mRNA_14172 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175446
Unique NamemRNA_14172
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|175446 vs. uniprot
Match: A0A835ZG64_9STRA (Guanylyl cyclase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG64_9STRA)

HSP 1 Score: 488 bits (1256), Expect = 1.270e-173
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 1
Query:    1 MPQEAAASATQALSTAATESGPSVSGEFLPGLHKLGHQKQLSTWDCGVACLMMVLSSLNRDHTRDTLLAALGTNSVWTIDLALILHEHGICFHFLTRSTGVSPAYKGIAFYRSQFDADAARVTRRFREARRRNLAVGVGSLEIADIRRLVELDACAVLVLVDARHLPHHFKSAAASAAAVAGSGATAAAPNAGALPPAQASYRGHYVLLLGYADDGEGXXXXXXXXXGAFVARDPAVPEEHVLIAATVLDAARRSFGTDEDMLVIDL 801
            MPQEAAASATQALSTAATESGPSVSGEFLPGLHKLGHQKQLSTWDCGVACLMMVLSSLNRDHTRDTLLAALGTNSVWTIDLALILHEHGICFHFLTRSTGVSPAYKGIAFYRSQFDADAARVTRRFREARRRNLAVGVGSLEIADIRRLVELDACAVLVLVDARHLPHHFKSAAASAAAVAGSGATAAAPNAGALPPAQASYRGHYVLLLGYADDGEGXXXXXXXXXGAFVARDPAVPEEHVLIAATVLDAARRSFGTDEDMLVIDL
Sbjct:    1 MPQEAAASATQALSTAATESGPSVSGEFLPGLHKLGHQKQLSTWDCGVACLMMVLSSLNRDHTRDTLLAALGTNSVWTIDLALILHEHGICFHFLTRSTGVSPAYKGIAFYRSQFDADAARVTRRFREARRRNLAVGVGSLEIADIRRLVELDACAVLVLVDARHLPHHFKSAAASAAAVAGSGATAAAPNAGALPPAQASYRGHYVLLLGYADDGEGXXXXXXXXXGAFVARDPAVPEEHVLIAATVLDAARRSFGTDEDMLVIDL 267          
BLAST of jgi.p|Trimin1|175446 vs. uniprot
Match: D8LB31_ECTSI (Chromosome 22 open reading frame 13, isoform CRA_c n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB31_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.090e-34
Identity = 94/257 (36.58%), Postives = 118/257 (45.91%), Query Frame = 1
Query:   91 GLHKLGHQKQLSTWDCGVACLMMVLSSLNRDHTRDTLLAALGTNSVWTIDLALILHEHGICFHFLTRSTGVSPAYKGIAFYRSQFDADAARVTRRFREARRRNLAVGVGSLEIADIRRLVELDACAVLVLVDARHLPHHFKSAAASAAAVAGSGATAAAPNAGALPPAQASYRGHYVLLLGYADDGEGXXXXXXXXXGAFVARDPAVPEE------------------HVLIAAT--VLDAARRSFGTDEDMLVIDL 801
            GL K  H  Q+  WDCGV+C  MVL  L R+  R +LLA+LGT SVWTIDLA++LH  G+ F + TR+ GV+ AY  I FYR+ FD DA RV   F+ AR  +     G                                                      A PP  +SY GHY+LL+G+++             G F+ARDPA+P                    H  IA T   LD ARRS+GTDED+LVIDL
Sbjct:   28 GLWKAPHVSQICHWDCGVSCAQMVLRGLGREAERSSLLASLGTRSVWTIDLAMLLHRQGVRFMYGTRTAGVTEAYSTIDFYRANFDHDAPRVQSLFKAARLESPPASGGDRA---------------------------------------------------ASPPRDSSYCGHYILLVGWSE-----------ADGVFIARDPALPSSTPSTATAPGGAGGGDPNAHACIALTPEALDRARRSYGTDEDVLVIDL 222          
