mRNA_14479 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175303
Unique NamemRNA_14479
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|175303 vs. uniprot
Match: A0A835ZBM8_9STRA (Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBM8_9STRA)

HSP 1 Score: 571 bits (1471), Expect = 7.670e-206
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 1 
Query:    1 MGNRSPYERAKSIWDTAENLDYIFDSNKRWVQDCLEEDPEIFTRLKYAQAPKYLYIGCSDSRVPAQNMLGLTTGELFVHRNVANLCVNTDYSLLSVLTYAVEVLEVTDIIVCGHYGCGGVRAAMENKDHGLLEHWLMHIRNVQRLHQAELAEIPNEEERHQRLVELNVQEACMNLFANPVVQKKQATDAQPRIHGWVYDIGSGLLKDLKIDFRTEIRKYKNIYSLYEFPKSTIAGASAPVAPNGRMTPLKKVPQEALAAAADSSSSQAQSSGNLWNRLQRILP 849
            MGNRSPYERAKSIWDTAENLDYIFDSNKRWVQDCLEEDPEIFTRLKYAQAPKYLYIGCSDSRVPAQNMLGLTTGELFVHRNVANLCVNTDYSLLSVLTYAVEVLEVTDIIVCGHYGCGGVRAAMENKDHGLLEHWLMHIRNVQRLHQAELAEIPNEEERHQRLVELNVQEACMNLFANPVVQKKQATDAQPRIHGWVYDIGSGLLKDLKIDFRTEIRKYKNIYSLYEFPKSTIAGASAPVAPNGRMTPLKKVPQEALAAAADSSSSQAQSSGNLWNRLQRILP
Sbjct:    1 MGNRSPYERAKSIWDTAENLDYIFDSNKRWVQDCLEEDPEIFTRLKYAQAPKYLYIGCSDSRVPAQNMLGLTTGELFVHRNVANLCVNTDYSLLSVLTYAVEVLEVTDIIVCGHYGCGGVRAAMENKDHGLLEHWLMHIRNVQRLHQAELAEIPNEEERHQRLVELNVQEACMNLFANPVVQKKQATDAQPRIHGWVYDIGSGLLKDLKIDFRTEIRKYKNIYSLYEFPKSTIAGASAPVAPNGRMTPLKKVPQEALAAAADSSSSQAQSSGNLWNRLQRILP 283
[Close]
BLAST of jgi.p|Trimin1|175303 vs. uniprot
Match: H6WB75_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB75_VAULI)

HSP 1 Score: 355 bits (910), Expect = 5.070e-120
Identity = 162/222 (72.97%), Postives = 201/222 (90.54%), Query Frame = 1 
Query:   22 ERAKSIWDTAENLDYIFDSNKRWVQDCLEEDPEIFTRLKYAQAPKYLYIGCSDSRVPAQNMLGLTTGELFVHRNVANLCVNTDYSLLSVLTYAVEVLEVTDIIVCGHYGCGGVRAAMENKDHGLLEHWLMHIRNVQRLHQAELAEIPNEEERHQRLVELNVQEACMNLFANPVVQKKQATDAQPRIHGWVYDIGSGLLKDLKIDFRTEIRKYKNIYSLYEFP 687
            E++KSIW     L+++F++NK+WV++ +E+DPE+FTRLK AQ PKYLYIGCSDSRVPAQNMLGL  GELFV RNVANLC+N+D+SLLSVL +++EVLEVTD+IVCGHYGCGGV AAM+NKDHGLLEHWL HIRNVQRLH++EL +IP+E +R +RLVELNVQE+C+NLF+NP+VQKKQAT +QPRIHGWVYDI +G +KDLKIDF+TEI+KY++IY LY+FP
Sbjct:   42 EKSKSIWSLDSPLEHLFENNKKWVRESVEKDPEVFTRLKDAQQPKYLYIGCSDSRVPAQNMLGLQAGELFVIRNVANLCINSDFSLLSVLLFSIEVLEVTDVIVCGHYGCGGVNAAMKNKDHGLLEHWLHHIRNVQRLHKSELVQIPDESQRFKRLVELNVQESCLNLFSNPIVQKKQATASQPRIHGWVYDIATGYVKDLKIDFKTEIKKYRDIYRLYDFP 263
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BLAST of jgi.p|Trimin1|175303 vs. uniprot
Match: A0A1W6IYH0_SACJA (Carbonic anhydrase n=2 Tax=Saccharina japonica TaxID=88149 RepID=A0A1W6IYH0_SACJA)

HSP 1 Score: 345 bits (886), Expect = 2.660e-116
Identity = 168/239 (70.29%), Postives = 202/239 (84.52%), Query Frame = 1 
Query:   10 RSPYERAKSIWDTAE-NLDYIFDSNKRWVQDCLEEDPEIFTRLKYAQAPKYLYIGCSDSRVPAQNMLGLTTGELFVHRNVANLCVNTDYSLLSVLTYAVEVLEVTDIIVCGHYGCGGVRAAMENKDHGLLEHWLMHIRNVQRLHQAELAEIPNEEERHQRLVELNVQEACMNLFANPVVQKKQATDAQPRIHGWVYDIGSGLLKDLKIDFRTEIRKYKNIYSLYEFPK--STIAGASAP 717
