mRNA_4308 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|144826
Unique NamemRNA_4308
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|144826 vs. uniprot
Match: A0A836CPE3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPE3_9STRA)

HSP 1 Score: 542 bits (1396), Expect = 4.950e-195
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 1 
Query:    1 RFLQWLRENGATWDKLEWPSYATASGSRGAIATADIAPGEPFLCVPERCMLTPPQAQRLPCVGPVFAAEAEGLLRGDAALALYVMHELLRGDASFYAPYLAVLPAPHTAEDWDATAVAVLQDERLAASADARSRQLTRAWERTMSALAASYPGMFPRETYTLALWRRAWGVIRARAFGRRLPWSALVPLADCLNHGNVPTKYDFDAGGNGVFRLWPSGGGSASVAVPRGCEALNSYGRRSNAHLLLEYGFAMLDNEWDEVAVPLS 795
            RFLQWLRENGATWDKLEWPSYATASGSRGAIATADIAPGEPFLCVPERCMLTPPQAQRLPCVGPVFAAEAEGLLRGDAALALYVMHELLRGDASFYAPYLAVLPAPHTAEDWDATAVAVLQDERLAASADARSRQLTRAWERTMSALAASYPGMFPRETYTLALWRRAWGVIRARAFGRRLPWSALVPLADCLNHGNVPTKYDFDAGGNGVFRLWPSGGGSASVAVPRGCEALNSYGRRSNAHLLLEYGFAMLDNEWDEVAVPLS
Sbjct:    1 RFLQWLRENGATWDKLEWPSYATASGSRGAIATADIAPGEPFLCVPERCMLTPPQAQRLPCVGPVFAAEAEGLLRGDAALALYVMHELLRGDASFYAPYLAVLPAPHTAEDWDATAVAVLQDERLAASADARSRQLTRAWERTMSALAASYPGMFPRETYTLALWRRAWGVIRARAFGRRLPWSALVPLADCLNHGNVPTKYDFDAGGNGVFRLWPSGGGSASVAVPRGCEALNSYGRRSNAHLLLEYGFAMLDNEWDEVAVPLS 265
[Close]
BLAST of jgi.p|Trimin1|144826 vs. uniprot
Match: W2Z914_PHYPR (SET domain-containing protein n=1 Tax=Phytophthora parasitica P10297 TaxID=1317064 RepID=W2Z914_PHYPR)

HSP 1 Score: 263 bits (671), Expect = 4.120e-83
Identity = 131/264 (49.62%), Postives = 174/264 (65.91%), Query Frame = 1 
Query:    1 RFLQWLRENGATWDKLEWPSYATASGSRGAIATADIAPGEPFLCVPERCMLTPPQAQRLPCVGPVFAAEAEGLLRGDAALALYVMHELLRGDASFYAPYLAVLPAPHTAEDWDATAVAVLQDERLAASADARSRQLTRAWERTMSALAASYPGMFPRETYTLALWRRAWGVIRARAFGRRLPWSALVPLADCLNHGNVPTKYDFDAGGNGVFRLWPSGGGSASVAVPRGCEALNSYGRRSNAHLLLEYGFAMLDNEWDEVAVPL 792
            RFLQWLR+NGAT+ KLEWP   T +G RGA+AT  I  GEP LC+P R +++     + P +GPVF    +   R D  +AL+++ ELL  ++SF+ PYL++LP P + +DW    +  L DERL  +A  RS +++  + R ++ L   YPG FP   YT   ++ AW  I+AR FGRRLPW+ALVP ADCLNH NV TKYDFD   NG+FRL+PS    A+ +  +G E  NSYGRRSN  L+L+YGFA+ DNEWD V V +
Sbjct:    7 RFLQWLRDNGATFPKLEWP-VTTPNGLRGAVATETITTGEPMLCIPRRLLISEELCWQDPQLGPVFRDNRDVFTRDDPVMALFIVRELLLKESSFFHPYLSILPYPESVQDWTHDELHELYDERLVDAAARRSSEVSIYYRRVLTRLQEKYPGEFPETLYTFDKFKFAWKTIQARTFGRRLPWTALVPFADCLNHNNVSTKYDFDVNDNGLFRLYPS----AATSFVKGAEVFNSYGRRSNFQLMLDYGFALTDNEWDYVDVEI 265
[Close]
BLAST of jgi.p|Trimin1|144826 vs. uniprot
Match: W2Q7U8_PHYPN (SET domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2Q7U8_PHYPN)

HSP 1 Score: 261 bits (667), Expect = 4.730e-82
Identity = 130/264 (49.24%), Postives = 173/264 (65.53%), Query Frame = 1 
Query:    1 RFLQWLRENGATWDKLEWPSYATASGSRGAIATADIAPGEPFLCVPERCMLTPPQAQRLPCVGPVFAAEAEGLLRGDAALALYVMHELLRGDASFYAPYLAVLPAPHTAEDWDATAVAVLQDERLAASADARSRQLTRAWERTMSALAASYPGMFPRETYTLALWRRAWGVIRARAFGRRLPWSALVPLADCLNHGNVPTKYDFDAGGNGVFRLWPSGGGSASVAVPRGCEALNSYGRRSNAHLLLEYGFAMLDNEWDEVAVPL 792