BLAST of jgi.p|Trimin1|175446 vs. uniprot
Match: A0A199VJD8_ANACO (Protein GUCD1 n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A199VJD8_ANACO)

HSP 1 Score: 125 bits (313), Expect = 6.500e-31
Identity = 78/235 (33.19%), Postives = 119/235 (50.64%), Query Frame = 1
Query:  109 HQKQLSTWDCGVACLMMVLSSLNRD----HTRDTLLAALGTNSVWTIDLALILHEHGICFHFLTRSTGVSPAYKGIAFYRSQFDADAARVTRRFREARRRNLAVGVGSLEIADIRRLVELDACAVLVLVDARHLPHHFKSAAASAAAVAGSGATAAAPNAGALPPAQASYRGHYVLLLGYADDGEGXXXXXXXXXGAFVARDPAVPEEHVLIAATVLDAARRSFGTDEDMLVIDL 801
            H +QL  WDCG+AC++MVL +L  +    H  + L +   T S+WT+DLA +LH+  + F F T + GV+P Y    FYR Q + D +RV   F +A    +++   S+   DI  L+    C  + LVD   L + +     ++   +G                ++ Y GHY+++ GY  DG           G F  RDPA   +H  ++   LD AR+SFGTDED+L++ L
Sbjct:   50 HVRQLFNWDCGLACVLMVLRALGIECCDIHDLEKLCS---TTSIWTVDLAFLLHKFSVNFSFFTVTLGVNPNYSAETFYREQLEDDTSRVGELFEKALEAGISIQCRSISSKDISILLLSGHCIAVALVDKTKLSNSWMHDVRASECYSG----------------RSDYMGHYIVICGY--DGNA---------GEFEIRDPASSRKHERVSMECLDEARKSFGTDEDILLVSL 254          
BLAST of jgi.p|Trimin1|175446 vs. uniprot
Match: A0A2K3DBN7_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DBN7_CHLRE)

HSP 1 Score: 124 bits (312), Expect = 1.090e-29
Identity = 82/234 (35.04%), Postives = 119/234 (50.85%), Query Frame = 1
Query:   97 HKLGHQKQLSTWDCGVACLMMVLSSLNRDHTRDTLLAAL-GTNSVWTIDLALILHEHGICFHFLTRSTGVSPAYKGIAFYRSQFDADAARVTRRFREARRRNLAVGVGSLEIADIRRLVELDACAVLVLVDARHLPHHFKSAAASAAAVAGSGATAAAPNAGALPPAQASYRGHYVLLLGYADDGEGXXXXXXXXXGAFVARDPAVPEEHVLIAATVLDAARRSFGTDEDMLVI 795
            H + H KQ  +WDCG+AC+ MV+ +    H    LL  L  T S+WT+DLA +L   G+   F T + G +PAY   +FY    + D  RV++ F EA    +AV   S+   +++  +    C ++VLVD R L     +    +  + G   +   P    L   +  Y GHYVLL+G+ D G             +  RDPA   + + + A  LDAARRSFGTDED+LV+
Sbjct:   90 HHVPHCKQFFSWDCGLACVQMVIQAAGFSHCDYRLLRQLCTTTSIWTVDLAHLLRRFGLHVSFYTVTLGPNPAYANESFYMENMEDDERRVSQLFVEAAHVGIAVEQRSVSSEELQSWMLSGGCLIIVLVDKRKLDPWLGAGEPGSGGMGGMSMSMCLP--AVLCGMELGYAGHYVLLVGF-DAGT----------QEYTIRDPAAQVQTLRVTAAALDAARRSFGTDEDILVV 310          
BLAST of jgi.p|Trimin1|175446 vs. uniprot
Match: A0A7S0RZ62_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RZ62_9CHLO)

HSP 1 Score: 121 bits (303), Expect = 4.660e-29
Identity = 89/240 (37.08%), Postives = 119/240 (49.58%), Query Frame = 1