            +  Y+R K++ D  + ++DYIF +N+ WV+  + EDP+ F RL  +Q PKYLYIGCSDSRVPAQNM+GLTTGELFV RNVANLCVNTD+SLL+ LTYAV VLEVTDIIVCGHYGCGGVRAAMEN DHGLLEHWL++IRNVQRLH  EL  IP+ +ERH+RLVELNVQE+C+NLFANP+VQKKQAT +QP+IHGWVYD+ +GLLK L IDF++EIRKY+++Y LYEFP+  ST   A AP
Sbjct:   66 KGAYDRMKAMLDNDDGSMDYIFQNNRDWVEGTISEDPDTFKRLATSQQPKYLYIGCSDSRVPAQNMMGLTTGELFVVRNVANLCVNTDHSLLAALTYAVNVLEVTDIIVCGHYGCGGVRAAMENVDHGLLEHWLLNIRNVQRLHLDELKTIPDVDERHKRLVELNVQESCINLFANPIVQKKQATSSQPKIHGWVYDVATGLLKKLDIDFKSEIRKYQDVYRLYEFPRRNSTSNEAMAP 304
[Close]
BLAST of jgi.p|Trimin1|175303 vs. uniprot
Match: D8LR72_ECTSI (Carbonic anhydrase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR72_ECTSI)

HSP 1 Score: 330 bits (847), Expect = 5.820e-110
Identity = 158/245 (64.49%), Postives = 197/245 (80.41%), Query Frame = 1 
Query:   19 YERAKSIWDTAENLDYIFDSNKRWVQDCLEEDPEIFTRLKYAQAPKYLYIGCSDSRVPAQNMLGLTTGELFVHRNVANLCVNTDYSLLSVLTYAVEVLEVTDIIVCGHYGCGGVRAAMENKDHGLLEHWLMHIRNVQRLHQAELAEIPNEEERHQRLVELNVQEACMNLFANPVVQKKQATDAQPRIHGWVYDIGSGLLKDLKIDFRTEIRKYKNIYSLYEFPKSTIAGASAPVAPNGRMTPLKK 753
            YER + +++   + DYIF +N+ WV++ L +DP+ F RL  +Q P+Y+YIGCSDSRVPAQNM+GL TGELFV RNVANLCVNTD+SLL+ L YAV VLEVTDIIVCGHYGCGGVRAAMEN DHGLLEHWL++IRNV RLH  EL  I + +E+ +RLVELNVQE+C+NLFANP+VQKKQAT + P+IHGW YD+G+GLLK+L IDF+ EIRKY+++Y LYEFP+   +   A    NG M P ++
Sbjct:   75 YERLQQMYENDGSTDYIFANNRAWVEERLAQDPDTFKRLANSQKPRYMYIGCSDSRVPAQNMMGLNTGELFVVRNVANLCVNTDHSLLAALAYAVNVLEVTDIIVCGHYGCGGVRAAMENIDHGLLEHWLLNIRNVVRLHNEELQGISDMDEKSRRLVELNVQESCINLFANPIVQKKQATHSMPKIHGWAYDVGNGLLKELDIDFKAEIRKYRDVYRLYEFPRRPPSHNGA----NGSMVPRRR 315
[Close]
BLAST of jgi.p|Trimin1|175303 vs. uniprot
Match: A0A7S2XTK6_9STRA (Carbonic anhydrase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTK6_9STRA)

HSP 1 Score: 283 bits (725), Expect = 1.200e-92
Identity = 137/220 (62.27%), Postives = 176/220 (80.00%), Query Frame = 1 
Query:   34 SIWDTAENLDYIFDSNKRWVQDCLEEDPEIFTRLKYAQAPKYLYIGCSDSRVPAQNMLGLTTGELFVHRNVANLCVNTDYSLLSVLTYAVEVLEVTDIIVCGHYGCGGVRAAME-NKDHGLLEHWLMHIRNVQRLHQAELAEIPNEEERHQRLVELNVQEACMNLFANPVVQKKQATDAQPRIHGWVYDIGSGLLKDLKIDFRTEIRKYKNIYSLYEFPK 690
            SIWD ++    IF++NK+WV   LEEDP+ F +LK  Q P+YL+IGCSDSRVPA  ++GL+ G++FVHRNVANL VN D +LLSVL Y+VEVL+V D+IVCGHYGCGGV+AA     DHGLLEHWL +I++V R+HQ EL  I +EE+RH+RLVEL+VQE C+NLFANP+VQ+ Q T   PRIHG+VYDIG+G L++L+IDF+ E+ K K+IYS Y+F K
Sbjct:   35 SIWDKSD-FQQIFENNKKWVHKHLEEDPDYFKKLKMGQKPRYLFIGCSDSRVPANEIMGLSAGDVFVHRNVANLVVNGDMNLLSVLQYSVEVLKVRDVIVCGHYGCGGVKAASTIGTDHGLLEHWLRNIKDVIRVHQDELNTIEDEEKRHERLVELSVQEQCINLFANPIVQRSQVTHGYPRIHGFVYDIGNGYLRELEIDFKKEVSKLKDIYSHYDFSK 253
[Close]
