mRNA_16717 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176612
Unique NamemRNA_16717
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|176612 vs. uniprot
Match: A0A835ZCS3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCS3_9STRA)

HSP 1 Score: 355 bits (911), Expect = 3.930e-124
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1 
Query:    1 MVLAFIASFFGRGEGYRRLQELLDVVAHGVPVSVKRQADFEAEWTRGNYPLEPRHVPVFDCKVLEDIALGRCVVMHAAIARMYFSTRLHINPVFVVDEGAAKLRVVHDLSALLHGESVNNTTVFEEAPVVECGHIFEAMLYVWTCIYKGPREAGLPMQSKSLRQRSSLVCAVP 519
            MVLAFIASFFGRGEGYRRLQELLDVVAHGVPVSVKRQADFEAEWTRGNYPLEPRHVPVFDCKVLEDIALGRCVVMHAAIARMYFSTRLHINPVFVVDEGAAKLRVVHDLSALLHGESVNNTTVFEEAPVVECGHIFEAMLYVWTCIYKGPREAGLPMQSKSLRQRSSLVCAVP
Sbjct:    1 MVLAFIASFFGRGEGYRRLQELLDVVAHGVPVSVKRQADFEAEWTRGNYPLEPRHVPVFDCKVLEDIALGRCVVMHAAIARMYFSTRLHINPVFVVDEGAAKLRVVHDLSALLHGESVNNTTVFEEAPVVECGHIFEAMLYVWTCIYKGPREAGLPMQSKSLRQRSSLVCAVP 173
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BLAST of jgi.p|Trimin1|176612 vs. uniprot
Match: A0A835YZC0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC0_9STRA)

HSP 1 Score: 271 bits (694), Expect = 1.790e-90
Identity = 137/155 (88.39%), Postives = 141/155 (90.97%), Query Frame = 1 
Query:    1 MVLAFIASFFGRGEGYRRLQELLDVVAHGVPVSVKRQADFEAEWT--RGNYPLEPRHVPVFDCKVLEDIALGRCVVMHAAIARMYFSTRLHINPVFVVDEGAAKLRVVHDLSALLHGESVNNTTVFEEAPVVECGHIFEAMLY-VWTCIYKGPRE 456
            MVLA  ASFFG GEGY RLQELLDVVAHGVPVSVKRQADFEAEWT  RGNYPLEPRHVPVFDCKVLEDIALGRC+VMHAAIARMYFSTRLHINPVFVVDEGAAK RVVHDLSALLHGESVNNTTVFEEAPVV CGHIFEAMLY +W+     PR+
Sbjct:    1 MVLAVTASFFGCGEGYPRLQELLDVVAHGVPVSVKRQADFEAEWTVSRGNYPLEPRHVPVFDCKVLEDIALGRCIVMHAAIARMYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHGESVNNTTVFEEAPVVGCGHIFEAMLYRIWSLRQAWPRK 155
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BLAST of jgi.p|Trimin1|176612 vs. uniprot
Match: A0A836CCV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV7_9STRA)

HSP 1 Score: 251 bits (640), Expect = 5.840e-74
Identity = 133/174 (76.44%), Postives = 144/174 (82.76%), Query Frame = 1 
Query:    1 MVLAFIASFFGRGEGYRRLQELLDVVAHGVPVSVKRQADFEAEWTRGNYPLEPRHVPVFDCKVLEDIALGRCVVMHAAIARMYFSTRLHINPVFVVDEGAAKLRVVHDLSALLHGESV-NNTTVFEEAPVVECGHIFEAMLY-VWTCIYKGPREAGL--PMQSKSLRQRSSLVC 510
            MV A  ASFFGR EG  RL+ELLDVVAHGVPV  KRQADFEAEWTRG+YPLEPRHVPVFDCKVL  IALGRC+VMHAA+ RMYFSTRLHINPVFVVDEGAAK RVVHDLSALLHGESV NNTTVFE+APVVECGHIFEAMLY +W+     PR+  L   M  KS  ++ +L C
Sbjct:  322 MVHAVTASFFGRVEGCPRLEELLDVVAHGVPV--KRQADFEAEWTRGSYPLEPRHVPVFDCKVLNYIALGRCIVMHAAVVRMYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHGESVDNNTTVFEDAPVVECGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDC 493
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BLAST of jgi.p|Trimin1|176612 vs. uniprot
Match: A0A836CKZ7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ7_9STRA)

