mRNA_13631 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352777
Unique NamemRNA_13631
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352777 vs. uniprot
Match: A0A835ZD84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD84_9STRA)

HSP 1 Score: 225 bits (574), Expect = 2.650e-73
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 3 
Query:  135 MSAQCKFIFDYGEHRKVRRLLTPITYQDLRESAQAAHGIKEDSFFLSYLDKKVHVDLVDDLDLQEGLKTAADADNELAVYIWRTAEERQRAVAGGAQAGFGAGSGAGGTAAAGEMVVV 488
            MSAQCKFIFDYGEHRKVRRLLTPITYQDLRESAQAAHGIKEDSFFLSYLDKKVHVDLVDDLDLQEGLKTAADADNELAVYIWRTAEERQRAVAGGAQAGFGAGSGAGGTAAAGEMVVV
Sbjct:    1 MSAQCKFIFDYGEHRKVRRLLTPITYQDLRESAQAAHGIKEDSFFLSYLDKKVHVDLVDDLDLQEGLKTAADADNELAVYIWRTAEERQRAVAGGAQAGFGAGSGAGGTAAAGEMVVV 118
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352777 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZD84_9STRA2.650e-73100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_131contigContig_131:260567..262023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352777|estExt_Genemark1.C_Ctg_1310036
Hectar predicted targeting categoryother localisation
TranscriptId353099
TrackFilteredModels1
ProteinId352777
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352777gene_13631Tribonema minus UTEX_B_3156 geneContig_131 260567..262023 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352777Trimin1|352777|estExt_Genemark1.C_Ctg_1310036Tribonema minus UTEX_B_3156 polypeptideContig_131 261125..261941 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13631_1exon_13631_1Tribonema minus UTEX_B_3156 exonContig_131 260567..260592 +
exon_13631_2exon_13631_2Tribonema minus UTEX_B_3156 exonContig_131 260792..260892 +
exon_13631_3exon_13631_3Tribonema minus UTEX_B_3156 exonContig_131 261118..261404 +
exon_13631_4exon_13631_4Tribonema minus UTEX_B_3156 exonContig_131 261865..262023 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_13631UTR5_13631Tribonema minus UTEX_B_3156 five_prime_UTRContig_131 260567..260592 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13631CDS_13631Tribonema minus UTEX_B_3156 CDSContig_131 261125..261404 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13631UTR3_13631Tribonema minus UTEX_B_3156 three_prime_UTRContig_131 261942..262023 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13631 ID=mRNA_13631|Name=jgi.p|Trimin1|352777|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=573bp|location=Sequence derived from alignment at Contig_131:260567..262023+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGATTTGGATCAGCACAGGAGCAGGTTGGCATGTGCCCTTGAAGTGCA
GTGTTTGTTTACAGCCTTGGGCAAGAGCTGGCGAGGTCGGCGCCGGCAAC
AGATGAGGTGCCTGCAGAAAGTTGCAGGTCAGCTATGTCAGCCCAGTGCA
AATTTATATTTGACTATGGCGAACATCGGAAGGTCAGGAGACTGCTCACG
CCCATTACCTATCAAGATCTAAGAGAGAGCGCACAAGCAGCACACGGCAT
CAAGGAAGACTCATTCTTCCTGTCCTACCTGGACAAGAAGGTGCACGTCG
ATCTCGTGGACGACTTGGACCTACAAGAAGGCCTCAAGACTGCTGCAGAT
GCTGACAACGAGCTGGCTGTGTACATTTGGCGAACTGCCGAGGAGCGCCA
GCGCGCTGTGGCAGGTGGTGCGCAAGCTGGGTTTGGCGCTGGCAGTGGTG
CTGGCGGTACTGCGGCTGCAGGTGAAATGGTTGTTGTTTGAAATGTATGT
GATTTTGGGTTTCCCTGCTGAAGTCCCATATGGCGCAGTGGTCGTCTCCT
GTACCCTGGAGGTCTTGTTGGGT
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protein sequence of jgi.p|Trimin1|352777