BLAST of jgi.p|Trimin1|175303 vs. uniprot
Match: A0A6S9IM72_HETAK (Carbonic anhydrase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IM72_HETAK)

HSP 1 Score: 269 bits (687), Expect = 4.980e-87
Identity = 128/210 (60.95%), Postives = 162/210 (77.14%), Query Frame = 1 
Query:   55 NLDYIFDSNKRWVQDCLEEDPEIFTRLKYAQAPKYLYIGCSDSRVPAQNMLGLTTGELFVHRNVANLCVNTDYSLLSVLTYAVEVLEVTDIIVCGHYGCGGVRAAMENKDHGLLEHWLMHIRNVQRLHQAELAEIPNEEERHQRLVELNVQEACMNLFANPVVQKKQATDAQPRIHGWVYDIGSGLLKDLKIDFRTEIRKYKNIYSLYEF 684
            + + +F++N++WV +  + DP+ F  L   Q+PKYL+IGC+DSR+PAQ +LGL  GELFVHRNVANL VN D +LL+VL Y+VEVL+V DIIVCGHY CGG++AA  N DHGL+EHWL +IR++ RLH  EL  I  EE RH+RLVELNVQE C+NL+ANP+VQK Q   + PRIHG+VYDI  GL+K+L IDF+ EI K K  YSLY F
Sbjct:   38 SFEQLFENNRKWVAEQKKNDPDYFKNLAKGQSPKYLFIGCADSRIPAQEVLGLKCGELFVHRNVANLVVNGDMNLLAVLQYSVEVLKVEDIIVCGHYECGGIKAACANHDHGLVEHWLRNIRDINRLHAEELEAIECEEARHRRLVELNVQEQCINLYANPIVQKAQLATSLPRIHGFVYDIAEGLVKELPIDFKAEISKIKQHYSLYNF 247
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BLAST of jgi.p|Trimin1|175303 vs. uniprot
Match: A0A7S1N9X7_9EUGL (Carbonic anhydrase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N9X7_9EUGL)

HSP 1 Score: 273 bits (697), Expect = 6.440e-87
Identity = 132/226 (58.41%), Postives = 169/226 (74.78%), Query Frame = 1 
Query:    7 NRSPYERAKSIWDTAENLDYIFDSNKRWVQDCLEEDPEIFTRLKYAQAPKYLYIGCSDSRVPAQNMLGLTTGELFVHRNVANLCVNTDYSLLSVLTYAVEVLEVTDIIVCGHYGCGGVRAAMENKDHGLLEHWLMHIRNVQRLHQAELAEIPNEEERHQRLVELNVQEACMNLFANPVVQKKQATDAQPRIHGWVYDIGSGLLKDLKIDFRTEIRKYKNIYSLYEF 684
            NRSP++         ENL+ IF++N++W +   + DP  F RLK  Q PKYL+IGC+DSR+PAQ ++G+  GE+FVHRNVANL VN D +LLSV+ YAVEVL V DIIVCGHY CGGVRAA  NKDHGL+EHW+ +IR+V RLH+ ELA +  E  RH+RLVELNVQE C+NLFANP++Q++QA    PRIHG VYD+G GLL+ L +DF+  IR+ ++IY    F
Sbjct:  125 NRSPFDD--------ENLETIFENNRKWAEQMRKTDPNFFKRLKQGQEPKYLFIGCADSRIPAQELMGMKAGEMFVHRNVANLVVNNDLNLLSVIAYAVEVLHVKDIIVCGHYECGGVRAAESNKDHGLVEHWIRNIRDVVRLHRNELAVLTGEM-RHRRLVELNVQEQCINLFANPIIQRRQAAHGLPRIHGMVYDVGEGLLRKLDLDFKHSIREMRHIYDTGHF 341
[Close]
BLAST of jgi.p|Trimin1|175303 vs. uniprot
Match: A0A5D6Y1G5_9STRA (Carbonic anhydrase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1G5_9STRA)

HSP 1 Score: 249 bits (636), Expect = 2.560e-77
Identity = 123/223 (55.16%), Postives = 160/223 (71.75%), Query Frame = 1 
Query:   49 AENLDYIFDSNKRWVQDCLEEDPEIFTRLKYAQAPKYLYIGCSDSRVPAQNMLGLTTGELFVHRNVANLCVNTDYSLLSVLTYAVEVLEVTDIIVCGHYGCGGVRAAMENKDHGLLEHWLMHIRNVQRLHQAELAEIPNEEERHQRLVELNVQEACMNLFANPVVQKKQATDAQPRIHGWVYDIGSGLLKDLKIDFRTEIRKYKNIYSLYEFPKSTIAGASAP 717
            A ++ ++FD+NKRW +     D + F R      P+YL+IGCSDSRVPA+ + GL  GE+FVHRNVANL V+ D S L+V+ +AVE L V DIIVCGHYGCGGVRAAM N+  GLL+HWL +IR+V RL+Q+EL EIPNE +R +R+VELN+ E C+N+F   +VQ+ Q     PRIHG VYDI SG+LK L++DFR+ ++KY  IY L+ F KS   G   P
