mRNA_14427 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|17153
Unique NamemRNA_14427
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: A0A835ZJH5_9STRA (Mitochondrial ribosomal protein L27-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJH5_9STRA)

HSP 1 Score: 224 bits (570), Expect = 4.260e-73
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 3 
Query:  147 MPVLGDIARGALRMSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKSIYPRDILQKPNAIFGTENMGHPGPKPALRE 482
            MPVLGDIARGALRMSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKSIYPRDILQKPNAIFGTENMGHPGPKPALRE
Sbjct:    1 MPVLGDIARGALRMSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKSIYPRDILQKPNAIFGTENMGHPGPKPALRE 112
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BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: D8LTR3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR3_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.200e-26
Identity = 49/84 (58.33%), Postives = 67/84 (79.76%), Query Frame = 3 
Query:  147 MPVLGDIARGALRMSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKSIY 398
            MP++G+I  G LRMSKY+SK+A KR P+  K GNKNFYKG GA  EG +NS+ +FI+D +K LE++APDL  F+LKPYV+K+++
Sbjct:    1 MPLIGNIVTGGLRMSKYISKSARKRIPMTSKMGNKNFYKGKGATKEGTINSRGRFIVDPEKRLEIIAPDLDGFKLKPYVSKAVW 84
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BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: A0A7S0AF32_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AF32_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.120e-19
Identity = 48/92 (52.17%), Postives = 58/92 (63.04%), Query Frame = 3 
Query:  150 PVLGDIARGALRMSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKSI--YPRDILQK 419
            P  G +      MSK+LSK+A KR PL  K   K FYKG GA  EG      KF++DK   LELVAPDLT F+LKPYVA+ +  YP+D+L K
Sbjct:   66 PATGSVGGAVRCMSKFLSKSARKRLPLTTKRAKKGFYKGNGATKEGYFGKGGKFVVDKSLRLELVAPDLTGFKLKPYVAQQVPRYPKDMLPK 157
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BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: A0A7S2KAW4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KAW4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.990e-16
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 3 
Query:  186 MSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKSI 395
            MSKYL+KAATKR PL  K   K +YKG GA  EG++ SK KFI D  K L+LV PDL  F+LKPY+A ++
Sbjct:   65 MSKYLTKAATKRLPLTNKKVKKGYYKGNGATVEGRITSKGKFIADPMKKLQLVVPDLEGFKLKPYIASAV 134
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BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: A0A7S4A9E0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A9E0_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.150e-15
Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 3 
Query:  186 MSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKS 392
            +SKY+SK+A KR PL  K   K +YKG G+  EG+L SK KF+ D  K LEL+APDL  F LKPY+A++
Sbjct:   52 ISKYISKSARKRLPLTTKRAGKGYYKGNGSTKEGRLTSKGKFVSDPKKKLELMAPDLEGFNLKPYIART 120
