mRNA_5858 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|138480
Unique NamemRNA_5858
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A835ZE02_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE02_9STRA)

HSP 1 Score: 582 bits (1499), Expect = 1.960e-210
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 1
Query:    1 PLQPNDDPELKLEQLWTFEYNDKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWDLGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGDDNGGYKWWDQCPCLDCEGTGQNENGLLCEHPYYIDRINIDVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFTIIDTGLPEDGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 822
            PLQPNDDPELKLEQLWTFEYNDKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWDLGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGDDNGGYKWWDQCPCLDCEGTGQNENGLLCEHPYYIDRINIDVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFTIIDTGLPEDGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR
Sbjct:    1 PLQPNDDPELKLEQLWTFEYNDKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWDLGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGDDNGGYKWWDQCPCLDCEGTGQNENGLLCEHPYYIDRINIDVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFTIIDTGLPEDGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 274          
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A835YZK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZK9_9STRA)

HSP 1 Score: 299 bits (765), Expect = 3.710e-94
Identity = 139/280 (49.64%), Postives = 198/280 (70.71%), Query Frame = 1
Query:   16 DDPELKLEQLWTFEYNDKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSAD--------VHSNADHGVQSLEFHPDWDLGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGDD---NGGYKWWDQCPCLDCEGTGQNENGLLCEHPYYIDRINIDVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFTIIDTGLPEDGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 822
            DD  + +E LWT++ +D PTM++FVPGS+ V+   K G LR Y+SID+  + +T+++DM+A+        V+S  DHG+ S EFHPDWD GV   F+LY+GEPK ++ LPN AAI + RP  +G     + G  W D+CPCLDC+GTG N +GL+CE PYY+DR +ID+  G AT+D+TLL A+CG+S++HGP  L  +G D+++G GD SQ   +D GL  D CFDP++  GQGS R +R+ F  GKI R+P++L+DS +EL  +QV ++AKG+RQP+R
Sbjct:   39 DDDNVLVELLWTWDEDDLPTMIKFVPGSEQVLVAHKLGTLRLYDSIDSGVNAYTLLVDMTAELXXXXXXEVNSIHDHGLTSFEFHPDWDAGVRKVFLLYSGEPKDIRKLPNYAAILADRPPDYGTGPPGDHGQTWGDECPCLDCDGTGANLDGLVCEKPYYLDRFSIDLDAGTATRDVTLLTASCGSSTTHGPTDLKVIGKDLIYGAGDSSQVATLDYGLDVDACFDPNQSAGQGSYRCVRETFGAGKIGRIPHDLLDSDKELAFEQVELVAKGLRQPWR 318          
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A835YXY7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXY7_9STRA)

HSP 1 Score: 286 bits (732), Expect = 7.010e-87
Identity = 142/352 (40.34%), Postives = 195/352 (55.40%), Query Frame = 1