Sbjct:   78 ASSIQHLFDNNKRWREKKQRSDADFFERTARKHEPRYLWIGCSDSRVPAEKITGLAPGEMFVHRNVANLVVSNDVSSLAVVQFAVEQLRVRDIIVCGHYGCGGVRAAMANEQLGLLDHWLRNIRDVCRLNQSELLEIPNETQRFRRIVELNITEQCLNIFKINMVQRNQQKYGFPRIHGLVYDIESGVLKPLEVDFRSYVQKYSRIYRLHSFSKSGFQGDDYP 300
[Close]
BLAST of jgi.p|Trimin1|175303 vs. uniprot
Match: A0A835YJA7_9STRA (Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJA7_9STRA)

HSP 1 Score: 243 bits (621), Expect = 2.650e-77
Identity = 113/206 (54.85%), Postives = 152/206 (73.79%), Query Frame = 1 
Query:   67 IFDSNKRWVQDCLEEDPEIFTRLKYAQAPKYLYIGCSDSRVPAQNMLGLTTGELFVHRNVANLCVNTDYSLLSVLTYAVEVLEVTDIIVCGHYGCGGVRAAMENKDHGLLEHWLMHIRNVQRLHQAELAEIPNEEERHQRLVELNVQEACMNLFANPVVQKKQATDAQPRIHGWVYDIGSGLLKDLKIDFRTEIRKYKNIYSLYEF 684
            + D+N+RWV+  L EDP+ F        P+YL+IGCSD+R+  QNMLGL  G+LFVHRNVAN  VNTD + ++ LTYAVE L+V +II+CGHY CGGV+AAM N DHG++E W+M IR+V R H+ EL  I + +  H+R+VELNVQE  + L+ANPVVQ+ QA   +P IH  V+D+G GLLK+L +DF+  I+KY ++YS+Y F
Sbjct:    2 LLDNNRRWVERKLTEDPDFFKNQLSVHKPEYLFIGCSDARLSVQNMLGLEMGQLFVHRNVANQVVNTDLNFITCLTYAVEYLKVENIIICGHYDCGGVKAAMRNHDHGIIEQWIMGIRDVARYHRKELRAIKDPDLVHRRMVELNVQEQALKLYANPVVQRSQAQGGKPHIHALVFDVGEGLLKELDVDFKKIIKKYSHVYSMYNF 207
[Close]
BLAST of jgi.p|Trimin1|175303 vs. uniprot
Match: A0A662WWC2_9STRA (Carbonic anhydrase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WWC2_9STRA)

HSP 1 Score: 246 bits (628), Expect = 3.080e-77
Identity = 115/213 (53.99%), Postives = 160/213 (75.12%), Query Frame = 1 
Query:   49 AENLDYIFDSNKRWVQDCLEEDPEIFTRLKYAQAPKYLYIGCSDSRVPAQNMLGLTTGELFVHRNVANLCVNTDYSLLSVLTYAVEVLEVTDIIVCGHYGCGGVRAAMENKDHGLLEHWLMHIRNVQRLHQAELAEIPNEEERHQRLVELNVQEACMNLFANPVVQKKQATDAQPRIHGWVYDIGSGLLKDLKIDFRTEIRKYKNIYSLYEFP 687
            A ++ ++FD+NK+W +  ++ DP  F R+   Q P+YL+IGCSDSRVPA+ + GL  GE+FVHRNVANL V+ D + LSV+ +AVE L+V DIIVCGHYGCGGV+AAM+NK  GLL++WL +IR+V RLH+ EL  +P +E R++RLVELN+QE C+N+F   +VQ++Q     P IHG VYDI +G LK+L++D+R  I K+  +Y L+ FP
Sbjct:   13 ATSIQHLFDNNKKWRETMVQRDPTFFERMAVGQTPRYLWIGCSDSRVPAEEVSGLNPGEVFVHRNVANLVVSNDINALSVVQFAVEKLKVKDIIVCGHYGCGGVKAAMKNKQIGLLDNWLRNIRDVCRLHKDELVALPTQEARYRRLVELNIQEQCLNIFKINMVQRRQGRYGHPHIHGLVYDINTGALKELEVDYREYIAKHIGVYRLHTFP 225
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175303 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBM8_9STRA7.670e-206100.00Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=3... [more]
H6WB75_VAULI5.070e-12072.97Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
A0A1W6IYH0_SACJA2.660e-11670.29Carbonic anhydrase n=2 Tax=Saccharina japonica Tax... [more]
D8LR72_ECTSI5.820e-11064.49Carbonic anhydrase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S2XTK6_9STRA1.200e-9262.27Carbonic anhydrase n=1 Tax=Fibrocapsa japonica Tax... [more]