            RFLQWLR+NGAT+ KLEWP   T +G RGA+AT  I  GEP LC+P R +++     + P +GPVF    +   R D  + L+++ ELL  ++SF+ PYL++LP P + +DW    +  L DERL  +A  RS +++  + R ++ L   YPG FP   YT   ++ AW  I+AR FGRRLPW+ALVP ADCLNH NV TKYDFD   NG+FRL+PS    A+ +  +G E  NSYGRRSN  L+L+YGFA+ DNEWD V V +
Sbjct:    7 RFLQWLRDNGATFPKLEWP-VTTPNGLRGAVATETITTGEPMLCIPRRLLISEELCWQDPQLGPVFRDNRDVFTRDDPVMVLFIVRELLLKESSFFHPYLSILPYPESVQDWTHDELHELYDERLVDAAARRSSEVSIYYRRVLTRLQEKYPGEFPETLYTFDKFKFAWKTIQARTFGRRLPWTALVPFADCLNHNNVSTKYDFDVNDNGLFRLYPS----AATSFVKGAEVFNSYGRRSNFQLMLDYGFALTDNEWDYVDVEI 265
[Close]
BLAST of jgi.p|Trimin1|144826 vs. uniprot
Match: G4ZIF2_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZIF2_PHYSP)

HSP 1 Score: 261 bits (666), Expect = 7.930e-82
Identity = 133/264 (50.38%), Postives = 170/264 (64.39%), Query Frame = 1 
Query:    1 RFLQWLRENGATWDKLEWPSYATASGSRGAIATADIAPGEPFLCVPERCMLTPPQAQRLPCVGPVFAAEAEGLLRGDAALALYVMHELLRGDASFYAPYLAVLPAPHTAEDWDATAVAVLQDERLAASADARSRQLTRAWERTMSALAASYPGMFPRETYTLALWRRAWGVIRARAFGRRLPWSALVPLADCLNHGNVPTKYDFDAGGNGVFRLWPSGGGSASVAVPRGCEALNSYGRRSNAHLLLEYGFAMLDNEWDEVAVPL 792
            RFLQWLR+NGAT+ KL+WP   + +G RG +A A +A GEP LC+P R +++     R P +G VF    +   R D  LAL+++ ELL  D SF+ PYLAVLP P + +DW    +  L DERL  +A  R+ ++   + R M  L   YPG FP   YT   ++ AW  I+AR FGRRLPW+ALVP ADCLNH NV TKYDFD   NG+FRL+PSG    + +  +G E  NSYGRRSN  LLL+YGFA+ DNEWD V V +
Sbjct:   13 RFLQWLRDNGATFPKLQWP-VTSPNGLRGTVAAAAVASGEPMLCIPRRLLISEDLCWRDPQLGRVFQDNRDVFTRDDPVLALFLVRELLLADRSFFHPYLAVLPYPESVQDWTQAELGELHDERLVDAAARRTSEIDVYYRRVMVRLQTKYPGEFPEALYTFDRFKFAWKTIQARTFGRRLPWTALVPFADCLNHTNVATKYDFDVNDNGLFRLYPSG----ATSFAQGAEVFNSYGRRSNFQLLLDYGFALPDNEWDYVDVEI 271
[Close]
BLAST of jgi.p|Trimin1|144826 vs. uniprot
Match: A0A225UML7_9STRA (SET domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UML7_9STRA)

HSP 1 Score: 258 bits (660), Expect = 1.270e-81
Identity = 131/265 (49.43%), Postives = 174/265 (65.66%), Query Frame = 1 
Query:    1 RFLQWLRENGATWDKLEWPSYATASGSRGAIATADIAPGEPFLCVPERCMLTPPQAQRLPCVGPVFAAEAEGLLRGDAALALYVMHELLRGDASFYAPYLAVLPAPHTAEDWDATAVAVLQDERLAASADARSRQLTRAWERTMSALAASYPGMFPRETYTLALWRRAWGVIRARAFGRRLPWSALVPLADCLNHGNVPTKYDFDAGGNGVFRLWPSGGGSASVAVPRGCEALNSYGRRSNAHLLLEYGFAMLDNEWDEVAVPLS 795
            RFLQWLR+NGAT+ KL+WP+  T +G RGA+A  DIA  EP +CVP   +++     + P +  V+    +   R D  L L++M EL+ G+ SF+ PYL++LP P + +DW+   +  L D+RL A+A  RS ++   ++R M+ L   YPG FP   YTL  +R AW  I+AR FGRRLPW+ALVP ADCLNH NV TKYDFD   NG+FRL+PS    +S    +G E  NSYGRR+N  LLL+YGFA+ DNEWD V V +S
Sbjct:   14 RFLQWLRDNGATFPKLQWPT-TTPNGLRGAVALEDIATDEPMICVPRSLLISEHLCWQDPQLQCVYRDNRDVFTRDDPVLTLFIMRELVLGERSFFHPYLSILPYPESVQDWNVDELRELHDDRLVAAAARRSSEINVYYDRVMTRLQQKYPGEFPETLYTLDKFRFAWKTIQARTFGRRLPWTALVPFADCLNHSNVATKYDFDVDENGMFRLYPS----SSTCFAKGEEVFNSYGRRANFQLLLDYGFALPDNEWDYVDVEIS 273
[Close]
BLAST of jgi.p|Trimin1|144826 vs. uniprot
