mRNA_13797 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Match: A0A835ZB61_9STRA (Polcalcin Nic t 1-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB61_9STRA) HSP 1 Score: 149 bits (377), Expect = 6.210e-46 Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1
Query: 1 DLRIPFRRFDADGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGSGTINSGEFLWAFFNRRRLLRQL 216
DLRIPFRRFDADGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGSGTINSGEFLWAFFNRRRLLRQL
Sbjct: 1 DLRIPFRRFDADGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGSGTINSGEFLWAFFNRRRLLRQL 72
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Match: A0A7S1UJX2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJX2_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.020e-20 Identity = 43/71 (60.56%), Postives = 50/71 (70.42%), Query Frame = 1
Query: 1 DLRIPFRRFDADGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGSGTINSGEFLWAFFNRRRLLRQ 213
DLR F FD GD VLS+ EFG AL L LT ++ALF+HFDPNGSG +N GEFLWAFFNRR L++
Sbjct: 91 DLRSVFEAFDESGDNVLSVQEFGKALQILVPELTVPEMVALFRHFDPNGSGGVNYGEFLWAFFNRRSFLKR 161
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Match: A0A7S3UR20_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UR20_HETAK) HSP 1 Score: 75.1 bits (183), Expect = 1.210e-14 Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 1
Query: 1 DLRIPFRRFDA------DGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGSGTINSGEFLWAFFNRRRLLRQL 216
DLR F+ FD+ D +G LS+ +F +A+ +L L + AL +HFDPNGSG IN GEFL+AFFNRR LL ++
Sbjct: 63 DLRKCFKSFDSAEALDDDAEGTLSMDQFENAVKSLGVPLQEEEASALCRHFDPNGSGAINYGEFLYAFFNRRALLNEV 140
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Match: A0A7S2ADU6_9DINO (Calmodulin n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2ADU6_9DINO) HSP 1 Score: 51.2 bits (121), Expect = 7.610e-6 Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 1
Query: 4 LRIPFRRFDADGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGSGTINSGEFLWAFFN 192
+R FRRFDAD DGV++L+EF AL L+ + ++++ KHFD + G ++ EF A +
Sbjct: 46 VRDIFRRFDADRDGVMTLSEFEAALHKFGFMLSKEEVVSVMKHFDTSKDGQVSYNEFCDAMLD 108
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Match: A0A6J0UR06_9SAUR (calcium-binding protein 4-like n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0UR06_9SAUR) HSP 1 Score: 51.2 bits (121), Expect = 8.430e-6 Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 1 DLRIPFRRFDADGDGVLSLTEFGDALAAL-NAGLTAQHLLALFKHFDPNGSGTINSGEFL 177
+L+I FR FD DGDG++SL E A+ AL L AQ + + K D NG G+++ EF+
Sbjct: 196 ELKIAFREFDTDGDGMISLAELRQAVTALLGEQLNAQEVDEILKDVDLNGDGSVDFDEFV 255
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Match: A0A7S3M8P0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8P0_9STRA) HSP 1 Score: 48.1 bits (113), Expect = 2.300e-5 Identity = 23/53 (43.40%), Postives = 31/53 (58.49%), Query Frame = 1
Query: 16 FRRFDADGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGSGTINSGEF 174
F+++D DGDGV+SL E L LN T + L+ +FK D N G I+ EF
Sbjct: 43 FKKWDTDGDGVISLEELERVLIILNPSFTKKDLMMIFKQADANKDGKIDYHEF 95
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Match: A0A7X6E9N9_9PSED (EF-hand domain-containing protein n=3 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A7X6E9N9_9PSED) HSP 1 Score: 47.4 bits (111), Expect = 2.730e-5 Identity = 27/57 (47.37%), Postives = 32/57 (56.14%), Query Frame = 1
Query: 7 RIPFRRFDADGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGSGTINSGEFL 177
R F R+D +GDG LS TEF AL LT + L AL K +PN G I+ EFL
Sbjct: 23 RKDFERYDTNGDGTLSTTEFRKALEPY---LTPEDLKALMKEVNPNADGKISWTEFL 76
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Match: A0A7S4SPH1_9DINO (Calmodulin (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SPH1_9DINO) HSP 1 Score: 48.9 bits (115), Expect = 6.400e-5 Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 1
Query: 16 FRRFDADGDGVLSLTEFGDALAALNAGL-TAQHLLALFKHFDPNGSGTINSGEFL-WAF 186
FRRFD++GDGV+SL E L AL++ TA+ + LF+ D GT+++ EF+ W F
Sbjct: 286 FRRFDSNGDGVISLVEMQAVLKALDSDFWTAERVERLFERADAKRDGTLDTEEFINWLF 344
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Match: UPI000C6DDEA6 (calmodulin-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DDEA6) HSP 1 Score: 47.8 bits (112), Expect = 6.770e-5 Identity = 23/62 (37.10%), Postives = 32/62 (51.61%), Query Frame = 1
Query: 16 FRRFDADGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGSGTINSGEFLWAFFNRRR 201
F RFD DGDGVL++ EFG + L +T L + +P G G++N FL R +
Sbjct: 20 FSRFDNDGDGVLTIKEFGRLMRFLGQSMTESELQDAMEELNPGGEGSLNFPGFLTLMTKRTK 81 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13797 ID=mRNA_13797|Name=jgi.p|Trimin1|142044|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=216bp|location=Sequence derived from alignment at Contig_137:132644..132859+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GATCTGCGCATCCCGTTCCGCCGCTTCGACGCGGACGGCGACGGCGTGCTback to top protein sequence of jgi.p|Trimin1|142044 >Trimin1|142044|gw1.137.63.1 ID=Trimin1|142044|gw1.137.63.1|Name=jgi.p|Trimin1|142044|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=72bp DLRIPFRRFDADGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGSback to top mRNA from alignment at Contig_137:132644..132859+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13797 ID=mRNA_13797|Name=jgi.p|Trimin1|142044|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=216bp|location=Sequence derived from alignment at Contig_137:132644..132859+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_137:132644..132859+ >mRNA_13797 ID=mRNA_13797|Name=jgi.p|Trimin1|142044|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=216bp|location=Sequence derived from alignment at Contig_137:132644..132859+ (Tribonema minus UTEX_B_3156 )back to top |