A0A6S9IM72_HETAK4.980e-8760.95Carbonic anhydrase n=1 Tax=Heterosigma akashiwo Ta... [more]
A0A7S1N9X7_9EUGL6.440e-8758.41Carbonic anhydrase n=1 Tax=Eutreptiella gymnastica... [more]
A0A5D6Y1G5_9STRA2.560e-7755.16Carbonic anhydrase n=1 Tax=Pythium brassicum TaxID... [more]
A0A835YJA7_9STRA2.650e-7754.85Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A662WWC2_9STRA3.080e-7753.99Carbonic anhydrase n=2 Tax=Nothophytophthora sp. C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_123contigContig_123:105665..111012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175303|e_gw1.123.87.1
BRITEko00000,ko00001,ko01000
KEGG rclassRC02807
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
KEGG koko:K01673
EC4.2.1.1
Descriptioncarbonate dehydratase activity
COG categoryP
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0288@1|root,KOG1578@2759|Eukaryota
Evalue9.54e-111
Seed ortholog2880.D8LR72
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncarbonic anhydrase
Ec32 orthologEc-06_004120.1
TranscriptId175625
TrackFilteredModels1
ProteinId175303
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175303gene_14479Tribonema minus UTEX_B_3156 geneContig_123 105665..111012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175303Trimin1|175303|e_gw1.123.87.1Tribonema minus UTEX_B_3156 polypeptideContig_123 105665..111012 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14479_5exon_14479_5Tribonema minus UTEX_B_3156 exonContig_123 105665..105961 -
exon_14479_4exon_14479_4Tribonema minus UTEX_B_3156 exonContig_123 107311..107477 -
exon_14479_3exon_14479_3Tribonema minus UTEX_B_3156 exonContig_123 108877..108949 -
exon_14479_2exon_14479_2Tribonema minus UTEX_B_3156 exonContig_123 109803..109970 -
exon_14479_1exon_14479_1Tribonema minus UTEX_B_3156 exonContig_123 110866..111012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14479CDS_14479Tribonema minus UTEX_B_3156 CDSContig_123 110866..111012 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14479 ID=mRNA_14479|Name=jgi.p|Trimin1|175303|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=852bp|location=Sequence derived from alignment at Contig_123:105665..111012- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAACAGGAGCCCGTACGAGCGAGCGAAGAGCATCTGGGACACGGC
GGAAAACCTTGACTACATATTCGACAGCAACAAGCGCTGGGTGCAAGACT
GCTTGGAGGAGGATCCTGAAATTTTCACAAGGCTGAAGTACGCACAGGCA
CCCAAGTACCTGTACATCGGCTGCAGCGACAGCCGCGTGCCCGCTCAGAA
CATGCTTGGGCTGACGACGGGAGAGCTGTTTGTGCACCGCAACGTGGCCA
ACCTCTGCGTCAACACGGACTACTCGCTGCTGTCAGTGCTCACGTACGCA
GTGGAGGTTCTTGAGGTGACGGACATCATTGTGTGCGGACACTATGGCTG
CGGTGGAGTGAGGGCTGCTATGGAGAACAAGGACCACGGTCTGCTTGAGC
