mRNA_5788 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|152738 vs. uniprot
Match: A0A835Z9P9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9P9_9STRA) HSP 1 Score: 285 bits (728), Expect = 1.740e-97 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1
Query: 1 KGWGLRVLEDVKADQLLVEYVGEVIGPIERAKRMQEVRQHPRRIDAASLYVMQLAQNLFLDAKRKGGVARFINHSCEPTCRLDRWRAGGRVRCAVFAKRDLAAGTELSFDYQWGHHKARQKTKCLCGAPACRGFI 405
KGWGLRVLEDVKADQLLVEYVGEVIGPIERAKRMQEVRQHPRRIDAASLYVMQLAQNLFLDAKRKGGVARFINHSCEPTCRLDRWRAGGRVRCAVFAKRDLAAGTELSFDYQWGHHKARQKTKCLCGAPACRGFI
Sbjct: 1 KGWGLRVLEDVKADQLLVEYVGEVIGPIERAKRMQEVRQHPRRIDAASLYVMQLAQNLFLDAKRKGGVARFINHSCEPTCRLDRWRAGGRVRCAVFAKRDLAAGTELSFDYQWGHHKARQKTKCLCGAPACRGFI 135
BLAST of jgi.p|Trimin1|152738 vs. uniprot
Match: D8LK48_ECTSI (Possible Cdc2-related protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK48_ECTSI) HSP 1 Score: 158 bits (400), Expect = 2.590e-42 Identity = 78/138 (56.52%), Postives = 95/138 (68.84%), Query Frame = 1
Query: 1 KGWGLRVLEDVKADQLLVEYVGEVIGPIERAKRMQEVRQHPRRIDAAS---LYVMQLAQNLFLDAKRKGGVARFINHSCEPTCRLDRWRAGGRVRCAVFAKRDLAAGTELSFDYQWGHHKARQKTKCLCGAPACRGFI 405
KG GL+V+E V Q + EYVGE+I E KRM I +A LY+MQL + +LDAKRKGG+ARF+NHSCEPTCRL++W A G+ RCAVF+ R + AG ELSFDYQW H R+ TKCLCG+P CRG I
Sbjct: 283 KGMGLKVVEPVSKGQFIAEYVGEIITRKELNKRM---------ISSAGTRKLYMMQLGDDTYLDAKRKGGIARFVNHSCEPTCRLEQWTAMGQPRCAVFSLRAMKAGEELSFDYQWEAHHLRENTKCLCGSPQCRGTI 411
BLAST of jgi.p|Trimin1|152738 vs. uniprot
Match: A0A8J9S3C8_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S3C8_PHATR) HSP 1 Score: 136 bits (343), Expect = 1.860e-38 Identity = 64/135 (47.41%), Postives = 86/135 (63.70%), Query Frame = 1
Query: 1 KGWGLRVLEDVKADQLLVEYVGEVIGPIERAKRMQEVRQHPRRIDAASLYVMQLAQNLFLDAKRKGGVARFINHSCEPTCRLDRWRAGGRVRCAVFAKRDLAAGTELSFDYQWGHHKARQKTKCLCGAPACRGFI 405
KG GL V EDV +++EYVG + + AK + QH RR LY+M L +++DA+ KGG+AR+INHSCEP C++ RW+ G +R V R L+AGTEL+FDYQW + R TKC CG P+CRG +
Sbjct: 32 KGRGLVVEEDVDVGDMILEYVGRAVPQKQLAKYFRRY-QHDRR-----LYIMSLGDGIYIDARSKGGLARYINHSCEPNCQVQRWKVKGVLRAVVVPTRSLSAGTELTFDYQWERQRGRAATKCYCGTPSCRGTL 160
BLAST of jgi.p|Trimin1|152738 vs. uniprot
Match: A0A1E7EZW6_9STRA (SET-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EZW6_9STRA) HSP 1 Score: 128 bits (322), Expect = 3.260e-35 Identity = 61/132 (46.21%), Postives = 81/132 (61.36%), Query Frame = 1
Query: 1 KGWGLRVLEDVKADQLLVEYVGEVIGPIERAKRMQEVRQHPRRIDAASLYVMQLAQNLFLDAKRKGGVARFINHSCEPTCRLDRWRAGGRVRCAVFAKRDLAAGTELSFDYQWGHHKARQKTKCLCGAPACR 396
KG GLRVLEDV L+ EYVG+ + + + + R + LY+M L ++LDA+ GGVAR++NHSC+P C ++RW+ G R AV AK+D+ AGTELSFDYQW + R TKC C CR
