mRNA_5742 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: A0A835ZGU7_9STRA (Mitochondrial carrier domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGU7_9STRA) HSP 1 Score: 469 bits (1208), Expect = 5.220e-166 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1 Query: 1 ARSSLSVARHIIQCRGAAGLYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDDGGHSESGKPPPSILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKERSGALSLQLLRSLSGHRPPP 828 ARSSLSVARHIIQCRGAAGLYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDDGGHSESGKPPPSILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKERSGALSLQLLRSLSGHRPPP Sbjct: 1 ARSSLSVARHIIQCRGAAGLYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDDGGHSESGKPPPSILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKERSGALSLQLLRSLSGHRPPP 276
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: D7FS27_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS27_ECTSI) HSP 1 Score: 194 bits (493), Expect = 1.560e-56 Identity = 114/258 (44.19%), Postives = 159/258 (61.63%), Query Frame = 1 Query: 7 SSLSVARHIIQCRGAAGLYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAM---TDDGGHSESGKPPPSILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKER 771 S SVA+ I G AGLY GV Y+ + +EKAAYFYGYGWL+ A+ G D+ LGY A+A HLP T+P+++VL +++T++ + A +++GIL G G Y G +AY VLCLKPA+QYA+FNRL+ LA L+A QAF +GAI+RA+ATV VFP+ RAKV+ M T +G + + P SIL SL+ + + +G ALF+G+ PE+ RGVLSAALM+++KE+ Sbjct: 98 SVASVAKDIYSREGIAGLYRGVWYASTQSGVEKAAYFYGYGWLKALALRGGGRGELSTAKDLGLGYLAEAFHLPFTIPIEVVLTKIMTSKEKTN---AFAVIQGILSESGPAGFYTGIQAYAVLCLKPAIQYAVFNRLKAITLAYRSDGRSSAQPKE----------LTAVQAFVIGAISRAVATVIVFPYIRAKVIIMSKKTGEGSGNGTKSPSTSILSSLITLLKDDGFSALFQGITPEIGRGVLSAALMMLVKEK 342
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: A0A6A4AHM2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4AHM2_9STRA) HSP 1 Score: 169 bits (428), Expect = 2.430e-47 Identity = 104/248 (41.94%), Postives = 143/248 (57.66%), Query Frame = 1 Query: 58 LYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDDGGHSESGKPPPS----------ILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKER 771 LY G++Y E + K YFY Y L + VA + G+P G L D+ +GY ++ CHLP+T+P++LV R+ T GSGG I+R I++ G GLY+G AY VLCL+PA+QY +F RL+G L L A +AF LGAIAR+IAT+ +FP+ RAKVL T+ + + + I +L + R EGP AL++G+GPELTRG LS+ALMLMIKE+ Sbjct: 69 LYQGIQYKAAESSTSKFLYFYAYTMLAQM-VAPKDGQPIGTLTDLGIGYLSEMCHLPITMPMELVGTRMQT---GSGGGSIIQILRSIVRESGVGGLYKGLGAYFVLCLQPAIQYTVFERLKGVYLRKFKQASQ---------------ALGALEAFVLGAIARSIATLILFPYIRAKVLMQTNKKKQTTTADQEQAQTCVELKKETIASTLQRVYREEGPLALYRGLGPELTRGALSSALMLMIKEK 297
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: A0A662X3A5_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X3A5_9STRA) HSP 1 Score: 167 bits (423), Expect = 1.350e-46 Identity = 105/245 (42.86%), Postives = 142/245 (57.96%), Query Frame = 1 Query: 58 LYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDDGGHSESGK-PPPS------ILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKER 771 LY G++Y E + K YFY Y L + VA G+P G L D+A+GY ++ CH+P+TLP++LV RL T+ S G I+R I+ G GLY+G AY VLCL+PA+QY +F RL+G L +L A +AF LGA+AR+IAT+ +FP+ RAKVL G+ P PS I +L + + EGP AL++G+GPELTRG LS+ALMLMIKE+ Sbjct: 72 LYQGIQYKAAESSTSKFLYFYSYTMLAQM-VAPSDGKPIGTLTDLAIGYVSELCHIPITLPMELVGTRLQTS---SESGGVFQIIRTIIGESGLGGLYKGLGAYFVLCLQPAIQYTVFERLKGWYLRRFKQAAQ---------------SLGALEAFVLGAVARSIATLVLFPYIRAKVLMQAKKKAAVAEGELPKPSDGKKETIASTLQRVYKEEGPLALYRGLGPELTRGALSSALMLMIKEK 297