HSP 1 Score: 124 bits (310), Expect = 2.030e-33
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:  244 MYFSTRLHINPVFVVDEGAAKLRVVHDLSALLHGESVNNTTVFEEAPVVECGHIFEAMLY-VWTCIYKGPRE 456
            MYFSTRLHINPVFVVDEGAA  RVVHDLSALLHGESVNNTTVFEEAPVVECGHIFEAMLY +W+     PR+
Sbjct:    1 MYFSTRLHINPVFVVDEGAANFRVVHDLSALLHGESVNNTTVFEEAPVVECGHIFEAMLYRIWSLRQAWPRK 72
[Close]
BLAST of jgi.p|Trimin1|176612 vs. uniprot
Match: A0A835YWL4_9STRA (Orotate phosphoribosyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWL4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.430e-13
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:  415 MLYVWTCIYKGPREAGLPMQSKSLRQRSSLVCAVP 519
            ++YVWTCIYKGPREAGLPMQSKSLRQRSSLVCAVP
Sbjct:  184 LMYVWTCIYKGPREAGLPMQSKSLRQRSSLVCAVP 218
[Close]
BLAST of jgi.p|Trimin1|176612 vs. uniprot
Match: A0A835YTQ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTQ8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.900e-8
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    1 MVLAFIASFFGRGEGYRRLQELLDVVAHGVPV 96
            MVLA IASFFGRGEGY RLQELLDVVAHGVPV
Sbjct:   87 MVLAVIASFFGRGEGYPRLQELLDVVAHGVPV 118
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176612 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835ZCS3_9STRA3.930e-124100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZC0_9STRA1.790e-9088.39Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CCV7_9STRA5.840e-7476.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CKZ7_9STRA2.030e-3384.72Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YWL4_9STRA1.430e-1394.29Orotate phosphoribosyltransferase (Fragment) n=1 T... [more]
A0A835YTQ8_9STRA2.900e-893.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_139contigContig_139:37139..37660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176612|e_gw1.139.43.1
Hectar predicted targeting categoryother localisation
TranscriptId176934
TrackFilteredModels1
ProteinId176612
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176612gene_16717Tribonema minus UTEX_B_3156 geneContig_139 37139..37660 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16717_1exon_16717_1Tribonema minus UTEX_B_3156 exonContig_139 37139..37660 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16717CDS_16717Tribonema minus UTEX_B_3156 CDSContig_139 37139..37660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176612Trimin1|176612|e_gw1.139.43.1Tribonema minus UTEX_B_3156 polypeptideContig_139 37139..37660 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16717 ID=mRNA_16717|Name=jgi.p|Trimin1|176612|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=522bp|location=Sequence derived from alignment at Contig_139:37139..37660- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTTGCGTTTATAGCGTCTTTCTTTGGGCGCGGGGAGGGTTATAG
GCGGTTGCAGGAGCTGCTAGATGTGGTGGCGCACGGTGTGCCGGTGTCTG
TCAAACGGCAGGCAGATTTTGAGGCAGAATGGACACGTGGAAATTACCCC
CTTGAGCCACGGCATGTGCCGGTGTTTGATTGCAAAGTCTTGGAAGACAT
TGCTCTGGGTCGGTGCGTTGTCATGCATGCTGCCATTGCCCGCATGTACT
TCAGCACACGGTTGCACATCAACCCCGTATTTGTGGTCGACGAGGGTGCT
GCAAAGCTTCGCGTGGTGCATGACTTGTCTGCTTTGCTACATGGCGAGAG
TGTCAACAATACCACGGTGTTTGAGGAGGCTCCTGTCGTGGAGTGTGGGC
ATATATTTGAGGCGATGCTGTACGTATGGACTTGTATTTATAAAGGCCCA
AGGGAGGCCGGGTTGCCTATGCAATCGAAAAGCTTGCGTCAACGCAGCAG
CCTAGTCTGCGCTGTGCCCTAG
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protein sequence of jgi.p|Trimin1|176612