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BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: A0A7S1ZPW3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZPW3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.390e-15
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 3 
Query:  186 MSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPD-LTNFQLKPYVAKSI 395
            MSK+LSK+ATKR PL  K   K +YKGTGAR EGK+ S  +FI+D  K + L+ P+ L  F+LKPY+A+++
Sbjct:   38 MSKFLSKSATKRLPLTSKRARKGYYKGTGARKEGKITSLGRFIVDPTKRMNLIVPENLETFKLKPYIARTV 108
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BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: A0A7S3PW76_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PW76_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 8.400e-15
Identity = 38/71 (53.52%), Postives = 49/71 (69.01%), Query Frame = 3 
Query:  186 MSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKA-KFILDKDKLLELVAPDLTNFQLKPYVAKSI 395
            MSKY+SKA  KR PL  KH  K +YKG G   EG    +A +F++ KDKLLEL+ PDLT F+LKPY+  ++
Sbjct:   41 MSKYMSKAGAKRLPLSTKHVRKGYYKGKGHNREGSFVGRAGRFVVQKDKLLELMVPDLTGFKLKPYIGNNV 111
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BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: A0A7S2RFS1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFS1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.290e-14
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  189 SKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKS 392
            SKY   A  KR PL  K   K +YKG G RSEG+  SK  F++DK++LLELV PDL  F+LKPYV+++
Sbjct:   33 SKYYGNALRKRLPLSPKRARKGYYKGNGCRSEGRHTSKGGFVVDKNRLLELVVPDLQGFKLKPYVSRA 100
[Close]
BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: A0A0L0FN63_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FN63_9EUKA)

HSP 1 Score: 70.5 bits (171), Expect = 6.830e-13
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 3 
Query:  204 KAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKSI 395
            + AT+R  LH K GNKNFYKG GA+S G+L +  K+I    K+   V PDL  F LKPYVAK++
Sbjct:   10 RGATRRVALHPKQGNKNFYKGYGAKSSGRLTTLGKYIKQAHKIPNFVVPDLAGFNLKPYVAKTV 73
[Close]
BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: A0A6U5CEV9_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U5CEV9_HEMAN)

HSP 1 Score: 68.6 bits (166), Expect = 5.670e-12
Identity = 43/92 (46.74%), Postives = 52/92 (56.52%), Query Frame = 3 
Query:  111 WVCGHQRQAASNMPVLGDIARGALRMSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVA 386
            W  G +R  AS M  L D  RG     +  S     R PL  K G +NFYKG GA S GKL SK  F+L + K+ +L+ PDLT+  LKPYVA
Sbjct:    2 WGFGSRRPVASAMSSLVDAMRGKFGNRQGQSMG---RFPLTGKRGPRNFYKGKGAPSMGKLTSKGAFVLQRWKIPQLIVPDLTDTDLKPYVA 90
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|17153 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZJH5_9STRA4.260e-73100.00Mitochondrial ribosomal protein L27-domain-contain... [more]