Match: H3H3P1_PHYRM (SET domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H3P1_PHYRM)

HSP 1 Score: 258 bits (660), Expect = 5.040e-81
Identity = 133/264 (50.38%), Postives = 170/264 (64.39%), Query Frame = 1 
Query:    1 RFLQWLRENGATWDKLEWPSYATASGSRGAIATADIAPGEPFLCVPERCMLTPPQAQRLPCVGPVFAAEAEGLLRGDAALALYVMHELLRGDASFYAPYLAVLPAPHTAEDWDATAVAVLQDERLAASADARSRQLTRAWERTMSALAASYPGMFPRETYTLALWRRAWGVIRARAFGRRLPWSALVPLADCLNHGNVPTKYDFDAGGNGVFRLWPSGGGSASVAVPRGCEALNSYGRRSNAHLLLEYGFAMLDNEWDEVAVPL 792
            RFLQWL ENG T+ KL+WP+  T +G RGA+AT  IA  EP LCVP R +++     R P +GPVF    +   R D  LAL+++ ELL  + SF+ PYLA+LP P + +DW    +  L D+RL  +A  RS ++   + R M+ L   YP  FP   YTL  ++ AW  I+AR FGRRLPW+ALVP ADCLNH NV TKYDF    NGVFRL+PSG    + +  +G E  NSYGRRSN  L+L+YGFA+ DNEWD V V +
Sbjct:    7 RFLQWLHENGTTFPKLQWPA-TTPNGLRGAVATEHIATAEPMLCVPRRLLISEDLCWRDPQLGPVFLDNRDVFSRDDPVLALFIVRELLLEERSFFHPYLAILPYPESVQDWTQDELRELHDQRLVEAAARRSTEIQVYYRRVMTRLQEKYPDEFPETLYTLDKFKFAWKTIQARTFGRRLPWTALVPFADCLNHTNVATKYDFGVDDNGVFRLYPSG----TTSFAKGEEVFNSYGRRSNFQLMLDYGFALADNEWDYVDVEI 265
[Close]
BLAST of jgi.p|Trimin1|144826 vs. uniprot
Match: A0A833WJK7_PHYIN (SET domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WJK7_PHYIN)

HSP 1 Score: 258 bits (658), Expect = 5.500e-81
Identity = 130/264 (49.24%), Postives = 172/264 (65.15%), Query Frame = 1 
Query:    1 RFLQWLRENGATWDKLEWPSYATASGSRGAIATADIAPGEPFLCVPERCMLTPPQAQRLPCVGPVFAAEAEGLLRGDAALALYVMHELLRGDASFYAPYLAVLPAPHTAEDWDATAVAVLQDERLAASADARSRQLTRAWERTMSALAASYPGMFPRETYTLALWRRAWGVIRARAFGRRLPWSALVPLADCLNHGNVPTKYDFDAGGNGVFRLWPSGGGSASVAVPRGCEALNSYGRRSNAHLLLEYGFAMLDNEWDEVAVPL 792
            RFLQWL++NGAT+ KL+WP  AT +G RGA+AT DIA  EP L +P   +++     + P +GPVF +  +   R D  +AL+++ ELL    SF+ PYLA+LP+P + +DW    +  L DERL  +A  RS ++   + R M+ L   Y G FP   YT   ++ AW  I+AR FGRRLPW+ALVPLADCLNH  V TKYDFD  G+G+FRL+PS    A+ +  +  E  NSYGRRSN  LLL+YGFA+ DNEWD V V +
Sbjct:    8 RFLQWLQDNGATFPKLQWP-VATPNGLRGAVATEDIATNEPMLSIPRHLLISEEMCWQDPQLGPVFRSNRDVFTRDDPVMALFIVRELLLEQRSFFHPYLAILPSPESVQDWTHDELRELHDERLVGAAVRRSSEINIYYRRVMTRLQEKYAGEFPETLYTFDKFKFAWKTIQARTFGRRLPWTALVPLADCLNHNTVATKYDFDVNGSGLFRLYPS----ATTSFAKDSEVFNSYGRRSNFQLLLDYGFALTDNEWDYVDVEI 266
[Close]
BLAST of jgi.p|Trimin1|144826 vs. uniprot
Match: A0A2P4WWD4_9STRA (SET domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWD4_9STRA)

HSP 1 Score: 256 bits (655), Expect = 1.310e-80
Identity = 132/265 (49.81%), Postives = 170/265 (64.15%), Query Frame = 1 
Query:    1 RFLQWLRENGATWDKLEWPSYATASGSRGAIATADIAPGEPFLCVPERCMLTPPQAQRLPCVGPVFAAEAEGLLRGDAALALYVMHELLRGDASFYAPYLAVLPAPHTAEDWDATAVAVLQDERLAASADARSRQLTRAWERTMSALAASYPGMFPRETYTLALWRRAWGVIRARAFGRRLPWSALVPLADCLNHGNVPTKYDFDAGGNGVFRLWPSGGGSASVAVPRGCEALNSYGRRSNAHLLLEYGFAMLDNEWDEVAVPLS 795