>Trimin1|176612|e_gw1.139.43.1 ID=Trimin1|176612|e_gw1.139.43.1|Name=jgi.p|Trimin1|176612|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=174bp
MVLAFIASFFGRGEGYRRLQELLDVVAHGVPVSVKRQADFEAEWTRGNYP
LEPRHVPVFDCKVLEDIALGRCVVMHAAIARMYFSTRLHINPVFVVDEGA
AKLRVVHDLSALLHGESVNNTTVFEEAPVVECGHIFEAMLYVWTCIYKGP
REAGLPMQSKSLRQRSSLVCAVP*
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mRNA from alignment at Contig_139:37139..37660-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16717 ID=mRNA_16717|Name=jgi.p|Trimin1|176612|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=522bp|location=Sequence derived from alignment at Contig_139:37139..37660- (Tribonema minus UTEX_B_3156 )
ATGGTGCTTGCGTTTATAGCGTCTTTCTTTGGGCGCGGGGAGGGTTATAG
GCGGTTGCAGGAGCTGCTAGATGTGGTGGCGCACGGTGTGCCGGTGTCTG
TCAAACGGCAGGCAGATTTTGAGGCAGAATGGACACGTGGAAATTACCCC
CTTGAGCCACGGCATGTGCCGGTGTTTGATTGCAAAGTCTTGGAAGACAT
TGCTCTGGGTCGGTGCGTTGTCATGCATGCTGCCATTGCCCGCATGTACT
TCAGCACACGGTTGCACATCAACCCCGTATTTGTGGTCGACGAGGGTGCT
GCAAAGCTTCGCGTGGTGCATGACTTGTCTGCTTTGCTACATGGCGAGAG
TGTCAACAATACCACGGTGTTTGAGGAGGCTCCTGTCGTGGAGTGTGGGC
ATATATTTGAGGCGATGCTGTACGTATGGACTTGTATTTATAAAGGCCCA
AGGGAGGCCGGGTTGCCTATGCAATCGAAAAGCTTGCGTCAACGCAGCAG
CCTAGTCTGCGCTGTGCCCTAG
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Coding sequence (CDS) from alignment at Contig_139:37139..37660-

>mRNA_16717 ID=mRNA_16717|Name=jgi.p|Trimin1|176612|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=522bp|location=Sequence derived from alignment at Contig_139:37139..37660- (Tribonema minus UTEX_B_3156 )
ATGGTGCTTGCGTTTATAGCGTCTTTCTTTGGGCGCGGGGAGGGTTATAG
GCGGTTGCAGGAGCTGCTAGATGTGGTGGCGCACGGTGTGCCGGTGTCTG
TCAAACGGCAGGCAGATTTTGAGGCAGAATGGACACGTGGAAATTACCCC
CTTGAGCCACGGCATGTGCCGGTGTTTGATTGCAAAGTCTTGGAAGACAT
TGCTCTGGGTCGGTGCGTTGTCATGCATGCTGCCATTGCCCGCATGTACT
TCAGCACACGGTTGCACATCAACCCCGTATTTGTGGTCGACGAGGGTGCT
GCAAAGCTTCGCGTGGTGCATGACTTGTCTGCTTTGCTACATGGCGAGAG
TGTCAACAATACCACGGTGTTTGAGGAGGCTCCTGTCGTGGAGTGTGGGC
ATATATTTGAGGCGATGCTGTACGTATGGACTTGTATTTATAAAGGCCCA
AGGGAGGCCGGGTTGCCTATGCAATCGAAAAGCTTGCGTCAACGCAGCAG
CCTAGTCTGCGCTGTGCCCTAG
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