Query:    4 LQPNDDPELKLEQLWTFEYNDKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWDLGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGDD---NGGYKWWDQCPCLDCEGTGQNENGLLCEHPYYIDRINIDVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFTIIDTGLPEDGCFDPDKGK----------------------------------------------------------------------------GQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 822
            L P DD  L +E +WT++Y+D+  M++FVPGSD VI+V K G +R Y+++ +D   +  ++DM+AD +   DHG+ ++E+HPDWD GV   FVLYTGEPK V+ LPN  A++  RP  WG       G  W D CPCLDC+G G+N +GL+CEHPYYIDRI++D+  G + KD+TLL   CG+S +HGPG L  +G D+++  G+GSQFT+ D G  +DGC++ D                                                                               GQGS RAIR+ F NGKI R+PY+L+DS  E+  DQV ++AKGVRQP R
Sbjct:   14 LAPVDDDNLLVEHIWTWQYDDRAVMIKFVPGSDQVISVHKAGNVRLYDNLQSDPYYYKHLVDMTADTYDLGDHGLLAMEYHPDWDAGVRKIFVLYTGEPKDVRQLPNNDAVEDDRPTSWGKGPPGKHGQLWPDSCPCLDCDGAGKNRDGLICEHPYYIDRISVDLDAGTSKKDVTLLSVMCGSSDTHGPGDLKIIGKDLIYSTGEGSQFTVFDYGFEDDGCYNSDSDSPLFPHPPXXXXXXXXXXXXXXXXXXXXXXXXIPLSTPAXXXXXXXXXXXXWLRPRSXXXXXXXXXXXXXXXXDQTAGQGSFRAIRETFGNGKIGRIPYDLLDSDSEISLDQVELVAKGVRQPVR 365          
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A835YVH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH6_9STRA)

HSP 1 Score: 290 bits (742), Expect = 3.150e-86
Identity = 141/277 (50.90%), Postives = 182/277 (65.70%), Query Frame = 1
Query:   10 PNDDPELKLEQLWTFEYNDKPTMLRFVPGSDA-VITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWDLGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWG---DDNGGYKWWDQCPCLDCEGTGQNENGLLCEHPYYIDRINIDVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFTIIDTGLPEDGCFDPDKGKGQGSLRAIRDD--FNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 822
            P+ + +L +E LW F  +D P  L FVPG+D  V+T  KTG +R Y ++DAD + +  ++DM ADV S  DHG+ S  FHPD++ GV  AF+ YTGEPK V  LPN+AAI   RP GWG    +  GY W D CPCLDC+GTG N  G +CEHPYYIDR+ +D+  G  TK++TLL   CG++SSHGPG L+ +  D++   GDGSQF   D G PEDGC+ PD G  QG  RA R D  + NGKI R+P  L+DS   +  +QV  I++G RQPFR
Sbjct:   33 PSQNEDLVIEHLWQFSMDDPPVKLAFVPGTDGMVVTAHKTGFMRLYQNVDADVNDYKTLIDMRADVFSFGDHGLLSFAFHPDFEKGVKKAFLHYTGEPKDVSVLPNDAAITPNRPQGWGLGPPETTGYTWGDICPCLDCDGTGPNHYGNICEHPYYIDRVAVDLDAGTFTKEVTLLNDVCGSASSHGPGTLIFINGDLVASNGDGSQFAEFDPGFPEDGCYVPDAGADQGCFRAQRMDLPYANGKIMRVPAALLDSAATITLEQVEFISRGNRQPFR 309          
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA)

HSP 1 Score: 259 bits (662), Expect = 1.410e-75
Identity = 124/242 (51.24%), Postives = 161/242 (66.53%), Query Frame = 1
Query:  106 VITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWDLGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWG---DDNGGYKWWDQCPCLDCEGTGQNENGLLCEHPYYIDRINIDVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFTIIDTGLPEDGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 822