Query:   97 HKLGHQKQLSTWDCGVACLMMVLSSLNRDHTRDTLLAAL-GTNSVWTIDLALILHEHGICFHFLTRSTGVSPAYKGIAFYRSQFDADAARVTRRFREARRRNLAVGVGSLEIADIRRLVELDACAVLVLVDARHLPHHFKSAAA----SAAAVAGSGATAAAPNAGALPPAQASYRGHYVLLLGYADDGEGXXXXXXXXXGAFVARDPAVPE--EHVLIAATVLDAARRSFGTDEDMLVI 795
            H++ H KQL  WDCG+AC MMVL ++   H    LL  L  T S+WTIDLA +L   G+   F T + G +PAY   +FY +    D  RV+R FR+A    ++V   S+   ++   +      VLVLVD R L     +A A    +   +AGS                  Y GHY+LL+GY  DG           G F+ RDPA     E   I    LDAAR++FGTDED+L +
Sbjct:   49 HRVPHVKQLFNWDCGLACAMMVLKAVGLHHCDYALLRQLCPTTSIWTIDLAHLLRRFGLGVAFTTITLGPNPAYANESFYSASLQEDERRVSRLFRDAHGAGISVAQRSVGAQELACALLAADTLVLVLVDKRRLDPWLAAADACLPYALCGLAGSDVV--------------GYTGHYILLVGY--DGA---------RGEFLVRDPAGSSGGEPARITPGALDAARKAFGTDEDVLFL 263          
BLAST of jgi.p|Trimin1|175446 vs. uniprot
Match: A0A0A0K8F6_CUCSA (Uncharacterized protein n=3 Tax=Benincaseae TaxID=1003877 RepID=A0A0A0K8F6_CUCSA)

HSP 1 Score: 120 bits (301), Expect = 5.390e-29
Identity = 80/237 (33.76%), Postives = 117/237 (49.37%), Query Frame = 1
Query:   94 LHKLGHQKQLSTWDCGVACLMMVLSSLNRDHTRDTLLAAL-GTNSVWTIDLALILHEHGICFHFLTRSTGVSPAYKGIAFYRSQFDADAARVTRRFREARRRNLAVGVGSLEIADIRRLVELDACAVLVLVDARHLPHHFKSAAASAAAVAGSGATAAAPNAGALPPAQASYRGHYVLLLGYADDGEGXXXXXXXXXGAFVARDPAVPEEHVLIAATVLDAARRSFGTDEDMLVIDL 801
            L ++ H  QL  WDCG+AC++MVL+ L  +      LA L GT S+WT+DLA +L    + F + T + G  P Y   +FY+ +   D  RV R F++A    + +   SL   DI  L+       +VLVD R L                SG+         +  + +SY GHY+++ GY  D +            F  RDPA   +HV I++  LD AR+ FGTDED+L++ L
Sbjct:   52 LIEVPHINQLQQWDCGLACVLMVLNILGINGCDIQSLADLCGTRSIWTVDLAYLLQRFSVSFSYFTVTFGADPNYSVESFYKEELANDLVRVDRLFQKALEAGIKIECRSLSKEDISLLMLSGIYVAIVLVDQRRL----------------SGSWLEDILVSGICDSDSSYTGHYIVVCGYDADAD-----------EFEIRDPASTRKHVRISSNCLDGARKCFGTDEDILLVSL 261          
BLAST of jgi.p|Trimin1|175446 vs. uniprot
Match: A0A7S2W2S7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W2S7_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.280e-28
Identity = 78/236 (33.05%), Postives = 117/236 (49.58%), Query Frame = 1
Query:  109 HQKQLSTWDCGVACLMMVLSSLNRDHTRDTLLAALGTNSVWTIDLALILHEHGICFH--FLTRSTGVSPAYKGIAFYRSQFDADAARVTRRFREARRRNLAVGVGSLEIADIRRLVELDACAVLVLVDARHL---PHHFKSAAASAAAVAGSGATAAAPNAGALPPAQASYRGHYVLLLGYADDGEGXXXXXXXXXGAFVARDPAVPEEHVLIAATVLDAARRSFGTDEDMLVIDL 801
            H  Q  +WDCGVAC+ M+LS + R  T + L A LG  SVWTIDL  +L      F   F T + G   ++  + FY+++FD+DA R+ + F++A    L++   S+  AD++ LV      V++L+D R +   P  F S+                           SY GHYV+L G+ +  +            +  RDPA P E   + A  LD AR + GTDED+++ID+