D8LTR3_ECTSI1.200e-2658.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0AF32_9STRA1.120e-1952.17Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2KAW4_9STRA3.990e-1658.57Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S4A9E0_9STRA2.150e-1555.07Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S1ZPW3_9STRA5.390e-1553.52Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S3PW76_9STRA8.400e-1553.52Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2RFS1_9STRA2.290e-1454.41Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0L0FN63_9EUKA6.830e-1353.13Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A6U5CEV9_HEMAN5.670e-1246.74Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_132contigContig_132:90618..92793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|17153|CE17152_106
BRITEbr01610,ko00000,ko03011
KEGG koko:K17422
DescriptionMitochondrial ribosomal protein L27
COG categoryS
Max annot lvl2836|Bacillariophyta
EggNOG OGs2CWIG@1|root,2RUN7@2759|Eukaryota,2XGUV@2836|Bacillariophyta
Evalue1.11e-18
Seed ortholog159749.K0SRM2
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L27/L41, mitochondrial
Ec32 orthologEc-28_003130.1
TranscriptId17475
TrackFilteredModels1
ProteinId17153
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|17153gene_14427Tribonema minus UTEX_B_3156 geneContig_132 90618..92793 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14427_1exon_14427_1Tribonema minus UTEX_B_3156 exonContig_132 90618..90985 +
exon_14427_2exon_14427_2Tribonema minus UTEX_B_3156 exonContig_132 92646..92793 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14427UTR5_14427Tribonema minus UTEX_B_3156 five_prime_UTRContig_132 90618..90763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14427CDS_14427Tribonema minus UTEX_B_3156 CDSContig_132 90764..90985 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14427UTR3_14427Tribonema minus UTEX_B_3156 three_prime_UTRContig_132 92763..92793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|17153Trimin1|17153|CE17152_106Tribonema minus UTEX_B_3156 polypeptideContig_132 90764..92762 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14427 ID=mRNA_14427|Name=jgi.p|Trimin1|17153|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=516bp|location=Sequence derived from alignment at Contig_132:90618..92793+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGGCAGAGCAGCTAGCGTAGTCAGCGACAGGCTCGGTATTTTCTCACGCG
GGACTGTTGTGTTTGAGTGGCTTTCTGCAGCACTCGAGCTGGGTGACAGG
CACAACACCTTGGGTCTGCGGACATCAGAGGCAGGCAGCTTCAAACATGC
CCGTGCTCGGCGACATCGCGAGGGGAGCGTTGCGCATGTCCAAGTACCTC
AGCAAGGCAGCAACTAAGCGGGCGCCGCTGCACAGGAAGCATGGCAACAA
AAACTTCTACAAAGGCACAGGAGCCAGATCGGAGGGAAAGCTTAACAGCA
AGGCCAAGTTCATCTTGGACAAGGATAAGCTGCTGGAGCTCGTTGCCCCG
GATCTGACAAACTTCCAGCTCAAGCCCTACGTAGCCAAGTCCATCTACCC
AAGAGACATTCTTCAAAAACCAAACGCCATCTTTGGTACAGAAAACATGG
GGCATCCAGGCCCAAAACCAGCGCTGCGGGAATGAAGCCTATACATATGA
TTACCCTACACAAGCA
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protein sequence of jgi.p|Trimin1|17153

>Trimin1|17153|CE17152_106 ID=Trimin1|17153|CE17152_106|Name=jgi.p|Trimin1|17153|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=113bp
MPVLGDIARGALRMSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLN
SKAKFILDKDKLLELVAPDLTNFQLKPYVAKSIYPRDILQKPNAIFGTEN
MGHPGPKPALRE*
