Trimin1|353021|estExt_Genemark1.C_Ctg_1410014 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353021
Unique NameTrimin1|353021|estExt_Genemark1.C_Ctg_1410014
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length546
Homology
BLAST of jgi.p|Trimin1|353021 vs. uniprot
Match: A0A835ZAD5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAD5_9STRA)

HSP 1 Score: 918 bits (2372), Expect = 0.000e+0
Identity = 545/545 (100.00%), Postives = 545/545 (100.00%), Query Frame = 0
Query:    1 MRPLTTQPEEQGLILAYLQSWAVNGGHLAVASARLLAAIGKTLARRLPLLWDNVVFEVAGLPEDLSAQLVLSQEPYAAQALACQALKEAGRWLGHWAVYSDLRRKACSFELGPVPGRVLSLPCAAPRPSWLSRLLSSGAGXXXXXXXXXXXXACAGGTCFVAVGAQRAPEILVQGAVARGLPLQCQAVSEPVLRRVRLPGLQEWAPEGLLLPVRVLASLAAVLIMLHAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAESRAFHFVLSAVVGCAIAALVVGYVAFNLGRKLADAVPGVAFARSAXXXXXXXXVALAXXXXXXXXXXXXGMAALLSAPLGAAAYAATIHRAAALLLDVSLAFWHFGAFGVAWLGKLYFAGSALAGVLVTWRWGLLREPAEGGGWRALLNAQANVQRAVTAVGLALLLASTTDVEAAAAIAGAALLREWAAYIWWRARVWYDNIGVAPHCEQIGHTEYEMQGRSYTDAQIAKLRAYIQKNPLAYRKVKPSKWSAMDHFRQGFPHVSRGGGDACEDDAPERAWRVSQ 545
            MRPLTTQPEEQGLILAYLQSWAVNGGHLAVASARLLAAIGKTLARRLPLLWDNVVFEVAGLPEDLSAQLVLSQEPYAAQALACQALKEAGRWLGHWAVYSDLRRKACSFELGPVPGRVLSLPCAAPRPSWLSRLLSSGAGXXXXXXXXXXXXACAGGTCFVAVGAQRAPEILVQGAVARGLPLQCQAVSEPVLRRVRLPGLQEWAPEGLLLPVRVLASLAAVLIMLHAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAESRAFHFVLSAVVGCAIAALVVGYVAFNLGRKLADAVPGVAFARSAXXXXXXXXVALAXXXXXXXXXXXXGMAALLSAPLGAAAYAATIHRAAALLLDVSLAFWHFGAFGVAWLGKLYFAGSALAGVLVTWRWGLLREPAEGGGWRALLNAQANVQRAVTAVGLALLLASTTDVEAAAAIAGAALLREWAAYIWWRARVWYDNIGVAPHCEQIGHTEYEMQGRSYTDAQIAKLRAYIQKNPLAYRKVKPSKWSAMDHFRQGFPHVSRGGGDACEDDAPERAWRVSQ
Sbjct:    1 MRPLTTQPEEQGLILAYLQSWAVNGGHLAVASARLLAAIGKTLARRLPLLWDNVVFEVAGLPEDLSAQLVLSQEPYAAQALACQALKEAGRWLGHWAVYSDLRRKACSFELGPVPGRVLSLPCAAPRPSWLSRLLSSGAGXXXXXXXXXXXXACAGGTCFVAVGAQRAPEILVQGAVARGLPLQCQAVSEPVLRRVRLPGLQEWAPEGLLLPVRVLASLAAVLIMLHAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAESRAFHFVLSAVVGCAIAALVVGYVAFNLGRKLADAVPGVAFARSAXXXXXXXXVALAXXXXXXXXXXXXGMAALLSAPLGAAAYAATIHRAAALLLDVSLAFWHFGAFGVAWLGKLYFAGSALAGVLVTWRWGLLREPAEGGGWRALLNAQANVQRAVTAVGLALLLASTTDVEAAAAIAGAALLREWAAYIWWRARVWYDNIGVAPHCEQIGHTEYEMQGRSYTDAQIAKLRAYIQKNPLAYRKVKPSKWSAMDHFRQGFPHVSRGGGDACEDDAPERAWRVSQ 545          
BLAST of jgi.p|Trimin1|353021 vs. uniprot
Match: D8LRC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC3_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.380e-9
Identity = 53/141 (37.59%), Postives = 70/141 (49.65%), Query Frame = 0
Query:  355 LLDVSLAFWHFGAFGVAWLGKLYFAGSALAGVLVTWRWGLLREPAEG--GGWRALLNAQANVQRAVTAVGLALLLASTTDVEAAAAIAGAALLREWAAYIWWRARVWYDNIGVAPHCEQIGHTEYEMQGRSYTDAQIAKLR 493
