCG
Sbjct:    1 MSALAEGSTQQQLQWLAAKADAQLQATAAIKPHVPPQWQLMSWATPSDSLKVALSVMLTAANSISGSSTRFTLLFKTAPPPEITAGMVNEMGSLSDHLASSLAVALAPEQGVSPSLAVAIIGAVRAVQVALLELVKSVAAGPSTEPEWNHLTGALWEACKGVAEVPTTNKLAVRMQLMCVSMSIKDTIDEFKAALEAAEAADGGLSGEVSALSISGSADNQSHEPGKTADSARDEAVDSFDDLVDYMDGEGADEDAMSPAEAEAAAAVVELLRTSRACIKTANDAMAAATGSGAARGVMAWAGPLCEEVQSLAEQVGDVGMALYPPMEGAAVVAAADGFGARVTACLDKVDAAQERDAAAVEHLRGVLTERLDAKPTRATRLSPANRCRKAAAATADGGSCG 402          
BLAST of jgi.p|Trimin1|353026 vs. uniprot
Match: A0A6H5KEE9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KEE9_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.390e-23
Identity = 108/348 (31.03%), Postives = 164/348 (47.13%), Query Frame = 0
Query:   43 WATPSDSLKVALSVMLTAANSISGSSTRFTLLFKTAPPPEITAGMVNEMGSLSDHLASSLAVALAPEQGVSPSLAVAIIGAVRAVQVALLELVKSVAAGPSTEPEWNHLTGALWEACKGVAEVPTTNKLAVRMQLMCVSMSIKDTIDEFKAALEAAEAADGGLSGEVSALSISGSADNQSHEPGKTADSARDE--AVDSFDDLVDYMDGEGADEDAMSPAEAEAAAAVVELLRTSRACIKTANDAM---------------AAATGSGAARGVMAWAGPLCEEVQSLAEQVGDVGMALYPPMEGAAVVAAADGFGARVTACLDKVDAAQERDAAAVEH-LRGVLTERL 372
            W+  S+ + VAL V+  A+ SI    TR  L++K  P    +  M  EMG     + +SL   L    G S S+       VRAV  ++ +L+ ++   PS     N LTG +W+ CK + + P TNKLA R Q+M  S+++KDTIDEF   +EAA+ A    +G+  +    G  D Q         +   E  A  +FDD     D +G DE+    AE     A V++LR  R C+K AND++               A   G G  +G + WA  +   +    E  G+VG+ LYPP++G  ++  A+     + A  +   A  E   + +E  LR  + E+L
Sbjct:   38 WSKNSEDVDVALRVIGAASQSIHDGVTRLNLVYKANPSEVASESMSREMGGFCQQMVASLT--LLSSVGASKSMVTYFSAGVRAVLHSVKDLIGAL-LDPSRHARLNGLTGTVWQTCKELQQAPKTNKLACRRQMMQWSVAVKDTIDEF---VEAAKTAAMANAGKSESAGDKGGLDEQFAAKVTVGGAGEGEVGAEGTFDDF----DFDGMDEN-YGAAELSCVEASVDVLRVFRRCLKAANDSLNSLDSPEPQEESGATAGPAGEGWLQGKLEWAKSVQTHLDDANECAGEVGVLLYPPLDGGELLGRANDLEKSLAAFFEVFSAGGEGTNSEMESPLRKAVVEKL 374          
BLAST of jgi.p|Trimin1|353026 vs. uniprot
Match: A0A7S2V7F1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7F1_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.460e-5
Identity = 28/65 (43.08%), Postives = 44/65 (67.69%), Query Frame = 0
Query:   42 SWATPSDSLKVALSVMLTAANSISGSSTRFTLLFKTAPPPEITAGMVNEMGSLSDHLASSLAVAL 106
            SW+ PS+ L+ AL+V+ TA NSIS SST+F LLFK +P  E  + +  E+ S  + L++++ + L
Sbjct:   45 SWSKPSEHLETALTVIFTANNSISNSSTKFALLFKASPNVEQASSICKELSSSCEKLSTAVRILL 109          
BLAST of jgi.p|Trimin1|353026 vs. uniprot
Match: F0WAH9_9STRA (Uncharacterized protein AlNc14C46G3704 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WAH9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.020e-5
Identity = 48/161 (29.81%), Postives = 79/161 (49.07%), Query Frame = 0
Query:   43 WATPSDSLKVALSVMLTAANSISGSSTRFTLLFKTAPPPEITAGMVNEMGSLSDHLASSLAVALAPEQGVSPSLAVAIIGAVRAVQVALLELVKSVAAGPSTE-PEWNHLTGALWEACKGVAEVPTTNKLAVRMQLMCVSMSIKDTIDEFKAALEAAEAAD 202
            W T ++S  +   V++ AA SIS   T+F+++    P  E    M   +    +   S++  AL    GV PSLA +I+ +   +  +L EL  ++        PE   LTG +W++CK V E+PT+N  + +   +     + D+I E K  LEA +  D
Sbjct:   40 WDT-TESFTITRQVLIAAAGSISHEITKFSMVHTKNPSVEEAQSMCKSLRKPCEQFFSAVKTALFC--GVGPSLAASIVQSSIRIFHSLRELTTALQKEEMRRVPE---LTGRIWDSCKSVEEIPTSNHASFQRNTLETLSMLGDSIKELKECLEATKETD 194          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353026 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CN71_9STRA7.320e-264100.00Grap2 and cyclin-D-interacting-domain-containing p... [more]
A0A6H5KEE9_9PHAE1.390e-2331.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V7F1_9STRA7.460e-543.08Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
F0WAH9_9STRA8.020e-529.81Uncharacterized protein AlNc14C46G3704 n=1 Tax=Alb... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1420.10Talin, central domaincoord: 46..163
e-value: 2.0E-5
score: 26.3
NoneNo IPR availableGENE3D1.20.1410.10I/LWEQ domaincoord: 164..374
e-value: 4.1E-19
score: 71.2
NoneNo IPR availablePFAMPF13324GCIPcoord: 60..335
e-value: 9.3E-30
score: 104.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 212..235
IPR026907Cyclin-D1-binding protein 1PANTHERPTHR15492CYCLIN D1-BINDING PROTEIN 1coord: 33..355

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_141contigContig_141:139918..143232 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353026mRNA_13369Tribonema minus UTEX_B_3156 mRNAContig_141 139918..143232 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353026|estExt_Genemark1.C_Ctg_1410024 ID=Trimin1|353026|estExt_Genemark1.C_Ctg_1410024|Name=jgi.p|Trimin1|353026|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=403bp
MSALAEGSTQQQLQWLAAKADAQLQATAAIKPHVPPQWQLMSWATPSDSL
KVALSVMLTAANSISGSSTRFTLLFKTAPPPEITAGMVNEMGSLSDHLAS
SLAVALAPEQGVSPSLAVAIIGAVRAVQVALLELVKSVAAGPSTEPEWNH
LTGALWEACKGVAEVPTTNKLAVRMQLMCVSMSIKDTIDEFKAALEAAEA
ADGGLSGEVSALSISGSADNQSHEPGKTADSARDEAVDSFDDLVDYMDGE
GADEDAMSPAEAEAAAAVVELLRTSRACIKTANDAMAAATGSGAARGVMA
WAGPLCEEVQSLAEQVGDVGMALYPPMEGAAVVAAADGFGARVTACLDKV
DAAQERDAAAVEHLRGVLTERLDAKPTRATRLSPANRCRKAAAATADGGS
CG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026907CCNDBP1