            RFLQWL +NGAT+ KL+WP+  T++G RGA+A  DIA  E  LC+P R +++     + P + PVF    +   R D  LAL+++ ELL  + SF+ PYLA+LP P + +DW    +  L D RL  +A  RS ++   + + M+ L   YP  FP   YTL  +R AW  I+AR FGRRLPW+ALVP ADCLNH NV TKYDFD   NG+FRL+PS    AS    +G E  NSYGRRSN  LLL+YGFA+ DNEWD V V +S
Sbjct:    7 RFLQWLHDNGATFPKLQWPT-TTSNGLRGAVAIEDIAMDELMLCIPRRLLISEELCWQDPQLKPVFLDNRDVFTRDDPVLALFIVRELLLEERSFFHPYLAILPYPESIQDWSLNELQELHDNRLVDAAARRSSEIDVYYRKVMTRLQEKYPDEFPETLYTLDKFRFAWKTIQARTFGRRLPWTALVPFADCLNHSNVATKYDFDVNDNGMFRLYPS----ASTCFAKGTEVFNSYGRRSNFQLLLDYGFALTDNEWDYVDVEIS 266
[Close]
BLAST of jgi.p|Trimin1|144826 vs. uniprot
Match: A0A5D6XWK1_9STRA (SET domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWK1_9STRA)

HSP 1 Score: 255 bits (651), Expect = 1.740e-79
Identity = 130/264 (49.24%), Postives = 168/264 (63.64%), Query Frame = 1 
Query:    1 RFLQWLRENGATWDKLEWPSYATASGSRGAIATADIAPGEPFLCVPERCMLTPPQAQRLPCVGPVFAAEAEGLLRGDAALALYVMHELLRGDASFYAPYLAVLPAPHTAEDWDATAVAVLQDERLAASADARSRQLTRAWERTMSALAASYPGMFPRETYTLALWRRAWGVIRARAFGRRLPWSALVPLADCLNHGNVPTKYDFDAGGNGVFRLWPSGGGSASVAVPRGCEALNSYGRRSNAHLLLEYGFAMLDNEWDEVAVPL 792
            RFL WL  NGA + KL+WP+ +     RG +A ADI   EP L +P   +++  +  + P +     A  +   R D  LAL+++ E L+GDASF+APYLA+LP P + +DW    +A L D RL A+A  R  ++  A++   +AL AS+PG FPR  YT   +  AW  I+AR FGRRLPW+ALVP ADCLNH NV TKYDFD   NG+FRL+PS    A+ A   G E  NSYGRRSN HLLL+YGFA+ DNEWD V + L
Sbjct:    8 RFLDWLAANGAVFPKLQWPASSAGGRGRGVVARADITALEPMLQIPAALVISEQRCWQDPQLRVALEANRDVFARDDPVLALFLVREQLKGDASFFAPYLAILPFPESVQDWSDDELAALHDRRLVAAARRRQSEIDAAYDSVFAALDASHPGEFPRAQYTREKFVFAWKTIQARTFGRRLPWTALVPFADCLNHANVATKYDFDVARNGMFRLFPS----AATAYAAGAEVFNSYGRRSNFHLLLDYGFALRDNEWDYVDIEL 267
[Close]
BLAST of jgi.p|Trimin1|144826 vs. uniprot
Match: A0A6A3EG31_9STRA (SET domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3EG31_9STRA)

HSP 1 Score: 254 bits (650), Expect = 1.750e-79
Identity = 131/264 (49.62%), Postives = 171/264 (64.77%), Query Frame = 1 
Query:    1 RFLQWLRENGATWDKLEWPSYATASGSRGAIATADIAPGEPFLCVPERCMLTPPQAQRLPCVGPVFAAEAEGLLRGDAALALYVMHELLRGDASFYAPYLAVLPAPHTAEDWDATAVAVLQDERLAASADARSRQLTRAWERTMSALAASYPGMFPRETYTLALWRRAWGVIRARAFGRRLPWSALVPLADCLNHGNVPTKYDFDAGGNGVFRLWPSGGGSASVAVPRGCEALNSYGRRSNAHLLLEYGFAMLDNEWDEVAVPL 792
            RFLQWL++NGAT+ KL+WP+  T SG RGA+AT+ IA GEP LC+P R +++     R P +  VF    +   R D  L+L+++ E L G  SF+ PYLAVLP P + +DW    +  L D RL  +A  RS ++   + R M+ L + YPG FP   YT   ++ AW  I+AR FGRRLPW+ALVP ADCLNH NV T+YD D   NG+FRL+PS    AS +  +G E  NSYGRR+N  LLL+YGFA+ DNEWD V V +
Sbjct:    8 RFLQWLQDNGATFPKLQWPT-TTPSGLRGAVATSAIATGEPMLCIPRRLLISEDLCWRDPQLRCVFQDNRDVFTRDDPVLSLFLVREQLLGARSFFQPYLAVLPYPESVQDWTQDELRELHDGRLVDAAARRSSEIDVYYRRVMNRLQSKYPGEFPEALYTFDRFKFAWKTIQARTFGRRLPWTALVPFADCLNHTNVATRYDLDVDDNGLFRLYPS----ASTSFAKGAEVFNSYGRRANFQLLLDYGFALFDNEWDYVDVEI 266
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144826 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CPE3_9STRA4.950e-195100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