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: A0A3R7FXG1_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FXG1_9STRA) HSP 1 Score: 164 bits (414), Expect = 2.870e-45 Identity = 105/249 (42.17%), Postives = 142/249 (57.03%), Query Frame = 1 Query: 58 LYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDD----GGHSESGKPPPS-------ILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKER 771 LY G++Y E + K YFY Y L + VA R G+P G L D+A+GY ++ CHLP+T+P++LV RL T+ S G I+R I++ G GLY+G A VLCL+PA+QY +F RL+G L L A +AF LGAIAR+IAT+ +FP+ RAKVL G G+ P + I +L + + EGP AL++G+GPELTRG LS+ALMLMIKE+ Sbjct: 67 LYQGIQYKAAESSTSKFMYFYAYTMLAQM-VAPRDGKPIGTLTDLAIGYMSELCHLPVTMPMELVGTRLQTS---SESGGVLQILRTIVRESGVGGLYKGLGACFVLCLQPAIQYTVFERLKGVYLRKFKQASQ---------------VLGALEAFVLGAIARSIATLVLFPYIRAKVLMQAKKKQTAGADLNQGQVPSAGGAKKETIASTLQRVYKEEGPLALYRGLGPELTRGALSSALMLMIKEK 296
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: G4Z3D3_PHYSP (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=G4Z3D3_PHYSP) HSP 1 Score: 163 bits (412), Expect = 3.300e-45 Identity = 101/238 (42.44%), Postives = 138/238 (57.98%), Query Frame = 1 Query: 58 LYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDDGGHSESGKPPPSILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKER 771 LY G++Y E + K YFY Y L + VA +GG+P G L D+ +GY ++ CHLP+T+P++LV R+ T G SGG+ ++R I+K G GLY+G AY VLCL+PA+QY +F RL+G L L A +AF LGAIAR+IAT+ +FP+ RAK +I +L + EGP AL++G+GPELTRG LS+ALMLMIKE+ Sbjct: 72 LYQGIQYKAAESSTSKFLYFYAYTMLAQM-VAPKGGKPIGTLTDLGIGYLSELCHLPITMPMELVGTRMQTGSG-SGGSILH-VLRSIVKESGIGGLYKGLGAYFVLCLQPAIQYTVFERLKGVYLRKFKQASQ---------------ALGALEAFVLGAIARSIATLVLFPYIRAKK----------------ETIASTLQRVYTEEGPLALYRGLGPELTRGALSSALMLMIKEK 275
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: A0A3M6VNL6_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VNL6_9STRA) HSP 1 Score: 160 bits (406), Expect = 4.010e-44 Identity = 101/247 (40.89%), Postives = 137/247 (55.47%), Query Frame = 1 Query: 58 LYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDDGGHSE---------SGKPPPSILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKER 771 LY G++Y E + K YFY Y L + A + G+P G L D+ +GY ++ CHLP+T+P++LV R+ T GS I+R I+K G GLY+G AY VLCL+PA+QY +F RL+ L L A + F LGAIAR+IAT+ +FP+ RAKVL T S +P +I +L + EGP AL++G+GPELTRG LS+ALMLMIKE+ Sbjct: 65 LYQGIQYKAAESSTSKFMYFYAYTMLAQMATP-KDGKPIGTLTDLGIGYLSELCHLPVTMPMELVGTRMQT---GSESGSILQILRSIIKESGVGGLYKGLGAYFVLCLQPAIQYTVFERLKNLYLRKFKQASQ---------------ALGALEVFVLGAIARSIATIILFPYIRAKVLMQTKPKQKDARNLVKDQDISTEPKKTIASTLQRVYTEEGPLALYRGLGPELTRGALSSALMLMIKEK 292
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: H3GLF6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GLF6_PHYRM) HSP 1 Score: 160 bits (404), Expect = 7.950e-44 Identity = 100/244 (40.98%), Postives = 142/244 (58.20%), Query Frame = 1 Query: 58 LYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDDG-----GHSESGKPPP-SILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKER 771 LY G++Y E + K YFY Y L + V + G+P G L D+ +GY ++ HLP+T+P++LV R+ T+ S G I+R I+K G GLY+G AY VLCL+P +QY +F RL+G L +L A +AF LGA+AR+IAT+A+FP+ RAKVL + ++ G+P +I +L + EGP AL++G+GPELTRG LS+ALMLMIKE+ Sbjct: 68 LYQGIQYKAAESSTSKFLYFYAYTMLAQM-VTPKDGKPIGTLTDLGIGYLSELLHLPITMPMELVGTRMQTS---SESGGILQILRSIIKENGVGGLYKGLGAYFVLCLQPTIQYTVFERLKGMYLRKFKQASQ---------------SLGALEAFMLGALARSIATLALFPYIRAKVLMQANKKKQTAVADAKQGEPKKETIASTLQRVYTEEGPLALYRGLGPELTRGALSSALMLMIKEK 292