            V+T  K+G++R ++SI AD    TVMLDM+ DV    DHG+ S  FHP +  GV  AF+LYTGEPK V  LPN A I   RPDGWG       G+ W DQC CLDC+G G N  G +CEHPYY+DR+ +D++ G  TK++TLLQ ACG+SSSHGPG +L +G D+L  VGDGSQ+  +D G   DGC+ P  G  QG  RA R+DF NGK+ R+P  L+++P  +  +    +A G+RQPFR
Sbjct:    2 VVTSHKSGMVRLHSSITADFADSTVMLDMTEDVADYNDHGLLSFHFHPQFANGVQKAFLLYTGEPKDVNVLPNNAEITPNRPDGWGAGPPGKMGFTWNDQCRCLDCDGIGPNHYGNICEHPYYLDRVAVDLEAGTMTKEVTLLQVACGSSSSHGPGTVLSIGGDLLVSVGDGSQYAELDPGFDVDGCYVPGAGDDQGVFRAQREDFGNGKVHRIPAALLNAPAAIALEATSPVAIGLRQPFR 243          
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A835YGZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGZ7_9STRA)

HSP 1 Score: 224 bits (570), Expect = 3.470e-68
Identity = 127/299 (42.47%), Postives = 170/299 (56.86%), Query Frame = 1
Query:    1 PLQPNDDPELKLEQLWTFEYNDKP---TMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDW--DLGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGDDNG----GYKWWDQCPCLDCEGTG-QNENGLLCEHPYYIDRINI--DVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFT------------IIDTGLPE-DGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 822
            P+ P+    L +E +W F+ ++       +++VPG+D V+TV K G++R Y SIDA  D F  ++D+   V S++DHG+ SL FHP++    G  TAF++Y+G PK V  LPN AAI   RP  WG   G    GY+W +      C   G  N NG +CE  YY+DR+N+  D      T DITL    CG+SS+HGPG LL +  D  F +GDGSQF             IID G P+ D C+ P  G  QG  RA R DF NGK+ R+P  L+DSP  L  D + ++ KG RQPFR
Sbjct:   35 PVIPSHMDGLVVEHVWQFDPDNLAECVVQIQWVPGTDQVVTVHKHGIVRLYPSIDASVDDFVQLIDLRIAVDSDSDHGLLSLNFHPNFAGPNGTKTAFLMYSGNPKDVTLLPNNAAISPKRPADWGSQTGDLPGGYEWPEDL----CTNLGPDNYNGEICEKVYYMDRVNVNLDAATPVMTPDITLYAGVCGSSSTHGPGSLLEINGDFYFSMGDGSQFAAMGSQFIPAPLNIIDPGFPDVDACYVPGAGLDQGQFRAQRLDFPNGKVMRIPGKLLDSPTPLTFDDMEIVTKGNRQPFR 329          
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A835ZCH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH6_9STRA)

HSP 1 Score: 221 bits (563), Expect = 1.540e-67
Identity = 117/286 (40.91%), Postives = 166/286 (58.04%), Query Frame = 1
Query:    1 PLQPNDDPELKLEQLWTFEYN----DKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWDL----GVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWG---DDNGGYKWWDQCPCLDCEGTGQNENGLLCEHPYYIDRINIDVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFTIIDTGLPE-DGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 822
            P+ P+ DP+L +E +W F       D+PT ++++PG++ V+T  KTG +R Y+SIDA  + F    +   DV S  DHG+ S +FHPD+++    G    F+LY+G PK V  LPN   + ++RP  WG    D  GY W D  PC D      N +GL+CE  YY+DR   D     A KD+ L++  CG SS+HG G L+ VG D++F VGDG+QF + D G P  + C+ P  GK QG   A RDD  NGK+ ++PY  +D+   L    +  I++G RQP R
Sbjct:   35 PIVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDG-PCPDL--GKDNMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFVVFDPGFPTLNACYVPGNGKDQGVFNAQRDDMLNGKVIKVPYAALDAAAPLTPADISFISRGSRQPLR 317          