W2Z914_PHYPR4.120e-8349.62SET domain-containing protein n=1 Tax=Phytophthora... [more]
W2Q7U8_PHYPN4.730e-8249.24SET domain-containing protein n=8 Tax=Phytophthora... [more]
G4ZIF2_PHYSP7.930e-8250.38Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A225UML7_9STRA1.270e-8149.43SET domain-containing protein (Fragment) n=1 Tax=P... [more]
H3H3P1_PHYRM5.040e-8150.38SET domain-containing protein n=1 Tax=Phytophthora... [more]
A0A833WJK7_PHYIN5.500e-8149.24SET domain-containing protein n=2 Tax=Phytophthora... [more]
A0A2P4WWD4_9STRA1.310e-8049.81SET domain-containing protein n=1 Tax=Phytophthora... [more]
A0A5D6XWK1_9STRA1.740e-7949.24SET domain-containing protein n=1 Tax=Pythium bras... [more]
A0A6A3EG31_9STRA1.750e-7949.62SET domain-containing protein n=2 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_10contigContig_10:900237..906177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|144826|gw1.10.155.1
BRITEko00000,ko00001,ko01000,ko03036
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
KEGG koko:K19199
EC2.1.1.43
Descriptionpeptidyl-lysine monomethylation
COG categoryS
Max annot lvl4776|Peronosporales
EggNOG OGsKOG1337@1|root,KOG1337@2759|Eukaryota,3QAYT@4776|Peronosporales
Evalue1.94e-83
Seed ortholog4792.ETI45878
Hectar predicted targeting categoryother localisation
TranscriptId145148
TrackFilteredModels1
ProteinId144826
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144826gene_4308Tribonema minus UTEX_B_3156 geneContig_10 900237..906177 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144826Trimin1|144826|gw1.10.155.1Tribonema minus UTEX_B_3156 polypeptideContig_10 900237..906177 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4308_5exon_4308_5Tribonema minus UTEX_B_3156 exonContig_10 900237..900393 -
exon_4308_4exon_4308_4Tribonema minus UTEX_B_3156 exonContig_10 902620..902808 -
exon_4308_3exon_4308_3Tribonema minus UTEX_B_3156 exonContig_10 903816..903928 -
exon_4308_2exon_4308_2Tribonema minus UTEX_B_3156 exonContig_10 904784..905049 -
exon_4308_1exon_4308_1Tribonema minus UTEX_B_3156 exonContig_10 906108..906177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4308CDS_4308Tribonema minus UTEX_B_3156 CDSContig_10 906108..906177 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4308 ID=mRNA_4308|Name=jgi.p|Trimin1|144826|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=795bp|location=Sequence derived from alignment at Contig_10:900237..906177- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGTTCCTGCAGTGGCTGAGAGAAAATGGGGCGACGTGGGATAAGCTGGA
GTGGCCATCCTATGCCACAGCCAGCGGTTCGCGTGGCGCCATCGCCACCG
CAGACATCGCCCCCGGAGAGCCCTTCCTGTGCGTGCCGGAGCGCTGCATG
CTGACACCGCCGCAGGCGCAGCGGCTGCCGTGCGTGGGCCCCGTTTTTGC
GGCGGAGGCGGAGGGCCTGCTGCGCGGCGACGCCGCGCTGGCGCTGTACG
TCATGCACGAGTTGCTGCGCGGCGACGCGTCGTTCTACGCGCCGTACCTC
GCCGTGCTGCCTGCGCCGCACACCGCGGAGGACTGGGATGCGACTGCCGT
GGCAGTGCTCCAGGACGAGCGCCTCGCGGCGAGCGCTGATGCGCGGAGTC