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mRNA from alignment at Contig_132:90618..92793+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14427 ID=mRNA_14427|Name=jgi.p|Trimin1|17153|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2176bp|location=Sequence derived from alignment at Contig_132:90618..92793+ (Tribonema minus UTEX_B_3156 )
TGGCAGAGCAGCTAGCGTAGTCAGCGACAGGCTCGGTATTTTCTCACGCG
GGACTGTTGTGTTTGAGTGGCTTTCTGCAGCACTCGAGCTGGGTGACAGG
CACAACACCTTGGGTCTGCGGACATCAGAGGCAGGCAGCTTCAAACATGC
CCGTGCTCGGCGACATCGCGAGGGGAGCGTTGCGCATGTCCAAGTACCTC
AGCAAGGCAGCAACTAAGCGGGCGCCGCTGCACAGGAAGCATGGCAACAA
AAACTTCTACAAAGGCACAGGAGCCAGATCGGAGGGAAAGCTTAACAGCA
AGGCCAAGTTCATCTTGGACAAGGATAAGCTGCTGGAGCTCGTTGCCCCG
GATCTGACAAACTTCCAGGTAAGCGTCGGACGTGTGCTGTGGCAACCTCT
TTGTTTGCACGTGGTAGTTGCACACTGGGGGTCGTAGGCACTAACTTCAG
AGGGAAAAAATGTCTGGCTGATTTGTCGGCTGTCTGTGAAGGCTCACCAT
CAGGTTATTATTGTTGTTGAGCACGCAGTGCGCAAGCTGCATGAAATGAT
GGCCACCATGTAACAGCAATCGAGAGCGGTTTAGTACAAGAGCGGTATAA
CGGTTGAAACACGGAAACAGTTGATATGCGAGCGGTCTTCTTATTTTGTG
TCTACCTAACTATGGTGAACCCTTCCTCTCCTAAGCATTGTTGTCGTATC
AATAAGTAGGCTGCTGGACGTACTTTGTGCTTTTAACTTGAAAAGAAGGG
GGGGGGGGGGGTGGACATGCGTTGTGCGGTGCGGGTACCGCAGGTGCGTG
CATTCAAAGACAAGCACGAAGATCGAGTCCTCCGAACTTCACTCTTTGTT
GTGACTGCTGGCCTGGCTCTTACGGACTGCAGCGTTGCGGGGGTTTGAAA
TCACCGACTGCTCCAGGGTAACACATGAAGCGCCCGTGCGCAAAGGCACA
GCAGAGCCCTGAGCCCTATGCCCCCTAAAGCCCTATGCCCCCTCCAGGCG
CTGAGACCAAGATGGCTGTGAGAGCAGCTGTTGCTGCTCATTGCAGCTCG
CGATCAGCATTTTTGAGGCTTCAGTGTAGCCGCTTGCAGCAGCAGCGGGC
ATTACGCTAGCACTGCAATTTTGCGGCGCAGCAACTGAAGCGTGGAGAAG
GGGAGAGAGGGGGAGGTCACCGGCCTTTTGTGCGTCTCAATGTGGTCTGT
TTGTATGCTGCTGTGACAAGAACAGACATAAAACGCCCAGTGACTCAAAC
ATACCAAGAAGCATATGTTATCACATTGAGTTTGCTGGAACTGCGCAGTC
AGACTTCTGCATTGCTGTACAGTAGCGTTATTGTCGGCTGTCTGTCCTAC
AAGTGCTGTATGTTACTAGACTGGATGATCTTCTGACAGATTGGTGTGCT
GGTTCTTAATACGCCTAGGTAGTTGTAGACCGGTGCTCACTCAACACTTT
ATCAAGGCGCTTCTGTTTTATGTTGTCCTTTGAAAAGCGCATGCATCTAG
ATAATGCATGGCATTTATACCTGTAGAAGCAAACATGGTTGCTTTTGGTG
AGTCTGAAAGGACGGGAGTGATACTTACTTGGCCCAGGCATTCAACACTG
TGTGATTGCGGTGCTATTGCTTCGGCATCCATTAGGATCACAGTATCATG
GCGGTCGCACTTGTGCAGCAGCGCCTTCTTGTAAGCAGCTGACTTGTCCA
TACCGAACTCTAGAGCACAGTCAAGAAGAAGCTGACTCATCTAGAAGACG
ATGATACTAGCCGCCAACATCAGCCATACAATTACCTTTGAGCAAGACAG
AGTACTCTGCACTGCCGCCATGACACCGCTCTTGCCGTTGCGCGCGCACC
ACACCACAGCAAATGTTGAAGACTCACTTGTCGTGACGCTGGCAGTTACT
TTGTGCAGCCGTACCTCATGGAGTATACCATAAAGTATGCCATTTTTTCA
ATTGCCCCCACTTGCATCGTTGCAATATGGGTCTTGATGCACTTTTCTTT
TGCCTGCCTGTTGTACGCCTGCCAACAGCTCAAGCCCTACGTAGCCAAGT
CCATCTACCCAAGAGACATTCTTCAAAAACCAAACGCCATCTTTGGTACA
GAAAACATGGGGCATCCAGGCCCAAAACCAGCGCTGCGGGAATGAAGCCT
ATACATATGATTACCCTACACAAGCA
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Coding sequence (CDS) from alignment at Contig_132:90618..92793+

>mRNA_14427 ID=mRNA_14427|Name=jgi.p|Trimin1|17153|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=339bp|location=Sequence derived from alignment at Contig_132:90618..92793+ (Tribonema minus UTEX_B_3156 )
ATGCCCGTGCTCGGCGACATCGCGAGGGGAGCGTTGCGCATGTCCAAGTA
CCTCAGCAAGGCAGCAACTAAGCGGGCGCCGCTGCACAGGAAGCATGGCA
ACAAAAACTTCTACAAAGGCACAGGAGCCAGATCGGAGGGAAAGCTTAAC
AGCAAGGCCAAGTTCATCTTGGACAAGGATAAGCTGCTGGAGCTCGTTGC
CCCGGATCTGACAAACTTCCAGCTCAAGCCCTACGTAGCCAAGTCCATCT
ACCCAAGAGACATTCTTCAAAAACCAAACGCCATCTTTGGTACAGAAAAC
ATGGGGCATCCAGGCCCAAAACCAGCGCTGCGGGAATGA
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