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A835Z9F2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9F2_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.700e-32
Identity = 64/150 (42.67%), Postives = 88/150 (58.67%), Query Frame = 1
Query:   16 DDPELKLEQLWTFEYNDKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSAD----------------VHSNADHGVQSLEFHPDWDLGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGDD---NGGYKWWDQCPCL 408
            DD  + +E LW ++ +D+PTM++FVPG+D V+   K G LR Y+SID+D + + +++DM+AD                V+S  DHG+ S EFHPDWD GV   FVLYTGEPK V+ LPN   +   RP  +G       G  W D+C  L
Sbjct:   38 DDDNVLVELLWAWDVDDRPTMIKFVPGADQVMVAHKLGTLRLYDSIDSDVNDYKLLVDMTADLXXXXXXXXXXXXXXXVNSITDHGITSFEFHPDWDGGVRKLFVLYTGEPKDVRKLPNYKVVLPYRPPAYGTGPPGTHGQTWGDECEGL 187          
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A835YQG5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQG5_9STRA)

HSP 1 Score: 108 bits (271), Expect = 7.110e-26
Identity = 62/157 (39.49%), Postives = 89/157 (56.69%), Query Frame = 1
Query:   25 ELKLEQLWTFE-----YNDKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWD---LGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGDDNGGYKW--WDQ----CPCLDCEGTGQNENGLLCE 453
            +L +EQ+W F+      N   T L ++PG++ VI   K G L  Y++IDA  D++  + DM+ DV S  DHG+    FHP++    +G ++ F+LY+G+PK V  LPN+AA+  +RP GWG    G K   WD+    CP L  E    N  G LCE
Sbjct:    1 DLVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPAL--EKPLNNYGGKLCE 155          
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A835ZCB5_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB5_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.240e-21
Identity = 53/119 (44.54%), Postives = 74/119 (62.18%), Query Frame = 1
Query:  505 TKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFT------------IIDTGLPE-DGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 822
            TKD+TL    CG+SS+HGPG L+ VG +++F +GDG+QF             +ID G P+ DGCF P  G  QG  R+ R DF +GK+  +P  L+DS   +  DQ+ V+++G RQPFR
Sbjct:    2 TKDLTLYVGVCGSSSTHGPGTLINVGANMIFAMGDGAQFAAVDEKYIPAPLNVIDPGFPQTDGCFVPGAGADQGEFRSQRMDFPHGKVLMIPGKLLDSKVPITLDQLVVVSRGNRQPFR 120          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A835ZE02_9STRA1.960e-210100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YZK9_9STRA3.710e-9449.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXY7_9STRA7.010e-8740.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVH6_9STRA3.150e-8650.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CK08_9STRA1.410e-7551.24Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YGZ7_9STRA3.470e-6842.