Sbjct:  152 HVLQKRSWDCGVACVQMILSFVGRPRTFEELSAVLGATSVWTIDLVYLLRTFEFPFPCLFCTATVGAEESHSSLDFYKAEFDSDAVRINKLFQDAAEAGLSIEQTSVAQADLQALVSSCDILVIILLDFRIIRPQPRLFGSS---------------------------SYTGHYVVLCGFDNQAQ-----------VYSYRDPARPAERCFVTAAALDRARFADGTDEDLVIIDV 349          
BLAST of jgi.p|Trimin1|175446 vs. uniprot
Match: A0A250XKN1_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XKN1_9CHLO)

HSP 1 Score: 120 bits (301), Expect = 1.690e-28
Identity = 78/242 (32.23%), Postives = 115/242 (47.52%), Query Frame = 1
Query:  109 HQKQLSTWDCGVACLMMVLSSLN-------------RDHTRDTLLAALGTNSVWTIDLALILHEHGICFHFLTRSTGVSPAYKGIAFYRSQFDADAARVTRRFREARRRNLAVGVGSLEIADIRRLVELDACAVLVLVDARHLPHHFKSAAASAAAVAGSGATAAAPNAGALPPAQASYRGHYVLLLGYADDGEGXXXXXXXXXGAFVARDPAVPEEHVLIAATVLDAARRSFGTDEDMLVI 795
            H KQ  +WDCG+AC+ MV+ + N              +   D L     T S+WT+DLA +L   G+   FLT++ G +PAY    FY      D  RV++ F EA    +A+   SL   +++ +    AC V+ LVD R L     +A      + G          G+       Y GHYVL++G+    +            F+  DPA P   + ++A+ LD ARRSFGTDED+L++
Sbjct:   55 HCKQHFSWDCGLACVFMVVKAFNAAALQSTPQVSDPHESDYDKLRELCPTTSIWTVDLAHLLRRLGLEVCFLTKTLGPNPAYANEGFYMEHLQEDELRVSQLFSEANTAGIALHQRSLSSQELQEVAVTGACLVIALVDKRKLDPWLLTADLLCPTLLGGSEK------GSSCEGDGGYTGHYVLIVGFDISRQ-----------EFIVHDPAAPVSELRVSASALDLARRSFGTDEDLLIV 279          
BLAST of jgi.p|Trimin1|175446 vs. uniprot
Match: A0A833R9Z0_9POAL (Protein GUCD1 isoform X1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R9Z0_9POAL)

HSP 1 Score: 118 bits (295), Expect = 2.550e-28
Identity = 75/232 (32.33%), Postives = 114/232 (49.14%), Query Frame = 1
Query:  109 HQKQLSTWDCGVACLMMVLSSLNRDHTRDTLLAAL-GTNSVWTIDLALILHEHGICFHFLTRSTGVSPAYKGIAFYRSQFDADAARVTRRFREARRRNLAVGVGSLEIADIRRLVELDACAVLVLVDARHLPHHFKSAAASAAAVAGSGATAAAPNAGALPPAQASYRGHYVLLLGYADDGEGXXXXXXXXXGAFVARDPAVPEEHVLIAATVLDAARRSFGTDEDMLVIDL 801
            H +Q+  WDCG+AC++MVL +L  D    T L  L  T S+WT+DLA +LH+  + F FLT + GV+P+Y   +FY+ Q + D  RV   F +A    +++   ++ + DI  L+    C  + LVD   L   +                      G      + Y GHY+++ G+ D G             F  RDPA   ++  +    LD AR+SFGTDED+L++ L
Sbjct:   43 HVRQMFNWDCGLACVLMVLRTLGIDSYDITDLEDLCSTTSIWTVDLAYLLHKFSVNFSFLTVTVGVNPSYSAQSFYQEQLEDDTGRVIDLFAKAIHAGISIQCRTISVHDISLLLLSGRCIAVALVDKTKLVSSWID-----------------DGTGNYLNGTSEYTGHYIVICGF-DAGT----------NEFEIRDPACSRKYEKVTMECLDEARKSFGTDEDILLVSL 246          