GGCAGCTTACGCGCGCCTGGGAGCGCACCATGAGCGCACTCGCCGCCAGC
TACCCAGGCATGTTCCCGCGCGAAACATATACGCTGGCGCTGTGGCGGCG
CGCGTGGGGCGTCATTCGCGCGCGCGCCTTCGGGCGCCGCCTGCCGTGGA
GCGCGCTCGTGCCGCTCGCAGACTGCCTCAACCACGGCAACGTGCCCACC
AAGTACGACTTTGACGCTGGGGGCAACGGCGTTTTCAGGCTTTGGCCCAG
CGGCGGCGGCAGTGCCAGCGTCGCCGTGCCGCGCGGCTGTGAGGCGCTCA
ACTCGTACGGGCGCCGCAGCAACGCTCACCTGCTGCTGGAGTACGGCTTT
GCGATGCTCGACAACGAGTGGGACGAGGTCGCCGTTCCGCTGAGC
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protein sequence of jgi.p|Trimin1|144826

>Trimin1|144826|gw1.10.155.1 ID=Trimin1|144826|gw1.10.155.1|Name=jgi.p|Trimin1|144826|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=265bp
RFLQWLRENGATWDKLEWPSYATASGSRGAIATADIAPGEPFLCVPERCM
LTPPQAQRLPCVGPVFAAEAEGLLRGDAALALYVMHELLRGDASFYAPYL
AVLPAPHTAEDWDATAVAVLQDERLAASADARSRQLTRAWERTMSALAAS
YPGMFPRETYTLALWRRAWGVIRARAFGRRLPWSALVPLADCLNHGNVPT
KYDFDAGGNGVFRLWPSGGGSASVAVPRGCEALNSYGRRSNAHLLLEYGF
AMLDNEWDEVAVPLS
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mRNA from alignment at Contig_10:900237..906177-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4308 ID=mRNA_4308|Name=jgi.p|Trimin1|144826|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5941bp|location=Sequence derived from alignment at Contig_10:900237..906177- (Tribonema minus UTEX_B_3156 )
AGGTTCCTGCAGTGGCTGAGAGAAAATGGGGCGACGTGGGATAAGCTGGA
GTGGCCATCCTATGCCACAGGTATTTCATTACTGAATCTACCATGGTCTT
CAGCTCACGCTCAACGTGTTTTAATGCAGTCGACAGTTGTTCACGGTGCG
AGCTGTGGTGGTGCCCTGCCTATGTGCTAGTATGATATCGTCGACACTCA
GAGGCTTGTTGGCTACAAGAGGAAAGTGCCAGAACGTGCGAACCTGATCT
GCAAAAAAGGGTCTCGCTGGGAGGTGATGCCTTCGTCAACGCTGAACGAG
CAACAGTATATTGGTGATGCACATTTCTCGGTGCACCCCACACAATACTG
TGTTGTTGCAATCAGGACGGCTTCTGTGAACCAGTACCATGTCGCTTCAG
ATGATGGCACTGCTGCAGCAGGCCGATTACATCTGCAACCCTGGCAGGTG
CAGTCATGTTCAAGTGATCAAATGCCCATGCCTTGCAGCACACAGCTCTG
TTTCAGCCAGCACAGTTCTCGTGAGCTATGCCTGCTTGGTCGCTAAGTCG
TCCGCCTCTTGGGTGTAGGGTTTGAGTGGAAGGTGAGGTGGCGGCGCCAT
GCGCTGTTGAATGATGTGCCATCGCCGCTGCTGACATCTTTTTGGCTAAG
CCCTGAGCACTGATGCACGTGCTGAGCGCTGATGCATGCCGCCGCACCTT
CCGCTGGTGTGCAGGCACGCAATTCCAGCTGAGTACACAAAACAGTACAC
CTGAATATTTTTCATATCCCTACACACAGTACACCAAGCGTACAACTGCT
GATGCATTGCGTGGAGCGAGCGCTTAGAGTTGGGGCCAGGGTTAGGGTTA
GGGACAGGCTCGCGTCATCGTACGCAGGCAACATGCAGGGCAAGCACGTG
AAAACTCAGTGCCTACTTGGTCAAGGCTTGAGCCAATCAACGCAGCCCGC
GCTGCGCATCAGAGCCGCTGCGAAAATCGTCCACGGAGAGCCCTTCCTCT
GCGTCCCGGAGCGGTGCATGCTGACACCACCGCACCGCCTGCCATTCATA
CCTACCCCCCCATATGTATATATATATGTACTTCAAGTATATATATATAT
CACGTATGTACGTACCCTGCGCGCGCAGCCAGCGGTTCGCGTGGCGCCAT
CGCCACCGCAGACATCGCCCCCGGAGAGCCCTTCCTGTGCGTGCCGGAGC
GCTGCATGCTGACACCGCCGCAGGCGCAGCGGCTGCCGTGCGTGGGCCCC
GTTTTTGCGGCGGAGGCGGAGGGCCTGCTGCGCGGCGACGCCGCGCTGGC
GCTGTACGTCATGCACGAGTTGCTGCGCGGCGACGCGTCGTTCTACGCGC
CGTACCTCGCCGTGCTGCCTGCGCCGCACACCGCGGAGGACTGGGTGAGC
GCTGCTGCTCTGACGGCGCTGCGCCAATGTTCGCACGCGTACTCGGCGCT
TCACACTACATGACACTTAACGGGCGTTATTCGAGTCTGATATCGCGCTG