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCH6_9STRA1.540e-6740.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z9F2_9STRA2.700e-3242.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQG5_9STRA7.110e-2639.49Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZCB5_9STRA3.240e-2144.54CBM6 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_13contigContig_13:1305492..1309061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|138480|gw1.13.81.1
Hectar predicted targeting categoryother localisation
TranscriptId138802
TrackFilteredModels1
ProteinId138480
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138480gene_5858Tribonema minus UTEX_B_3156 geneContig_13 1305492..1309061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138480Trimin1|138480|gw1.13.81.1Tribonema minus UTEX_B_3156 polypeptideContig_13 1305492..1309061 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5858_4exon_5858_4Tribonema minus UTEX_B_3156 exonContig_13 1305492..1305530 -
exon_5858_3exon_5858_3Tribonema minus UTEX_B_3156 exonContig_13 1306016..1306094 -
exon_5858_2exon_5858_2Tribonema minus UTEX_B_3156 exonContig_13 1306612..1306842 -
exon_5858_1exon_5858_1Tribonema minus UTEX_B_3156 exonContig_13 1308589..1309061 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5858CDS_5858Tribonema minus UTEX_B_3156 CDSContig_13 1308589..1309061 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5858 ID=mRNA_5858|Name=jgi.p|Trimin1|138480|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=822bp|location=Sequence derived from alignment at Contig_13:1305492..1309061- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGCTGCAGCCTAACGACGATCCGGAGCTCAAGCTGGAGCAACTCTGGAC
GTTTGAGTACAACGACAAGCCAACCATGCTGCGGTTTGTCCCCGGCTCTG
ACGCAGTCATCACCGTCGGCAAGACGGGCGTGCTGCGCTGGTACAACTCC
ATTGACGCTGACAAGGACAAATTCACGGTCATGCTGGACATGTCTGCGGA
TGTGCACTCCAATGCGGACCATGGCGTGCAGTCCCTGGAGTTCCACCCGG
ACTGGGACTTGGGCGTGCACACTGCATTTGTGCTGTACACGGGCGAGCCC
AAGAGCGTCAAGACGCTGCCCAATGAGGCCGCCATCAAAAGCATGCGGCC
AGATGGGTGGGGGGACGATAATGGGGGGTACAAGTGGTGGGACCAGTGCC
CATGCCTGGACTGCGAGGGAACGGGGCAGAACGAGAATGGGCTGCTGTGC
GAGCACCCGTATTACATTGACAGAATCAACATAGACGTCAAGAAAGGCAA
GGCCACGAAGGACATCACCCTGCTGCAGGCAGCCTGCGGAGCTAGCTCTT
CCCACGGTCCAGGGCACCTCCTTCGAGTCGGCGATGATATCTTGTTTGGC
GTTGGCGATGGGTCTCAGTTCACCATCATAGATACGGGTTTGCCAGAGGA
TGGGTGCTTTGATCCGGACAAGGGCAAGGGACAGGGATCGCTGCGGGCCA
TCAGGGATGACTTCAACAACGGCAAAATACGGCGGCTGCCCTACAATCTC
ATGGATAGCCCAGAGGAGCTCGAAGGCGACCAGGTGCCAGTCATAGCTAA
GGGCGTGCGGCAGCCCTTCAGG
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protein sequence of jgi.p|Trimin1|138480

>Trimin1|138480|gw1.13.81.1 ID=Trimin1|138480|gw1.13.81.1|Name=jgi.p|Trimin1|138480|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=274bp
PLQPNDDPELKLEQLWTFEYNDKPTMLRFVPGSDAVITVGKTGVLRWYNS
IDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWDLGVHTAFVLYTGEP
KSVKTLPNEAAIKSMRPDGWGDDNGGYKWWDQCPCLDCEGTGQNENGLLC
EHPYYIDRINIDVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFG
VGDGSQFTIIDTGLPEDGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNL
MDSPEELEGDQVPVIAKGVRQPFR
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mRNA from alignment at Contig_13:1305492..1309061-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5858 ID=mRNA_5858|Name=jgi.p|Trimin1|138480|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3570bp|location=Sequence derived from alignment at Contig_13:1305492..1309061- (Tribonema minus UTEX_B_3156 )
CCGCTGCAGCCTAACGACGATCCGGAGCTCAAGCTGGAGCAACTCTGGAC GTTTGAGTACAACGACAAGCCAACCATGCTGCGGTTTGTCCCCGGCTCTG ACGCAGTCATCACCGTCGGCAAGACGGGCGTGCTGCGCTGGTACAACTCC ATTGACGCTGACAAGGACAAATTCACGGTCATGCTGGACATGTCTGCGGA TGTGCACTCCAATGCGGACCATGGCGTGCAGTCCCTGGAGTTCCACCCGG ACTGGGACTTGGGCGTGCACACTGCATTTGTGCTGTACACGGGCGAGCCC AAGAGCGTCAAGACGCTGCCCAATGAGGCCGCCATCAAAAGCATGCGGCC AGATGGGTGGGGGGACGATAATGGGGGGTACAAGTGGTGGGACCAGTGCC CATGCCTGGACTGCGAGGGAACGGGGCAGAACGAGAATGGGCTGCTGTGC GAGCACCCGTATTACATTGACAGGTGGGTCGCAATGAAAGAAAGTATGTC ATGTGTGATAAATGCAAATTCGAAGCTTTGGTGTCTGCTACTTCACTGCA CCTAGATGCAGGCGGGACCCCGTTTTCACCGGCAGCAGTTTCATATGTCG CGCACTAACGCAGGCTGTAACATTGCCCTGCCAGCTTGTGGGAGCACTTA CATGGTCACTGAAGCTTGTAAATAAAAACCACTCACCCATCAAGTTTATG TATACGCAGTCATCATCAAAATGGCAGCCTGTAGGAAAAGGCACAAAGTG CGTTCAGTTTGTGATGCATTATGCTTACTTATGTTGCGGGCTGAACAGCA GAACAACATTTGACAAGCACGAGGGGTGTGGCACTGACGCATCATCCATA CAAGGTTCTTGAATGTGATCGTGGATGCCCATGATTAGATTGCAAGCAGT GAAGAATGTCTTGTTTGACAGCCACGCCACGATGAACACAGATTAACAAA CATCAAACTGTCAAGGCACAGGTGTCTGCTAGTATAATCAAGATGCTTTT TTTGGTGGGCCAAGGTGCCATGAGGGCTGATGTACCCTTCCAGGTCTTTG TGGTCATAGGTGCTGGCATTGTTGGTACCCCGTGCTTGTGACAATAATGC TGCTGGTTACGATAATCGCTTCAAAATGCGAAACACACTGCGGAATGTTC CTTCTTGGCAGCTCCTAACTTTGCTATCTATCTGAAGCCCTTGGATAAAC GGTGCGCGTGGTGAGCCAACAGCAGATCAGCAAGCGTGGTGATTTGCCTT AAAACATCAGGTTTCCGCACCACGTGCTTGCTTCAACAATGGCAGCCATT GTCATGATGGGCAGCGCCAACAGTACTGCTGCAACTGTCCATGGATGAAA TTGTGGCACCTGTGAGCAACACAATTGCTGTGGTGGGAAGGGCCGTAAAT CACTAGGCGATTGTAGCACGATGATGTCACTGCGTAGGTATGTAACTATT TGCCTTCATTATGTTGAAGTCCTGGAGCAATAGCAATAAGCAATAGCAAT TTCATGACGGCTGATAGAGTGTTGTGGTTAATCAACTTTGCTCCATACGT AAGCAGGGGATACAATTGAAGTTTTACAATGCACCATTGATCAGGAAGAC TGAGGGAGACGGCAATCTGACCCTGACAAGCCATGACTTGTACGTGTCAA CTTCGTGGCTGCCGAAGCCGCTGCTGCTGCATTGTCAATTTGTTGTTGGT TTGACATGGTTAGCATCCAGCACCAGTGAGACGTATGCGGCAGGACTGCC CTTGCCACAGGGGCACATATGCACCGCATGCACTCTGCGGTGCATGGGCA GTACTGTCTTTGTGCTAGCCTAAGCTCAGTAAAAGAGCAAGCCGACTAGC AGCAGGAGGCCCATGGAGTGAATCTTCCACCGCAATGCAATGCACATTGC TGATCATCTCTACATCCTGAACATCAAACTGAATTTGGCCAATGTGGTGG CCCAATCTTGTATTGCTCACTCATATCTACACCACACATCATGTGCTGCA CAGAGTTGCTATTTGTCATGCAGGGCATTTTCTCATGAAAATCTCACCCC TTACTTGTCCGATGTAAACATGACCCCCCTTGCCAGTGCTGTATTACTTC