BLAST of jgi.p|Trimin1|175446 vs. uniprot
Match: A0A836C1L5_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C1L5_9CHLO)

HSP 1 Score: 119 bits (298), Expect = 3.600e-28
Identity = 79/230 (34.35%), Postives = 114/230 (49.57%), Query Frame = 1
Query:  109 HQKQLSTWDCGVACLMMVLSSLNRDHTRDTLLAAL-GTNSVWTIDLALILHEHGICFHFLTRSTGVSPAYKGIAFYRSQFDADAARVTRRFREARRRNLAVGVGSLEIADIRRLVELDACAVLVLVDARHLPHHFKSAAASAAAVAGSGATAAAPNAGALPPAQASYRGHYVLLLGYADDGEGXXXXXXXXXGAFVARDPAVPEEHVLIAATVLDAARRSFGTDEDMLVI 795
            H KQ  +WDCG+AC+ M+L +         +L  L  T S+WT+DLA +L   G+   F T + G +PAY    FY    + D  RV+R F EA    +AV   S+   +++  +    C V+ LVD R L     +A     A+ G                +  Y GHY+LL+G+    +            +V RDPA  E  + ++A+ LDAARRSFGTDED+LV+
Sbjct:   83 HCKQYFSWDCGLACVQMILQACGYSQCDYRVLRQLCTTTSIWTVDLAHLLRRFGLRVCFYTVTLGPNPAYANETFYMENMEDDERRVSRLFVEAEVAGIAVQQRSVSSQELQAWLMSGCCLVVALVDKRKLDPWLGAADMCLPALCGM---------------ELGYTGHYLLLVGFQAATQ-----------EYVVRDPAASEPDLRVSASALDAARRSFGTDEDLLVV 286          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175446 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZG64_9STRA1.270e-173100.00Guanylyl cyclase (Fragment) n=1 Tax=Tribonema minu... [more]
D8LB31_ECTSI1.090e-3436.58Chromosome 22 open reading frame 13, isoform CRA_c... [more]
A0A199VJD8_ANACO6.500e-3133.19Protein GUCD1 n=3 Tax=Ananas comosus TaxID=4615 Re... [more]
A0A2K3DBN7_CHLRE1.090e-2935.04Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A7S0RZ62_9CHLO4.660e-2937.08Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A0A0K8F6_CUCSA5.390e-2933.76Uncharacterized protein n=3 Tax=Benincaseae TaxID=... [more]
A0A7S2W2S7_9STRA1.280e-2833.05Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A250XKN1_9CHLO1.690e-2832.23Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A833R9Z0_9POAL2.550e-2832.33Protein GUCD1 isoform X1 n=1 Tax=Carex littledalei... [more]
A0A836C1L5_9CHLO3.600e-2834.35Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_125contigContig_125:356468..357268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175446|e_gw1.125.5.1
BRITEko00000,ko00001,ko00002,ko01000,ko04131
KEGG rclassRC00002,RC00078,RC02809,RC02889
KEGG ReactionR00509,R00529,R04928,R04929
KEGG ModuleM00176
KEGG Pathwayko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130
KEGG koko:K13811,ko:K21852
EC2.7.1.25,2.7.7.4
Preferred nameGUCD1
DescriptionGuanylylate cyclase