CTGCCGGCGCCGCACACCGCGGAGGACTGCGTAAGCGCTGGTGCGCGGTG
CTTGTGCGCACACGACACGGTAACCCTAAACCTAACCCTTACCCTAACCC
TAACCCTCAGCAGTAGGCACACGCGCTGCACACGGCAGAGGACTGCGAGT
GCTGCTGCATGTGCGCATACATGATATCTGCAGTAAGCGGAATGATAACA
TTTGGCGCGCCGTACCTCGCAGTGCTGCCAGCGCCGCAGACGGCGGAGGA
CTGGGTGGGCGCTGCTGCGTGCGCGCATACATGAACTCTGCTGTAAGGCA
GGTTTGTTAGTGTTAAGAGAGTCGTCTACGCGCCGTACCTCGCGGTGCTG
CCGCACACCTAATGGAAACGAATCAAAAGTTCGCAGAGCTCTAGGTGACA
AGGTGTGCTTAGATGTCAAAGTGAATGCCTTCCACCGATAACCGTGGTAG
CCGCTGCTGCTCATCATGCTACACTCTATACCTGCCTATCCTATCTGTCT
CAGGACGCGGCCGCGGTGGCAGCGCTCCAGGACAAGCGCCTTACGGCGAA
TGCCGATGTGTGCTACTTAGTTCACAATATTCGCCGTAATTTATGGCAAA
TACCATGTGCGTTCTGGTTGACGGCTTGATTTATGGCACAAAAAGTCACG
CGTAACTTTACCATGTAAGATTGCAACAACCCTAGGTACACATCGCCCAA
GCAGCTACATCATACTGTATTCTGTACCTACCTACCCCATCTGTCTCAGG
ATGCGACTGCCGTGGCAGTGCTCCAGGACGAGCGCCTCGCGGCGAGCGCT
GATGCGCGGAGTCGGCAGCTTACGCGCGCCTGGGAGCGCACCATGAGCGC
ACTCGCCGCCAGGTGCGAACTTCATGCTGAGTATGTAAACTTCGTATTGA
AGTTTTAGTTGTAGTTGGCTGGGCACACCATCAGCGCGCCCGCTGCCAAC
ATGCGGGCTTCACGCTGGGGGTACGTAATGTACACGTTGAGCAAACTTCA
TGTTGCAGATGAAGTTGTAGTTGGCTGGGAGCGCACCGTGAGCGCGCTCA
CCGCCAGGTGCGCACCTCATGCTATGTAGCGCGAATGTCAAGAAACTCCA
TGTTCAAGTTGTAGTTGTAGTTGCCTGGGAACGCACCATCAGCGCGCTCG
CCGCCAGGTGTAAACTTCACGCTGGTGATATGTAGCGCGAACGTTGGTGA
CCTTCATGTTTTAGCTGAAGTTGCAGCTGGCTGGGAGCGCTCCATTAGCG
CGCTTGCCGCCAGGTGCAAGCTTTACGCTGCAAGTGAGTCGGGCACGCCT
CACAGCACCCCCGGCCCCTCGCTCGCGCGCACATGCAGCTACCCCGGCAT
GGTCCCGCGCGAAACATGTAGTCTACGCTACAGCTGTGGCGGCGCGCGTA
GAGTAAGTCAGTGAGTGAGTAAGTGAGTTGAACATGTCTGACATCAGCCT
TTGGCCCCCCCTCGTGCGCGCAGCTACCCCGGCATGGTCGCGCGCGACAC
GTACACGCCGGACACGTGGCTCGCCTTACACAAGCAAGCACGTCAACAGC
ATGCTTGAAACTCAAATTTTCTCCGATCTGCGTGTGCGCATGCAGCTACC
CCGGCCTGTTCCCGCGCGACACCTATACGCTAGAGCTGTGGCTCACACAA
GCAAGGAAGGCGATCACATCCTCATGGCGCAGACCATCATTTACTCTGAC
CGGCACTTGCTCTTGTGCAGCTACCCCGGCATGTTCCCGCGCGAAACCTG
TAGCTGGCGCTGTGGCGGCGCGCGTGGGGCCTCATACGCACACAAGCAAG
TGAGGAGGTGAATCGGTCATGTCTGATATCAGCCTTTGCCAACTTGCCCC
CCCTCGCGCGCACATGCAGCTACCCAGGCATGTTCCCGCGCGAAACATAT
ACGCTGGCGCTGTGGCGGCGCGCGTGGGGCGTCATTCGCGCGCGCGCCTT
CGGGCGCCGCCTGCCGTGGAGCGCGCTCGTGCCGCTCGCAGACTGCCTCA
ACCACGGCAACGTGCCCACCAAGTACGACTTTGACGCTGGGGGCAACGGC
GTTTTCAGGTGCGCATATTACCATATGCATACCCTACCCAAGCCCTTGTA
TACCTACCCCCATTGTGCTGGCAGACTGCCTCAACCACAGCAACGTGCCC
ACCAAATACGACTTTGATGCTGGCGGCAACGGGGTGTTCAGGTGCGCGGT
CTGCTGCTGCGGTAGCATATGCATACCCTACCCATGCCCTTGCATACCTG
CCCCCGTGGTGCTCGATGACTGTCTCAACCACGGCAACATGCCCAACAAG
TCTGACTTTGGTACCTACGGCAACAGCGCGTTCAGGTGCTCGCTCTGCTG
CTGCGGCCTCCTTTCTCAGAGTCAGGGTCAGGTTCAGGGTGAGGATTAGG
GCTGAGAGCGTAAAGCTCACCACCGTGCCAGAGATGGACAACCGAGGGAC
CAAGCAGACACAAGACTCGCGGCTAGTGCATGTGTTGCTAGAAGTGATCA
TTGAGAACGGAGGAGGCGAACATGAACAGCCACGTCAGCGCTCAACAGGA
CCCAACCTCAACATGAGCTGAGCTGTGCGCTGTCAATGACAAATCTGCAC
AACAGGGGGTTTGCCACATCACAGCAGTTTCTGATGGGCTGCCTATAGCG
CGATCCAAGGCTAGGGTTGCAGTTGGCGACGTGTACAGGTCACAACTGAA
CACCTGGGAGGGTGCGCTGACGCGGCATACCGGCAACACCTGTTAACATC
CGTGAGCGTTCCTTTGAATTGGCGCAACGGCGCTCACCTAACGGTGAATG