>Trimin1|352777|estExt_Genemark1.C_Ctg_1310036 ID=Trimin1|352777|estExt_Genemark1.C_Ctg_1310036|Name=jgi.p|Trimin1|352777|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=119bp
MSAQCKFIFDYGEHRKVRRLLTPITYQDLRESAQAAHGIKEDSFFLSYLD
KKVHVDLVDDLDLQEGLKTAADADNELAVYIWRTAEERQRAVAGGAQAGF
GAGSGAGGTAAAGEMVVV*
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mRNA from alignment at Contig_131:260567..262023+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13631 ID=mRNA_13631|Name=jgi.p|Trimin1|352777|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1457bp|location=Sequence derived from alignment at Contig_131:260567..262023+ (Tribonema minus UTEX_B_3156 )
CAGGATTTGGATCAGCACAGGAGCAGGTAATGTATTCGCATAGCTGATGC
TGCTCTATTCACGGTGCTCGCCTGCTGCATCCTTCTAGCAATGCAGCAAG
TAACCATGCCGATGTGGCGTGTGATGTGTTGCGAGTGGCGTGAGAGGGAA
GGCGCTGCTGTCAGTCACCAGCAGAAGCGAAGTGTCCAAAGGACTGCCCA
TGTTGTACGCCTGCACTCTTGCCAGGTTGGCATGTGCCCTTGAAGTGCAG
TGTTTGTTTACAGCCTTGGGCAAGAGCTGGCGAGGTCGGCGCCGGCAACA
GATGAGGTGCCTGCAGAAAGTTGCAGGTAGGTTTCCTGTCAGCCACGACT
GCTGCCTGTTAGCATGTTGCTCTTCCAGAACACTTATACTGGTCCTGCAC
GTGTCTTGCTTTTCTGACTGTTGTTACCTCCACCCTTCCCAGTTCTGGCT
TCCCCAGCGCCGCCTTCACACACTCATCGCTCACCTCGGCTGTGTCCTTG
TGCATCGTACCTTATGTAGTGCACTTCTCCTTCGGGTGGCGTGACTGCCA
GGTCAGCTATGTCAGCCCAGTGCAAATTTATATTTGACTATGGCGAACAT
CGGAAGGTCAGGAGACTGCTCACGCCCATTACCTATCAAGATCTAAGAGA
GAGCGCACAAGCAGCACACGGCATCAAGGAAGACTCATTCTTCCTGTCCT
ACCTGGACAAGAAGGTGCACGTCGATCTCGTGGACGACTTGGACCTACAA
GAAGGCCTCAAGACTGCTGCAGATGCTGACAACGAGCTGGCTGTGTACAT
TTGGCGAACTGCCGAGGAGCGCCAGCGCGCTGTGGCAGGTATGTCACGGG
TTCATGCCGATGCGCGATGGGTCATTGCTGTGCACTAGATCTTACCGCGC
ATAAGCTACCGCGGGTCACTGGCTTGACTTGTGCATGCTGCCACGTTGTC
AACTTCCAGGTCCTTACCTCATGTGCATCTGATTACCACAATGTTTCAGC
TTTTCGCTGCTGGTACATGAGTATGCCGGATGCTTGCGAGCTTCATGTGT
TGCATAGCACCACGTGGCTGCTGGTACGTTTGGGCCTGCCCTGCGGGCTT
GTTCTGTCCACGACAGCTCTCCTCTGCAAGTGCCTCTGAGCTTTAGCTCC
TTGTGAACATGTACAGCTGCAAAGCAGAGTAATTGAGGTTTCTTGTGTTG
TTTGCCGGCTCATGTTGCACATACGCACAATGCGCGTTGACAGCGAACCG
CTTGCTCTGCGTGCTCCTTTTGCGTCTTGTGTCTGCCTTTTCCCTTAGGT
GGTGCGCAAGCTGGGTTTGGCGCTGGCAGTGGTGCTGGCGGTACTGCGGC
TGCAGGTGAAATGGTTGTTGTTTGAAATGTATGTGATTTTGGGTTTCCCT
GCTGAAGTCCCATATGGCGCAGTGGTCGTCTCCTGTACCCTGGAGGTCTT
GTTGGGT
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Coding sequence (CDS) from alignment at Contig_131:260567..262023+

>mRNA_13631 ID=mRNA_13631|Name=jgi.p|Trimin1|352777|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=357bp|location=Sequence derived from alignment at Contig_131:260567..262023+ (Tribonema minus UTEX_B_3156 )
ATGTCAGCCCAGTGCAAATTTATATTTGACTATGGCGAACATCGGAAGGT
CAGGAGACTGCTCACGCCCATTACCTATCAAGATCTAAGAGAGAGCGCAC
AAGCAGCACACGGCATCAAGGAAGACTCATTCTTCCTGTCCTACCTGGAC
AAGAAGGTGCACGTCGATCTCGTGGACGACTTGGACCTACAAGAAGGCCT
CAAGACTGCTGCAGATGCTGACAACGAGCTGGCTGTGTACATTTGGCGAA
CTGCCGAGGAGCGCCAGCGCGCTGTGGCAGGTGGTGCGCAAGCTGGGTTT
GGCGCTGGCAGTGGTGCTGGCGGTACTGCGGCTGCAGGTGAAATGGTTGT
TGTTTGA
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