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4621@1|root,KOG4621@2759|Eukaryota
Evalue1.79e-35
Seed ortholog2880.D8LB31
Hectar predicted targeting categoryother localisation
TranscriptId175768
TrackFilteredModels1
ProteinId175446
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175446gene_14172Tribonema minus UTEX_B_3156 geneContig_125 356468..357268 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14172_1exon_14172_1Tribonema minus UTEX_B_3156 exonContig_125 356468..357268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14172CDS_14172Tribonema minus UTEX_B_3156 CDSContig_125 356468..357268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175446Trimin1|175446|e_gw1.125.5.1Tribonema minus UTEX_B_3156 polypeptideContig_125 356468..357268 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14172 ID=mRNA_14172|Name=jgi.p|Trimin1|175446|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=801bp|location=Sequence derived from alignment at Contig_125:356468..357268+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACAGGAAGCGGCGGCATCAGCTACACAAGCCTTATCTACTGCTGC
CACAGAAAGCGGGCCCAGCGTTTCTGGCGAATTTCTGCCTGGCCTGCACA
AGCTGGGCCATCAGAAACAGCTGTCAACATGGGATTGTGGAGTAGCCTGC
CTCATGATGGTGCTGTCGAGCCTCAACAGAGACCACACCAGAGACACACT
GCTGGCTGCCCTTGGCACCAACAGTGTCTGGACGATAGACCTCGCGCTCA
TCCTGCACGAGCACGGCATCTGCTTCCACTTCCTCACCCGCAGCACCGGC
GTGTCTCCCGCCTACAAAGGCATAGCCTTCTATCGCAGCCAATTTGACGC
TGACGCAGCGCGAGTGACGCGCCGCTTCAGAGAAGCGCGGCGTCGCAACC
TCGCAGTAGGCGTTGGCTCGCTCGAAATCGCCGACATCCGGCGCCTGGTG
GAGCTCGACGCATGCGCAGTACTCGTACTGGTCGACGCGCGTCACCTCCC
CCACCACTTCAAGTCCGCAGCGGCGTCCGCCGCCGCCGTTGCGGGCTCAG
GCGCCACCGCTGCCGCGCCCAATGCAGGCGCGCTGCCGCCCGCGCAAGCC
TCGTACAGGGGCCACTACGTCCTGCTGCTGGGCTACGCTGACGACGGCGA
AGGAGGCGACGGCGGCGGCGGCGGTGTCGGCGGCGCATTCGTGGCGCGCG
ACCCCGCGGTGCCCGAGGAACACGTGCTGATCGCTGCCACGGTACTGGAC
GCAGCGCGGCGCAGCTTCGGGACAGACGAGGATATGCTTGTCATCGACCT
G
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protein sequence of jgi.p|Trimin1|175446

>Trimin1|175446|e_gw1.125.5.1 ID=Trimin1|175446|e_gw1.125.5.1|Name=jgi.p|Trimin1|175446|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=267bp
MPQEAAASATQALSTAATESGPSVSGEFLPGLHKLGHQKQLSTWDCGVAC
LMMVLSSLNRDHTRDTLLAALGTNSVWTIDLALILHEHGICFHFLTRSTG
VSPAYKGIAFYRSQFDADAARVTRRFREARRRNLAVGVGSLEIADIRRLV
ELDACAVLVLVDARHLPHHFKSAAASAAAVAGSGATAAAPNAGALPPAQA
SYRGHYVLLLGYADDGEGGDGGGGGVGGAFVARDPAVPEEHVLIAATVLD
AARRSFGTDEDMLVIDL