AGCTACGTCAGTGCCCAGCAGGACCCAACATCAACATGAGCTGAGCCATG
CGCTGTCAAGGGCAATGTCACCGAGGTGTCCCCTGCACGCTCAGTCAGTT
TGCTTGATGCCACCCATCTGCACCAGCTTCTGGCCCAACGGCGGCTGCAG
CGTTGCCGTGCCGTGCGGCTGTGAGGCGCTCACTTTGTTTGGAGTAGCAC
GCTGATTCGATGTTTCAATGTCACCGCGCTTTCCAAACAAGATTTGCCGC
CAGGCACACGCATACAATGTCTGCCTCTGCAGCTGCGCGGAACTAACGCT
GCTTGTCTGTTGAATCTGCAGCAGGCTTTGGCTCAGCGGCGCGGCCGGCA
CTGGCGGCTGATGCTTCGACGCACTTGCTGTCGCACTCAACAGGTCTTGC
GGCAAGATAAACTATGCTCAGTCAGCGCGAGCAAATGTCCCCTGCACGCT
CTCTCGGTCCGCTTCATGTCACCCATTTGCACCAGGCTCTGGCCCAACGG
CGGCAGCGGCAGCGACAGCAGCGGCGGCGCCGTGCCGCGCTGCCTAACCC
TAACCCTAACCCTAAGGCGCTCAACTTGTATGACAAAGCAAGCCTTTTTG
GGTGTTTTCATGTCACCTACCGCCCCTTTCAAAGCAGATGCTTTGCCGCA
GGCACACGCATACCCTGTCTGCCGCCATAGCAATGCTGACCAAAATACTT
TCTCATTGTTTCTGCACCAGGCTCTGGCACAGCGGCAGCAGTGGCAGTGC
TGCCGTGCCGCGCGGCTGCGAGGCGCTAACCTTGTACGGGCACAGTAATG
AAAAAACTGACCTGGTGTGCTCAACGTCCCTCACCTCGAAATATTCTTCA
CCGCCAGACCTGTGCGTACACTGTCTGCCGCCGCAACAATGCTTATCCAG
CCACATTCTCGCTGTTTTTACATCAGGCTCTGGCCCAGCAGCAGCGGCAG
CGGCGGCGTTGCCGTGGCGCGCGGCTGCGAGGCGCTCAACTCTTACGGGC
ACATTGAACAAGCTGATTCAATGTCACCGACCTTTCACACCAAGAGTCAG
GCACATACATACACTGTCTGCTGCCGCAACTATGCTGCTCAAAGCTACGT
GCTCATTGTTTCGGCACCAGGCTCTGGCCCAGCGGCGGTGGCAGCAGCGG
CGTCGCCGTGCCGCGCGGCTGCGAGGCGCTCAACTTGCACAGGCACACTA
ATGAAATAGCCGATTTGGTGTGCTCAATGTCCCTGACCTTGAAATATCTT
TAGTCCGCCAGTGACGTGCATACGCTGAGCCAGCTGCTTTTCCGCGGAAC
CTGCACCAGGCTCTGGCCCAGTGGCGGCGGCGGCGTGCCGCGCGGCTGCG
AGGCGCTCAGCTCGTACGAGGTAGCACGCTGATTTGGTGACTATGTCACC
AGTTCCTTGCCGCCAGACATTGGCACACACTGTCTGCCGCCGCAGCAGCA
CCGACCCAGCTATGCGTTCTCGCTGTTGTACCAGGCTTTGGCCCAGCGGC
GGCGGCAGTGCCAGCGTCGCCGTGCCGCGCGGCTGTGAGGCGCTCAACTC
GTACGGGCGCCGCAGCAACGCTCACCTGCTGCTGGAGTACGGCTTTGCGA
TGCTCGACAACGAGTGGGACGAGGTCGCCGTTCCGCTGAGC
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Coding sequence (CDS) from alignment at Contig_10:900237..906177-

>mRNA_4308 ID=mRNA_4308|Name=jgi.p|Trimin1|144826|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=795bp|location=Sequence derived from alignment at Contig_10:900237..906177- (Tribonema minus UTEX_B_3156 )
AGGTTCCTGCAGTGGCTGAGAGAAAATGGGGCGACGTGGGATAAGCTGGA
GTGGCCATCCTATGCCACAGCCAGCGGTTCGCGTGGCGCCATCGCCACCG
CAGACATCGCCCCCGGAGAGCCCTTCCTGTGCGTGCCGGAGCGCTGCATG
CTGACACCGCCGCAGGCGCAGCGGCTGCCGTGCGTGGGCCCCGTTTTTGC
GGCGGAGGCGGAGGGCCTGCTGCGCGGCGACGCCGCGCTGGCGCTGTACG
TCATGCACGAGTTGCTGCGCGGCGACGCGTCGTTCTACGCGCCGTACCTC
GCCGTGCTGCCTGCGCCGCACACCGCGGAGGACTGGGATGCGACTGCCGT
GGCAGTGCTCCAGGACGAGCGCCTCGCGGCGAGCGCTGATGCGCGGAGTC
GGCAGCTTACGCGCGCCTGGGAGCGCACCATGAGCGCACTCGCCGCCAGC
TACCCAGGCATGTTCCCGCGCGAAACATATACGCTGGCGCTGTGGCGGCG
CGCGTGGGGCGTCATTCGCGCGCGCGCCTTCGGGCGCCGCCTGCCGTGGA
GCGCGCTCGTGCCGCTCGCAGACTGCCTCAACCACGGCAACGTGCCCACC
AAGTACGACTTTGACGCTGGGGGCAACGGCGTTTTCAGGCTTTGGCCCAG
CGGCGGCGGCAGTGCCAGCGTCGCCGTGCCGCGCGGCTGTGAGGCGCTCA
ACTCGTACGGGCGCCGCAGCAACGCTCACCTGCTGCTGGAGTACGGCTTT
GCGATGCTCGACAACGAGTGGGACGAGGTCGCCGTTCCGCTGAGC
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