mRNA_13941 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|175213 vs. uniprot
Match: A0A835ZD28_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD28_9STRA) HSP 1 Score: 693 bits (1788), Expect = 1.290e-252 Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 1 Query: 1 MLNLSVALLYARPGVPDGSCVQVMCIPDSITPGKDFHTTVRWCLQRPRAFHGSFDIIDRDTKDPYGSTGFTPGGAYQCGEHTYTQNVKAVTPQPDLMFKFFLQPVWGPPDLNSYDPFPNVIAEVGLNKQPDFGALVNDCAPVPTRVWNVAPTGQQNGIDFPKLPDCVTPGEPWSIRVNTHLETEDAADLRVNLQIGTGADKYLGAKDIYVGESNVYGVLSNPVATKWSDLPPKYWTSHDIEFTSKQTELVNKGDNIYIAAFMVPKGEVYDAKQEWTCKWRLHCAAGWKTLLMLFHTSMYNENIKTSLSMDTQALNLSLTLALTLALNRS 987 MLNLSVALLYARPGVPDGSCVQVMCIPDSITPGKDFHTTVRWCLQRPRAFHGSFDIIDRDTKDPYGSTGFTPGGAYQCGEHTYTQNVKAVTPQPDLMFKFFLQPVWGPPDLNSYDPFPNVIAEVGLNKQPDFGALVNDCAPVPTRVWNVAPTGQQNGIDFPKLPDCVTPGEPWSIRVNTHLETEDAADLRVNLQIGTGADKYLGAKDIYVGESNVYGVLSNPVATKWSDLPPKYWTSHDIEFTSKQTELVNKGDNIYIAAFMVPKGEVYDAKQEWTCKWRLHCAAGWKTLLMLFHTSMYNENIKTSLSMDTQALNLSLTLALTLALNRS Sbjct: 1 MLNLSVALLYARPGVPDGSCVQVMCIPDSITPGKDFHTTVRWCLQRPRAFHGSFDIIDRDTKDPYGSTGFTPGGAYQCGEHTYTQNVKAVTPQPDLMFKFFLQPVWGPPDLNSYDPFPNVIAEVGLNKQPDFGALVNDCAPVPTRVWNVAPTGQQNGIDFPKLPDCVTPGEPWSIRVNTHLETEDAADLRVNLQIGTGADKYLGAKDIYVGESNVYGVLSNPVATKWSDLPPKYWTSHDIEFTSKQTELVNKGDNIYIAAFMVPKGEVYDAKQEWTCKWRLHCAAGWKTLLMLFHTSMYNENIKTSLSMDTQALNLSLTLALTLALNRS 329
BLAST of jgi.p|Trimin1|175213 vs. uniprot
Match: A0A835Z2T5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2T5_9STRA) HSP 1 Score: 240 bits (612), Expect = 8.690e-74 Identity = 121/264 (45.83%), Postives = 163/264 (61.74%), Query Frame = 1 Query: 37 PGVPDGSCVQVMCIPDSITPGKDFHTTVRWCLQRPRAFHGSFDIIDRDTKDPYGSTGFTPGGAYQCGEHTYTQNVKAV----TPQPDLMFKFFLQPVWGPP--DLNSYDPFPNVIAEVGLNKQPDFGALVNDCAPVPTRVWNVAPTGQQNGIDFPKLPDCVTPGEPWSIRVNTHLETEDAADLRVNLQIGTGADKYLGAKDIYVGESNVYGVLSNPVATKWSDLPPKYWTSHDIEFTSKQTELVNKGDNIYIAAFMVPKGEVYD 810 PGV GSC QV+C+P SI G FHT VRWCLQRPR H D +D +TK+ YG G+TP G +QCGEHT+ Q + AV T + ++++++F+ PVWG D+ +P+PN IA G+++QP + LV+DC P R+ N PTG Q+GIDFP P C+ PGEP+ + V THL + AADL VNL IGTG DKYLG DI+V ES +G+ + A W+ H FT + T ++ Y+ AF+VP G +D Sbjct: 55 PGVKPGSCFQVVCLPTSIAIGAPFHTRVRWCLQRPRRSHLVVDTLDVNTKEWYGGDGYTPEGEWQCGEHTFEQTMNAVPDPATGEYNVLWRYFVTPVWGDGRYDIREEEPYPNAIAATGIDRQPLYDGLVDDCGLRPDRLVNFPPTGVQDGIDFPYTPYCIQPGEPFFVAVFTHLLSAPAADLHVNLHIGTGPDKYLGPDDIFVAESVEFGIPRDVDAI---------WSRHLARFTGRATAMLVGYSTPYLTAFLVPAGSTFD 309
BLAST of jgi.p|Trimin1|175213 vs. uniprot