            L  V LAFW  G     W GK +FA S LAGVL TWR GL  E A+   G W    N QA ++R +T  G+ L+    +D +   A+   AL+    A+   R  +W ++        Q+   EYE QG +YT   IA LR
Sbjct:  440 LPGVMLAFWKMGLSSFPWAGKAFFAASGLAGVLTTWRQGLFLEEADEARGTW---FNGQACIRRVLTFSGVFLVYNGVSDTDVGMALVVLALMAPTLAHYARRYNMWCNSSRWYRAGNQLSQEEYEAQGDAYTREAIAALR 577          
BLAST of jgi.p|Trimin1|353021 vs. uniprot
Match: A0A7S2AQW5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AQW5_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.450e-9
Identity = 55/184 (29.89%), Postives = 86/184 (46.74%), Query Frame = 0
Query:  355 LLDVSLAFWHFG-------AFGVAWLGKLYFAGSALAGV-LVTWRWGLLR---EPAEGGGWRALLNAQANVQRAVTAVGLALLLASTTDVEAAAAIAGAALLREWAAYIWWRARVWYDNIGVAPH-CEQIGHTEYEMQGRSYTDAQIAKLRAYIQKNPLAYRKVKPSKWSAMDHFRQGFPHVSR 526
            L D+ L FWH G        + + WLGK YF   AL G+    WR G  R   +  E   W      Q  + + + ++ +  LL ST   E +  +    L   W   IW   RV +     +P+   QI  + YE Q + YT+A++++LRAY+Q +P    ++ P   + + +F +G  HV R
Sbjct:    2 LFDLLLTFWHKGLSPLGIVGWELPWLGKFYFTCGALTGLGFERWR-GCFRYSCDEFEDNNWNTGRCGQLYLLKGIRSMAVICLLHSTASFELSLLVV--LLACRWD-LIWHGFRVVHHKFNRSPYYASQISRSAYEEQSKEYTEAEVSRLRAYLQTDPEQMYRLDPQTQALVRNFSRGADHVVR 181          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353021 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZAD5_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LRC3_ECTSI1.380e-937.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2AQW5_9STRA3.450e-929.89Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_141contigContig_141:88922..96019 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353021mRNA_13359Tribonema minus UTEX_B_3156 mRNAContig_141 88922..96097 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353021|estExt_Genemark1.C_Ctg_1410014 ID=Trimin1|353021|estExt_Genemark1.C_Ctg_1410014|Name=jgi.p|Trimin1|353021|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=546bp
MRPLTTQPEEQGLILAYLQSWAVNGGHLAVASARLLAAIGKTLARRLPLL
WDNVVFEVAGLPEDLSAQLVLSQEPYAAQALACQALKEAGRWLGHWAVYS
DLRRKACSFELGPVPGRVLSLPCAAPRPSWLSRLLSSGAGSSSGGDGGGG
ACACAGGTCFVAVGAQRAPEILVQGAVARGLPLQCQAVSEPVLRRVRLPG
LQEWAPEGLLLPVRVLASLAAVLIMLHAEDWAPEGVLLPVRALASLAAVL
IVLRAEDVAESRAFHFVLSAVVGCAIAALVVGYVAFNLGRKLADAVPGVA
FARSAWLADAVPGVALADAVPGVAFARYAGMAALLSAPLGAAAYAATIHR
AAALLLDVSLAFWHFGAFGVAWLGKLYFAGSALAGVLVTWRWGLLREPAE
GGGWRALLNAQANVQRAVTAVGLALLLASTTDVEAAAAIAGAALLREWAA
YIWWRARVWYDNIGVAPHCEQIGHTEYEMQGRSYTDAQIAKLRAYIQKNP
LAYRKVKPSKWSAMDHFRQGFPHVSRGGGDACEDDAPERAWRVSQ*
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