ACTGGCTCATGCACATCCGCAACGTGCAGCGGTTGCACCAGGCAGAGCTC
GCGGAGATTCCCAATGAAGAGGAGCGTCACCAGCGCCTAGTTGAACTTAA
TGTTCAAGAGGCCTGCATGAACCTGTTTGCCAACCCTGTCGTGCAGAAGA
AGCAGGCCACGGATGCTCAACCTCGCATCCACGGCTGGGTCTACGACATC
GGCAGCGGCCTGCTTAAGGACTTGAAGATTGACTTTCGCACAGAGATCCG
CAAGTACAAGAACATCTACAGCCTCTACGAGTTCCCGAAATCCACCATTG
CAGGGGCCTCTGCACCGGTTGCACCGAATGGCCGCATGACCCCTCTGAAG
AAGGTTCCTCAGGAGGCGCTGGCGGCTGCTGCGGATAGTTCTTCGTCCCA
GGCACAGTCCTCGGGGAACCTCTGGAACCGTTTGCAGAGGATCCTTCCTT
GA
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protein sequence of jgi.p|Trimin1|175303

>Trimin1|175303|e_gw1.123.87.1 ID=Trimin1|175303|e_gw1.123.87.1|Name=jgi.p|Trimin1|175303|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=284bp
MGNRSPYERAKSIWDTAENLDYIFDSNKRWVQDCLEEDPEIFTRLKYAQA
PKYLYIGCSDSRVPAQNMLGLTTGELFVHRNVANLCVNTDYSLLSVLTYA
VEVLEVTDIIVCGHYGCGGVRAAMENKDHGLLEHWLMHIRNVQRLHQAEL
AEIPNEEERHQRLVELNVQEACMNLFANPVVQKKQATDAQPRIHGWVYDI
GSGLLKDLKIDFRTEIRKYKNIYSLYEFPKSTIAGASAPVAPNGRMTPLK
KVPQEALAAAADSSSSQAQSSGNLWNRLQRILP*
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mRNA from alignment at Contig_123:105665..111012-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14479 ID=mRNA_14479|Name=jgi.p|Trimin1|175303|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5348bp|location=Sequence derived from alignment at Contig_123:105665..111012- (Tribonema minus UTEX_B_3156 )
ATGGGCAACAGGAGCCCGTACGAGCGAGCGAAGAGCATCTGGGACACGGC
GGAAAACCTTGACTACATATTCGACAGCAACAAGCGCTGGGTGCAAGACT
GCTTGGAGGAGGATCCTGAAATTTTCACAAGGCTGAAGTACGCACAGGTG
CGCCACCGCAACCAGTAGCAGTCGTTTTGGTTATATATATTCAGCAGTAA
CGGTAGCAACTTGAGCACCCTCTGACTATAATCCGGAGGTAATAGCTGAA
ACGTGTGCTGTTCATGTGTCTGCGCTCGTTTGTTGGGTCGAGGGCGTCAA
CACGTCAGCTGAGGGCATCGGCGGCAGAGCAATGCAGCAGTTGCAGTGCA
GTGACTGCAGTAGCAGCTGATCCACATGCGATCAGCAGCTCAATCCGCTG
CTGCTGTCACCCTTTCATTGGCTTTTGTGATGTGTTACAGCATGTTGATG
TCAAGGAGCATGTTCAACATGGCAGTGCGTGAGTTGAGACACAGCCGCCT
TTAGTGAACTACATAAAAATTCATGCAGACTGTACTGTCAGATGCATTTC
GGAACTATGAGGACCGCAATCGGTTACAGAACAACTGCACCTTTCGACTG
CCCGGGCTTCCGTGTCAGCATCTTTTTCATGACGCGTCACGAGCAAGTTG
CAGTAGTCAACAGTGGCAATATCATCAAGGCGTTTGGGCTACTAGCAAGA
GCCACAATTGCACCTCCATTGAACCCGCTCTACTGCCTAAGTTCACTACC
ATCGCTGCTGTCTCCTGCAGTTCCCCATGCCACTCCGTGCCAACATCACT
TCGGTCCGCAACTGATTCATGCCTCGGCCAGCGTCACATTATTATGATCC
AACACCCCTGAACCTGTTTTTCATCCCAGTGCGAATGAAGCCCTGCGTTG
CATGCCTCAAACCACGTGTCGTACGACGTGCATCAAACGTTAAATGCTTG
CCTAGCACTATTTGAGTTCTGTAATTGACAAACAACAAGCGTGCATCGCA
TTGATGCCAAATGCCATGCCTTTTTCCGTGTAACTCTCACAGGCACCCAA
GTACCTGTACATCGGCTGCAGCGACAGCCGCGTGCCCGCTCAGAACATGC
TTGGGCTGACGACGGGAGAGCTGTTTGTGCACCGCAACGTGGCCAACCTC
TGCGTCAACACGGACTACTCGCTGCTGTCAGTGCTCACGTACGCAGTGGA
GGTTCTTGAGGTACGCACTTTACCTTAATATCTGCAACGTGGCCAACCTC
TGCGTCAACACGGACTTTTCGCTGCTGTCAGTGCTCACGTACGCGGTGGA