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: A0A484DZY2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZY2_BRELC) HSP 1 Score: 157 bits (398), Expect = 6.190e-43 Identity = 103/248 (41.53%), Postives = 141/248 (56.85%), Query Frame = 1 Query: 58 LYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAM---------TDDGGHSESGKPPPSILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKERS 774 LY G++Y LE + K YFY Y L + A A + G+P G D+++GY ++ CHLP+T+P++LV R+ T + G D IV I++ G RG Y+G AY VLCL+PA QY +F+RL+ L TL A +AF LGAIAR+IAT+ +FP+ RAKVL T+ S + +I +L + EGP AL+ G+GPELTRG LS+ALMLMIKE+S Sbjct: 65 LYQGIQYKALESSTSKFLYFYAYTMLAQWA-APKDGKPIGTFTDMSIGYLSELCHLPITMPMELVGTRMQTDS--NSGCIVD-IVSSIVRESGIRGFYKGLGAYFVLCLQPAFQYTVFDRLKSIYL---------------HKYNKASETLGALEAFVLGAIARSIATLVLFPYIRAKVLMQASKINNTVPTESQRKSRAVFWDKTIASTLQRVYIDEGPLALYHGLGPELTRGALSSALMLMIKEKS 293
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: A0A7S4L290_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4L290_GUITH) HSP 1 Score: 155 bits (393), Expect = 4.270e-42 Identity = 100/264 (37.88%), Postives = 150/264 (56.82%), Query Frame = 1 Query: 13 LSVARHIIQCRGAAGLYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDDGGHSESGKPPPSILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKERSGALSLQLLRS 804 +SVA+ + + G G Y G +YS ++ A EKA YF+GY ++ + G G + V G A+ HLP+TLP+ V R+ T +G A I+ I++ G +GLY G AY+VLCLKPA+ Y +F+ L+ +L L+A +AF +GAIARA+AT+AVFP+TRAKV+ + + G+ PSI ++ I + EG +L++G PE+TRGVLSAA+ML +KE+ A Q++R+ Sbjct: 64 ISVAKDLYKSEGVPGFYKGFQYSAIQSATEKAIYFWGYTYILKTWKKLFG--DVGTASSVLCGCLAEWVHLPVTLPIDAVTVRIQTVKGSK--ANPLQILASIIRESGIKGLYSGWTAYIVLCLKPAITYGLFDALKRWILKRNSMRGGREVK-----------VLTALEAFLIGAIARAVATIAVFPYTRAKVIVKSS---QVQPGEQAPSIAGTVSRIVKNEGFLSLYQGCTPEVTRGVLSAAIMLAVKEKIAATVRQMVRN 309 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5742 ID=mRNA_5742|Name=jgi.p|Trimin1|137336|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=828bp|location=Sequence derived from alignment at Contig_13:13252..14079- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCCCGCAGCTCCCTCTCGGTCGCCCGACACATCATACAGTGCAGGGGCGCback to top protein sequence of jgi.p|Trimin1|137336 >Trimin1|137336|gw1.13.68.1 ID=Trimin1|137336|gw1.13.68.1|Name=jgi.p|Trimin1|137336|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=276bp ARSSLSVARHIIQCRGAAGLYDGVEYSVLEGALEKAAYFYGYGWLRRAAVback to top mRNA from alignment at Contig_13:13252..14079- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5742 ID=mRNA_5742|Name=jgi.p|Trimin1|137336|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=828bp|location=Sequence derived from alignment at Contig_13:13252..14079- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_13:13252..14079- >mRNA_5742 ID=mRNA_5742|Name=jgi.p|Trimin1|137336|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=828bp|location=Sequence derived from alignment at Contig_13:13252..14079- (Tribonema minus UTEX_B_3156 )back to top |