Sbjct: 39 KGKGLRVLEDVAKGDLITEYVGKAVNKLFLGRLFR------RYANERMLYIMALTNEIYLDARDVGGVARYVNHSCDPNCVVERWKVRGLHRAAVVAKKDIPAGTELSFDYQWERRRGRAPTKCHCNEKLCR 164
BLAST of jgi.p|Trimin1|152738 vs. uniprot
Match: A0A448Z3M2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z3M2_9STRA) HSP 1 Score: 136 bits (343), Expect = 1.230e-34 Identity = 63/132 (47.73%), Postives = 87/132 (65.91%), Query Frame = 1
Query: 1 KGWGLRVLEDVKADQLLVEYVGEVIGPIERAKRMQEVRQHPRRIDAASLYVMQLAQNLFLDAKRKGGVARFINHSCEPTCRLDRWRAGGRVRCAVFAKRDLAAGTELSFDYQWGHHKARQKTKCLCGAPACR 396
KG GLRVLEDVK +L+ EYVG+ + + + R LY+M + +++LDA++ GGVAR+INHSC+P C+++RW+ G +R AV A++D+ AGTELSFDYQW + R TKC CGA CR
Sbjct: 156 KGKGLRVLEDVKQGELVTEYVGKAVNKLYLNHLFR------RYATERKLYIMAITNDIYLDARKVGGVARYINHSCDPNCQVERWKVRGIMRAAVVARKDIPAGTELSFDYQWERKRGRAPTKCYCGAKNCR 281
BLAST of jgi.p|Trimin1|152738 vs. uniprot
Match: M4BXT8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BXT8_HYAAE) HSP 1 Score: 136 bits (342), Expect = 1.610e-34 Identity = 66/135 (48.89%), Postives = 92/135 (68.15%), Query Frame = 1
Query: 1 KGWGLRVLEDVKADQLLVEYVGEVIGPIERAKRMQEVRQHPRRIDAASLYVMQLAQNLFLDAKRKGGVARFINHSCEPTCRLDRWRAGGRVRCAVFAKRDLAAGTELSFDYQWGHHKARQKTKCLCGAPACRGFI 405
KGWGLRVLE VKA QL++EYVGEVI E+ +R+ + +H + ++Y+M+L + ++DA+ KG V+RFINHSC+P C L +WR G R A+ A +D+ GTELS+DYQ+ H K + KC C A CRG +
Sbjct: 620 KGWGLRVLEQVKAGQLVIEYVGEVINEEEKERRLLDHAKHSP--EDKNMYIMELGKGEYIDARFKGSVSRFINHSCDPNCHLLKWRVKGVNRIAITALKDIEPGTELSYDYQF-HTKQAMEWKCHCEANCCRGTM 751
BLAST of jgi.p|Trimin1|152738 vs. uniprot
Match: A0A7S2YLB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YLB4_9STRA) HSP 1 Score: 130 bits (326), Expect = 1.720e-34 Identity = 63/135 (46.67%), Postives = 85/135 (62.96%), Query Frame = 1
Query: 1 KGWGLRVLEDVKADQLLVEYVGEVIGPIERAKRMQEVRQHPRRIDAASLYVMQLAQNLFLDAKRKGGVARFINHSCEPTCRLDRWRAGGRVRCAVFAKRDLAAGTELSFDYQWGHHKARQKTKCLCGAPACRGFI 405
KG+GLRVL+D ++ EY G+ + E ++ QH RR LY+M L +LDAK+ GG+AR+INHSC+P C++++WR G R AV A +D+ AGTEL+FDYQW R TKC CGA CRG +
Sbjct: 28 KGFGLRVLDDCVKGDIIQEYTGQAVRA-EALTKLFRRYQHERR-----LYIMALDTETYLDAKKAGGLARYINHSCDPNCKVEKWRVKGVYRAAVEALQDIPAGTELTFDYQWTRKAGRAPTKCYCGAVNCRGTL 156
BLAST of jgi.p|Trimin1|152738 vs. uniprot
Match: A0A3F2S2D5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S2D5_9STRA) HSP 1 Score: 135 bits (340), Expect = 2.600e-34 Identity = 67/136 (49.26%), Postives = 94/136 (69.12%), Query Frame = 1
Query: 1 KGWGLRVLEDVKADQLLVEYVGEVIGPIERAKRMQE-VRQHPRRIDAASLYVMQLAQNLFLDAKRKGGVARFINHSCEPTCRLDRWRAGGRVRCAVFAKRDLAAGTELSFDYQWGHHKARQKTKCLCGAPACRGFI 405
KGWGLRVLE VKA QL++EYVGEVI E+ +R+ E ++ P + ++Y+M+L + ++DA+ KG V+RFINHSC+P C L +WR G R A+ A +D+ +GTELS+DYQ+ H K + KC C A CRG +