GGTTCTTGAGGCACAAACTTCACTTGAATATAGTATACACGCGTAGTGGA
GCTTCTCAATGAATGTATTTGGCAATGCTATTTGCAAGTTTACCCGAGGC
CTGATTGATGTACTCTACATGGTCTGTACCATCGTGCGCCTCTTCAGGCC
GACTGAGTTTACCGAGGGCGGCATGAAAATAGAGACGGCATTTTTTTACC
AAGTGTCACTGCTGATGATGGTCCAGCCATTCATCGGCAGGTCCGAATGC
GATTGCCATTGCAAGGGCCCAGCAACGGGTAGCTGGGCAGGTGACGCGCC
GTCGCGGCAACGGCGGTTGGAGTCGTGGCAACGGCGTTGGAGCGCGGGCT
TGTGGTTGCTCTTGGTGTGGCACTGGCAGCCAGCACGCGCAGCATCAATA
TGTTGCACGTTTAATGGTCGGAGCTGCAGATGTGTGTACTTGTGTATCTT
CATCTTACAATGGGTATTAGATGCTTACCATGGGTATTAGATTCTGGGAT
GTGTGTCCGGCTGCTTTCTGCCCGTTGCTCGGCGCGTTCACACAAATGAC
ACACCTGATTATTGCCAATGTTTTCCTTTCTCTGTCTATTTCTGACTTTT
AATGCATGTATTCATTCATTTCAGTCCAGGTGATGGACATGATTTTGTAA
ATGTAGTACTCTGCATGTGCATCAATTGAGTAGTTTTTCTTCCATTGTTG
GCTAGTCTAACCTGTTCGTCTATCAGTTCATTCATGAGCTCCACTCATTT
CATTCTATTGTAGGTGACGGACATCATTGTGTGCGGACACTATGGCTGCG
GTGGAGTGAGGGCTGCTATGGAGAACAAGGACCACGGTGAGCTTTTTAAC
AGCGTACTAAGTGAACACACTGTGAACTCAGAACAAGTGCGGGGCGAACA
TGGTAAAGCAGGCAATGAACGGCATTTTAGATGACATGCTCTTGCAAATG
TGCTGGTGCAAATGACCAGTCAACAGACGTTCCTACAATGGCTCTTTGGT
GTCACTTGGAAGCCACGGTATGGTGCCATGACCACATGCCCTGGACAACG
AAGTCGAGCATCAATTGAGGGTCCCATGTATATAGACGGCGCGGATAGAA
CACGATTGCCGTTGTCAAACTTCCCCTCACACAACGTAAGTGCTAGGGTT
ATGGTGAGCCCTCCGCACTGTGTAGTGTCGCTGTGTAAGTAGAACAAGTG
CTAAATGGCAAATGTAAAGGCTAAAATATGGAAGCAGCAGCTTCATGTTC
TTCCATGTATATATATCCCTCCAGTGAGGATGCTGGCGCTGGTATGTATA
CATAATTCTGAACAGTAGAGTCTTCGCTTGTATGTTTTCAATAGGTCACA
CACTAAGGTCATGCACAAAAGCACAGACACGAGAGAAACTAATAGCAAGC
TGGGTGGCTGCTGTTTTTTCAAAGACGCACTACCACAGTTGCATAGGACG
GTCATGGTGAAAGTCACAGTTGGAGTTCAAGTAAGCTGAAAATCTGTGCG
AGGCCCCAGATGCATCGTTGCGTTGTGCCTCACTTTTGAGTAGCGAGCGG
CCGCTTTTTGAGAAGAGAATATTGTTGAGTGCACTGATCGAAAGAAGAAG
AGTGATGAAAGCAATATGAGCTCTGCCTGGGCATGGGGTGAAGGTAAGGT
GTAAGCTCTCATCCCACTTACACGTTGACAACCCTCAACCATGTTTGGTT
GTGGTACTTGGTGATTAGCATACCTGCATGGTCGCTGATCGCACCTGTAG
TATGATCTTTTGACTGCCATCACTCGCAACAGGGCTGCTGGAGCACACAT
GAGAGCCCAACTTCTAGAATTTCTTTGACTGCCGGTACTAGCTGCAGGGC
TGGAGCTCTGGCTGATGCGCATAATTCTACATGATATCCCCTATAGTAGA
GTACATTGATGGGGATTTTCAACGATGGTTTTCCTGAGACCCTCATTTGA
CTGCTGTTTGGTGCTGCAGGTTTGCTCAAGCACTGGCTCGTGCACATACA
TACATATCACCTCTATAGTAGTCTACATCTATGACAATGCTTCAAACTGC
TGTACCTCAGACCCCTGCATATATACAGTACATAAACTGTGACATCTTGA
TTGCTGTTCTGTGCTCCAGGTTTGCTTGAGCACTGGCTCATGCATTGTAC
ATGATACCCCATACACTTGTGTAGATCTGGATTTTCAACAATGATTTATC
TGACACCCTTACTTCACTGCTGTTACTCTCTGCAGGTCTGCTTGAGCACT
GGCTCATGCACATCCGCAACGTGCAGCGGTTGCACCAGGCAGAGCTCGCG
GAGATTCCCAATGAAGAGGAGCGTCACCAGCGCCTAGTTGAACTTAATGT
TCAAGAGGCCTGCATGAACCTGTTTGCCAACCCTGTCGTGCAGAAGAAGC
AGGTGCGGCATACTTCAAGTGCAGTGGCAGTCCGATGGATGCGTTTGACT
CAATTAGCCATAACTGCAATTAGTGCGCAGCTACATACAGAAGCACATAG
ACAAGAAAAGAGCATGTTGTTGAAGTTCACAATGAGGATTTGTGCCAACC
TGTGGCGCAGTCTTGTTGTGCTGAAGAAAATTGAGGAGATTCAAAGCACT
AATTCAGAAGTTCAAGTTACGTGCGCAATGAGGAGCAACGCTTAAGTGGA