Match: A0A835ZES1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES1_9STRA) HSP 1 Score: 241 bits (616), Expect = 2.410e-71 Identity = 132/323 (40.87%), Postives = 169/323 (52.32%), Query Frame = 1 Query: 37 PGVPDGSCVQVMCIPDSITPGKDFHTTVRWCLQRPRAFHGSFDIIDRDTKDPYGSTGFTPGGAYQCGEHTY----TQNVKAVTPQPDLMFKFFLQPVWGPPDLNS--YDPFPNVIAEVGLNKQPDFGALVNDCAPVPTRVWNVAPTGQQNGIDFPKLPDCVTPGEPWSIRVNTHLETEDAADLRVNLQIGTGADKYL--------------------------------------GAKDIYVGESNVYGVLSNPVATKW-SDLPPKYWTSHDIEFTSKQTELVNKGDNIYIAAFMVPKGEVYDAKQEWTCKWRLHCAAGWKTL 870 PGV G C+Q+MCIP + G FH T S +++D TK Y +G P YQCGEHT+ N KA T D+M+K+F+ P WG D N+ YDPFPN++AE G+NKQP +G L DC PVP R WN+ PTG+Q+GIDF +P C+ G+ W+I V HLE+ ADLRVNLQIGTG D YL G KDIYV ESN YG+L NP W + LP YWT++ ++F + Q L + G +YIAAF+VP ++A A GW L Sbjct: 291 PGVKVGGCMQIMCIPQQVGAGDVFHVT------------SSVNLLDMTTKQYYTGSGTQPNQPYQCGEHTFQATFNANYKAGTTTYDIMWKWFVTPFWGSLDANTQYYDPFPNMLAESGINKQPTYGPLQGDCVPVPDRWWNLPPTGEQDGIDFVTIPQCIVKGKAWTIEVKVHLESALTADLRVNLQIGTGGDMYLAHPHVPPTDARKPHVLPSLSSVYHQLTHATLRVTHRTAGDKDIYVTESNKYGILPNPAVVSWDAPLPANYWTTYQMDFDADQMNLFDNGARLYIAAFLVPHLAQFNAT----------IAGGWNVL 591
BLAST of jgi.p|Trimin1|175213 vs. uniprot
Match: A0A836CLJ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLJ9_9STRA) HSP 1 Score: 229 bits (584), Expect = 2.990e-66 Identity = 122/293 (41.64%), Postives = 172/293 (58.70%), Query Frame = 1 Query: 37 PGVPDGSCVQVMCIPDSITPGKDFHTTVRWCLQRPRAFHGSFDIIDRDTKDPYGSTGF-TPGGAYQCGEHTYTQNVKA-VTPQP--DLMFKFFLQPVWGPPDLNSYDPFPNVIAEVGLNKQPDFGALVNDCAPVPTR---VWNVAPTGQQNGIDFPKLPDCVTPGEPWSIRVNTHLETEDAADLRVNLQIGTGADKYLGAKDIYVGESNVYGVLSNPVATKWSDLPPKYWTSHDIEFTSKQTELVNKGDNIYIAAFMVPKGEVYDAKQEWTCKWRLHCAAGWKTLLMLFHTSM 894 PGV G+C+QVMC+P ++ PG FH VR+C+QRPR +H +F ++D+ TK+ YG G QCGE T+ A TP DLM+KFF+ P G D FPN+IAE G+++QP++ A ++ A P + WN+ PTG QNGI++ +P C PG W I+V+THLET+DAADL NLQIG+GAD YLG D ++ E V + +NP W+ +P YWT+ + FT+ +T LV G +Y++ FM P V++ GWK L F+ +M Sbjct: 113 PGVKPGACMQVMCMPKTVQPGDVFHIRVRFCMQRPRRWHLTFGLLDQKTKEFYGGAGAGIVDTKTQCGEVTFEHPFDAGETPAGGFDLMWKFFIIPNHGMNGFYVEDTFPNMIAEAGVDQQPNYLAPLDPAADCPAQDMLQWNLPPTGYQNGIEYTVIPKCFQPGVAWIIQVDTHLETDDAADLHCNLQIGSGADIYLGPADEFIAEYKVNALKANPKTNSWAAIPKGYWTTTPVLFTAAETALVEPGSPVYVSCFMTPVDAVFNKL----------VPGGWKILEREFYLAM 395
BLAST of jgi.p|Trimin1|175213 vs. uniprot