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mRNA from alignment at Contig_125:356468..357268+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14172 ID=mRNA_14172|Name=jgi.p|Trimin1|175446|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=801bp|location=Sequence derived from alignment at Contig_125:356468..357268+ (Tribonema minus UTEX_B_3156 )
ATGCCACAGGAAGCGGCGGCATCAGCTACACAAGCCTTATCTACTGCTGC CACAGAAAGCGGGCCCAGCGTTTCTGGCGAATTTCTGCCTGGCCTGCACA AGCTGGGCCATCAGAAACAGCTGTCAACATGGGATTGTGGAGTAGCCTGC CTCATGATGGTGCTGTCGAGCCTCAACAGAGACCACACCAGAGACACACT GCTGGCTGCCCTTGGCACCAACAGTGTCTGGACGATAGACCTCGCGCTCA TCCTGCACGAGCACGGCATCTGCTTCCACTTCCTCACCCGCAGCACCGGC GTGTCTCCCGCCTACAAAGGCATAGCCTTCTATCGCAGCCAATTTGACGC TGACGCAGCGCGAGTGACGCGCCGCTTCAGAGAAGCGCGGCGTCGCAACC TCGCAGTAGGCGTTGGCTCGCTCGAAATCGCCGACATCCGGCGCCTGGTG GAGCTCGACGCATGCGCAGTACTCGTACTGGTCGACGCGCGTCACCTCCC CCACCACTTCAAGTCCGCAGCGGCGTCCGCCGCCGCCGTTGCGGGCTCAG GCGCCACCGCTGCCGCGCCCAATGCAGGCGCGCTGCCGCCCGCGCAAGCC TCGTACAGGGGCCACTACGTCCTGCTGCTGGGCTACGCTGACGACGGCGA AGGAGGCGACGGCGGCGGCGGCGGTGTCGGCGGCGCATTCGTGGCGCGCG ACCCCGCGGTGCCCGAGGAACACGTGCTGATCGCTGCCACGGTACTGGAC GCAGCGCGGCGCAGCTTCGGGACAGACGAGGATATGCTTGTCATCGACCT G
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Coding sequence (CDS) from alignment at Contig_125:356468..357268+

>mRNA_14172 ID=mRNA_14172|Name=jgi.p|Trimin1|175446|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=801bp|location=Sequence derived from alignment at Contig_125:356468..357268+ (Tribonema minus UTEX_B_3156 )
ATGCCACAGGAAGCGGCGGCATCAGCTACACAAGCCTTATCTACTGCTGC
CACAGAAAGCGGGCCCAGCGTTTCTGGCGAATTTCTGCCTGGCCTGCACA
AGCTGGGCCATCAGAAACAGCTGTCAACATGGGATTGTGGAGTAGCCTGC
CTCATGATGGTGCTGTCGAGCCTCAACAGAGACCACACCAGAGACACACT
GCTGGCTGCCCTTGGCACCAACAGTGTCTGGACGATAGACCTCGCGCTCA
TCCTGCACGAGCACGGCATCTGCTTCCACTTCCTCACCCGCAGCACCGGC
GTGTCTCCCGCCTACAAAGGCATAGCCTTCTATCGCAGCCAATTTGACGC
TGACGCAGCGCGAGTGACGCGCCGCTTCAGAGAAGCGCGGCGTCGCAACC
TCGCAGTAGGCGTTGGCTCGCTCGAAATCGCCGACATCCGGCGCCTGGTG
GAGCTCGACGCATGCGCAGTACTCGTACTGGTCGACGCGCGTCACCTCCC
CCACCACTTCAAGTCCGCAGCGGCGTCCGCCGCCGCCGTTGCGGGCTCAG
GCGCCACCGCTGCCGCGCCCAATGCAGGCGCGCTGCCGCCCGCGCAAGCC
TCGTACAGGGGCCACTACGTCCTGCTGCTGGGCTACGCTGACGACGGCGA
AGGAGGCGACGGCGGCGGCGGCGGTGTCGGCGGCGCATTCGTGGCGCGCG
ACCCCGCGGTGCCCGAGGAACACGTGCTGATCGCTGCCACGGTACTGGAC
GCAGCGCGGCGCAGCTTCGGGACAGACGAGGATATGCTTGTCATCGACCT
G
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