TTGTTGCGCTTGGTGGTCCTTTGCAGGACTTGTGCGACCATGATGAGGCC
ATAATTGTCGAATATGCAGAGTATGCGCGCAGGGAGCGGACGCGCTTCTA
GCGGCAAAGGTGTGCTGTTTTTTCCATCCTCTTGCCGCCCGGGCCGCCTT
GTCGGATTGTTGGATTGTAGTGCGCCCCAGTGGGCCGGGCGCATGAGTTC
GGCGGGCAAAAAAACACAACAATCCAACAAGGCGAAGAAACCGCGCGCTG
AGGCGTGTCACAGTCGCCGCTGAGCAGTGGGCAGCGGCCGGCGCCATTGC
TGAAGGCAAGGCGGCCCGGGCGGCAACAGGACGGGAAAACGGCACACGTT
CGCCGCTAGGAGTGCGTGCGCTCCCTGCGCGCATTCTCTGCGCACTCGGC
AATGATGGCCTCATCATGGTCGCACACGTCCTGCACCTCTGTATACGCGC
CAGAGTTTCAAAGCACTTAAGTAGAGTCCATCCAGCAAAGCAGCTCGAGT
ATTACTGGCCCCAATGTGCACACGGTTGCACGTACTTCAACTTTGTGCAC
TTCAACAGAGGAATGTCACCAGTGCATAGTCGATTTTGACCTGCAGGACC
TGCACACTTTTTATCGCCCCAACGCATACCATGCCATGTGGTTGTTGTGC
AGCATAACAGTAATGCTTGGAGGTATGTATCATGAGAAGTCAAAGTTGGG
CTCCAAGCATACTCCGTACATAATTCTTGGACATCAGTGACTCTGCTGAT
CTTGTGGTACTGATGTGACCAACTCTCAGAGCATGACCTCAGCGCACGCG
TCAGTGTTATACAATGGCATGCAATATGAATAGCTTTGCAATCATTCCCT
GTCAAGAGGCACACATGTGATGAGCCCTCCCAAAGCGCACCATAGTGGCA
CGTTTTTGGGCACACATGCAACTCCCGGACTGCAATATATGTATTGAAGT
GCTGAAGAAAACAAGTTCCATCTCTCTGTATATGGAGTCACTCACACTGT
AGTGTCTCATTCAGCATCATTATCAAGTGTCTGTACGAAAACATCAACTT
CAACATAGGTGTTGACAAGGTGGCCCTTGGTGGTTTTGAGCGCTGCCGCA
GGCCACGGATGCTCAACCTCGCATCCACGGCTGGGTCTACGACATCGGCA
GCGGCCTGCTTAAGGACTTGAAGATTGACTTTCGCACAGAGATCCGCAAG
TACAAGAACATCTACAGCCTCTACGAGTTCCCGAAATCCACCATTGCAGG
GGCCTCTGCACCGGTTGCACCGAATGGCCGCATGACCCCTCTGAAGAAGG
TTCCTCAGGAGGCGCTGGCGGCTGCTGCGGATAGTTCTTCGTCCCAGGCA
CAGTCCTCGGGGAACCTCTGGAACCGTTTGCAGAGGATCCTTCCTTGA
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Coding sequence (CDS) from alignment at Contig_123:105665..111012-

>mRNA_14479 ID=mRNA_14479|Name=jgi.p|Trimin1|175303|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=852bp|location=Sequence derived from alignment at Contig_123:105665..111012- (Tribonema minus UTEX_B_3156 )
ATGGGCAACAGGAGCCCGTACGAGCGAGCGAAGAGCATCTGGGACACGGC
GGAAAACCTTGACTACATATTCGACAGCAACAAGCGCTGGGTGCAAGACT
GCTTGGAGGAGGATCCTGAAATTTTCACAAGGCTGAAGTACGCACAGGCA
CCCAAGTACCTGTACATCGGCTGCAGCGACAGCCGCGTGCCCGCTCAGAA
CATGCTTGGGCTGACGACGGGAGAGCTGTTTGTGCACCGCAACGTGGCCA
ACCTCTGCGTCAACACGGACTACTCGCTGCTGTCAGTGCTCACGTACGCA
GTGGAGGTTCTTGAGGTGACGGACATCATTGTGTGCGGACACTATGGCTG
CGGTGGAGTGAGGGCTGCTATGGAGAACAAGGACCACGGTCTGCTTGAGC
ACTGGCTCATGCACATCCGCAACGTGCAGCGGTTGCACCAGGCAGAGCTC
GCGGAGATTCCCAATGAAGAGGAGCGTCACCAGCGCCTAGTTGAACTTAA
TGTTCAAGAGGCCTGCATGAACCTGTTTGCCAACCCTGTCGTGCAGAAGA
AGCAGGCCACGGATGCTCAACCTCGCATCCACGGCTGGGTCTACGACATC
GGCAGCGGCCTGCTTAAGGACTTGAAGATTGACTTTCGCACAGAGATCCG
CAAGTACAAGAACATCTACAGCCTCTACGAGTTCCCGAAATCCACCATTG
CAGGGGCCTCTGCACCGGTTGCACCGAATGGCCGCATGACCCCTCTGAAG
AAGGTTCCTCAGGAGGCGCTGGCGGCTGCTGCGGATAGTTCTTCGTCCCA
GGCACAGTCCTCGGGGAACCTCTGGAACCGTTTGCAGAGGATCCTTCCTT
GA
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