CAGAGTTGGTAAATCAGCAAGTGTGTACAGTACCCGTTGGCCTCCTCATA CTTGATGCTTCACCGGCCATTTACGTTGCTGCTGCATGGCGGACCTTTTC ATTTGCCTCTGGTGCGCAGAATCAACATAGACGTCAAGAAAGGCAAGGCC ACGAAGGACATCACCCTGCTGCAGGCAGCCTGCGGAGCTAGCTCTTCCCA CGGTCCAGGGCACCTCCTTCGAGTCGGCGATGATATCTTGTTTGGCGTTG GCGATGGGTCTCAGTTCACCATCATAGATACGGGTTTGCCAGAGGATGGG TGCTTTGATCCGGACAAGGGCAAGGGACAGGGATCGCTGCGGGCCATCAG GTGAGAACACTCTCAAGGCGTGCCAACAATTGGCACATACACTCTGTGCA AGAAGCACTAATTGAACAGGTGATGTGCACATTGCATGAAGCATGGCCCT CTGTATGAACCATCCTTGTTGCAATGGCTAGTGATTGGCAGTACATGGTG AGAGCAATGCCCCCGCACACTGCCTACTTAGCTGGTCGCCTTCAGTCTTT TCTTTTTACGAGCAAGGTCAGGCTTTACCTGGTATTCCTGGTACAGGCTT TACCTGGTATTCCTTGTACTCATAGAGTGTTGCAGTGCTCAGGAACAAAT GGCTCATCAGGAATGCTTCGATTACGCCAGGTCATACTATGCTTTCTGTC AATGCTGCTTATCAAGAAGCCGTGCTGCAGGTTTCATGTGGCTGCTTCGA TGACAGGGCGGTGCACAATGTGTTTGCTTATGTACAACATAAATGCATGA TGCCTTGACAGTCAGCCATAGACCGCATCACATGTGCTGAGTCATTGCGT GGTCTGCTTATGCACAGGGATGACTTCAACAACGGCAAAATACGGCGGCT GCCCTACAATCTCATGGATAGCCCAGAGGAGCTCGAAGGCGACCAGGTAA TACCCACGCTACCTGCTTCTGCTGTCATGGCCTGCCGCAGTACAACATGC TCTAGTAGATCGGAAAGCAGTGAATCGCAGAGTGCAGAGCACGGCACCTA ATCCTTCATTCATCCTTCAAACTTATCTTGAGTCGCTACTTTGAACAATA ACAGTCATAAATGACTGCAAAAGAGTGTTGACGAGAACACGGAGATGTGA TTGATCAGTTGCATTATAAGTCACCCACCCGAAGATGTGATGTGGGTTCT CCGCTTTTGCTTCTGCACCACTGAGTGGGGCATCTTGCTGAGCTTTCTCA GCTTTAGATTAAGCCTTGCAACCCACAGAGTGTTTTTATACTTCGCAGTA CTTCCCTTGAAGCAGAACGCCTTTTGGCAAAAACTGCATGTGGTCTGTAT AATATACTTCTGGATGACTTTCCTTCGCCATGAAACACCCCCCCCCGTCC CCCCTCCCCCTGTGCTCTTTTCTTGCCCCAGGTGCCAGTCATAGCTAAGG GCGTGCGGCAGCCCTTCAGG
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Coding sequence (CDS) from alignment at Contig_13:1305492..1309061-

>mRNA_5858 ID=mRNA_5858|Name=jgi.p|Trimin1|138480|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=822bp|location=Sequence derived from alignment at Contig_13:1305492..1309061- (Tribonema minus UTEX_B_3156 )
CCGCTGCAGCCTAACGACGATCCGGAGCTCAAGCTGGAGCAACTCTGGAC
GTTTGAGTACAACGACAAGCCAACCATGCTGCGGTTTGTCCCCGGCTCTG
ACGCAGTCATCACCGTCGGCAAGACGGGCGTGCTGCGCTGGTACAACTCC
ATTGACGCTGACAAGGACAAATTCACGGTCATGCTGGACATGTCTGCGGA
TGTGCACTCCAATGCGGACCATGGCGTGCAGTCCCTGGAGTTCCACCCGG
ACTGGGACTTGGGCGTGCACACTGCATTTGTGCTGTACACGGGCGAGCCC
AAGAGCGTCAAGACGCTGCCCAATGAGGCCGCCATCAAAAGCATGCGGCC
AGATGGGTGGGGGGACGATAATGGGGGGTACAAGTGGTGGGACCAGTGCC
CATGCCTGGACTGCGAGGGAACGGGGCAGAACGAGAATGGGCTGCTGTGC
GAGCACCCGTATTACATTGACAGAATCAACATAGACGTCAAGAAAGGCAA
GGCCACGAAGGACATCACCCTGCTGCAGGCAGCCTGCGGAGCTAGCTCTT
CCCACGGTCCAGGGCACCTCCTTCGAGTCGGCGATGATATCTTGTTTGGC
GTTGGCGATGGGTCTCAGTTCACCATCATAGATACGGGTTTGCCAGAGGA
TGGGTGCTTTGATCCGGACAAGGGCAAGGGACAGGGATCGCTGCGGGCCA
TCAGGGATGACTTCAACAACGGCAAAATACGGCGGCTGCCCTACAATCTC
ATGGATAGCCCAGAGGAGCTCGAAGGCGACCAGGTGCCAGTCATAGCTAA
GGGCGTGCGGCAGCCCTTCAGG
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