Sbjct: 440 KGWGLRVLESVKAGQLVIEYVGEVINEDEKERRLLEHAKKSP---EDKNMYIMELGKGEYIDARFKGSVSRFINHSCDPNCHLLKWRVKGVNRIAITALKDIESGTELSYDYQF-HTKQAMEWKCHCKAKNCRGTM 571
BLAST of jgi.p|Trimin1|152738 vs. uniprot
Match: A0A7S2Z6S1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2Z6S1_9CHLO) HSP 1 Score: 125 bits (313), Expect = 8.400e-34 Identity = 62/135 (45.93%), Postives = 82/135 (60.74%), Query Frame = 1
Query: 1 KGWGLRVLEDVKADQLLVEYVGEVIGPIERAKRMQEVRQHPRRIDAASLYVMQLAQNLFLDAKRKGGVARFINHSCEPTCRLDRWRAGGRVRCAVFAKRDLAAGTELSFDYQWGHHKARQKTKCLCGAPACRGFI 405
KG+GL +D+K ++EYVGEVIG E A+R E + RR Y M +A +DA RKG ++RF+NHSC P C +W+ GG + +FA RD+AAG+EL+FDY + R KCLCG P CRG I
Sbjct: 9 KGYGLMTQQDLKQGDFVMEYVGEVIGEEEYAERKLEYQSSGRR----HFYFMSIANGEVIDATRKGNLSRFLNHSCAPNCETQKWQVGGELCIGLFALRDIAAGSELTFDYHFERDGDRAM-KCLCGEPCCRGVI 138
BLAST of jgi.p|Trimin1|152738 vs. uniprot
Match: A0A662YAQ6_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YAQ6_9STRA) HSP 1 Score: 134 bits (336), Expect = 1.030e-33 Identity = 63/136 (46.32%), Postives = 95/136 (69.85%), Query Frame = 1
Query: 1 KGWGLRVLEDVKADQLLVEYVGEVIGPIERAKRMQEVRQHPRRI-DAASLYVMQLAQNLFLDAKRKGGVARFINHSCEPTCRLDRWRAGGRVRCAVFAKRDLAAGTELSFDYQWGHHKARQKTKCLCGAPACRGFI 405
KGWGLR++++VKA QL++EYVGEVI ++ +R+QE H ++ + ++Y+M+L + ++DA+ KG V+RFINHSC+P C L +WR G R A+ A +D+ GTELS+DYQ+ H K + KC C + CRG +
Sbjct: 629 KGWGLRIMDNVKAGQLVIEYVGEVINEEDKERRLQE---HAKKTPEDKNMYIMELGKGEYIDARFKGSVSRFINHSCDPNCHLLKWRVKGVNRIAITALKDIETGTELSYDYQF-HTKQAMEWKCHCQSKNCRGTM 760 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152738 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5788 ID=mRNA_5788|Name=jgi.p|Trimin1|152738|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=405bp|location=Sequence derived from alignment at Contig_13:419586..421897- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AAGGGCTGGGGGCTGCGCGTTCTGGAGGACGTCAAGGCGGATCAGCTGCTback to top protein sequence of jgi.p|Trimin1|152738 >Trimin1|152738|gw1.13.232.1 ID=Trimin1|152738|gw1.13.232.1|Name=jgi.p|Trimin1|152738|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=135bp KGWGLRVLEDVKADQLLVEYVGEVIGPIERAKRMQEVRQHPRRIDAASLYback to top mRNA from alignment at Contig_13:419586..421897- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5788 ID=mRNA_5788|Name=jgi.p|Trimin1|152738|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2312bp|location=Sequence derived from alignment at Contig_13:419586..421897- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_13:419586..421897- >mRNA_5788 ID=mRNA_5788|Name=jgi.p|Trimin1|152738|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=405bp|location=Sequence derived from alignment at Contig_13:419586..421897- (Tribonema minus UTEX_B_3156 )back to top |