Match: A0A836CPC5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPC5_9STRA) HSP 1 Score: 219 bits (557), Expect = 3.360e-64 Identity = 117/281 (41.64%), Postives = 166/281 (59.07%), Query Frame = 1 Query: 37 PGVPDGSCVQVMCIPDSITPGKDFHTTVRWCLQRPRAFHGSFDIIDRDTKDPYGSTGF-TPGGAYQCGEHTY---------------TQNVKAVTPQP-DLMFKFFLQPVWGP-PDLNSYDPFPNVIAEVGLNKQPDFGALVN---DCAPVPTRVWNVAPTGQQNGIDFPKLPDCVTPGEPWSIRVNTHLETEDAADLRVNLQIGTGADKYLGAKDIYVGESNVYGVLSNPVATKWSDLPPKYWTSHDIEFTSKQTELVNKGDNIYIAAFMVPKGEVYDAK 816 PGV G+C+QVMC+P ++ FHTTVR+CLQRPR +H +F ++D TK G GF +QC EHT+ T+ +TP DLM+KFF P WG D D FPN++AE G++ QP++ + DC PTR WN+ PTG+++GI+F +P C+ PGE W+I V+TH+E+ ADL VN+QIG+G D YLG D+YV ES+++G+ N P + WT + + FT QT+LV + D +Y+A F+V Y+ K Sbjct: 70 PGVKPGACMQVMCVPKAVEKLDKFHTTVRFCLQRPRKWHLAFGLLDMKTKAYLGGEGFGIVDEEWQCAEHTFEHVFLAPKDLPDPATTKPYPNLTPSKLDLMWKFFAIPNWGTGADDYVEDTFPNMLAEAGIDIQPNYLKPLTPEGDCPIKPTRFWNLPPTGEEDGINFSVIPPCLAPGEEWTIVVDTHIESVPMADLHVNMQIGSGGDVYLGDADVYVTESDIFGLDKNT--------PGRKWTQNVVTFTKAQTKLVTRTDKVYLATFLVRPNSQYNKK 342
BLAST of jgi.p|Trimin1|175213 vs. uniprot
Match: A0A835YN55_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN55_9STRA) HSP 1 Score: 211 bits (536), Expect = 2.510e-63 Identity = 113/275 (41.09%), Postives = 157/275 (57.09%), Query Frame = 1 Query: 94 PGKDFHTTVRWCLQRPRAFHGSFDIIDRDTKDPY-GSTGFTPGGAYQCGEHTYTQNVKAVTPQPDLMFKFFLQPVWGPPDLNSY--DPFPNVIAEVGLNKQPDFGALVNDCAPVPT-----RVWNVAPTGQQNGIDFPKLPDCVTPGEPWSIRVNTHLETEDAADLRVNLQIGTGADKYLGAKDIYVGESNVYGVLSNPVATKWSDLPPKYWTSHDIEFTSKQTELVNKGDNIYIAAFMVPKGEVYDAKQEWTCKWRLHCAAGWKTLLMLFHTSM 894 PG F TVR+CLQRPR +H +F ++D TK+ Y G QC E T+T +LM+KF++ WG + N Y D FPN++AE G+ QPD+ ++ P R+W+ PTG QN ID+ +P C P W+++VNTH+ET D ADL NLQIG+GAD +LG D+Y+ E++V G+ +NPVA W LPP YWT +DI FT +QT +V G +Y++ F+VP G +Y+A GW L F TS+ Sbjct: 2 PGNQFRVTVRFCLQRPRRWHLAFALLDMVTKEYYMGDGNGIVDMESQCAEVTFTDIFDVPPDANNLMWKFYVVANWG--NANDYVEDVFPNMLAETGVPMQPDYTQPLDPANMCPETDPNPRMWSYPPTGFQNAIDYAVVPPCFQPNAEWAVQVNTHIETVDEADLHCNLQIGSGADVFLGPADLYLTETDVPGLQANPVAKTWDALPPNYWTINDIVFTPEQTGMVQDGQPVYLSCFLVPAGAIYNAA----------VPGGWHLLEREFFTSV 264
BLAST of jgi.p|Trimin1|175213 vs. uniprot
Match: A0A836CMI4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMI4_9STRA) HSP 1 Score: 144 bits (362), Expect = 2.020e-38 Identity = 75/181 (41.44%), Postives = 111/181 (61.33%), Query Frame = 1 Query: 289 MFKFFLQP---VWGPPDLNSYDPFPNVIAEVGLNKQPDFGA----LVNDCAPVPTRVWNVAPTGQQNGIDFPKLPDCVTPGEPWSIRVNTHLETEDAADLRVNLQIGTGADKYLGAKDIYVGESNVYGVLSNPVATKWSDLPPKYWTSHDIEFTSKQTELVNKGDNIYIAAFMVPKGEVYD 810 M+K+F+ P + P D D FPN++AE G+ KQP + A DC + TR+WN PTG+Q+ +++ + P C+TPG+PWSI++ HLE+ AD+R NL +GTG DKYLG D++V E NV+ V N K WT+H ++FT+ QT+L K + Y+ +FMVP G ++ Sbjct: 1 MWKYFVTPRHYLDHPTD----DIFPNMLAESGIYKQPQYLADGVPTQGDCPILKTRLWNEKPTGKQDAVEYTERPACITPGKPWSIQIRYHLESIQKADMRTNLMLGTGGDKYLGPNDVFVTE-NVFTVSDN-----------KGWTAHTVQFTAAQTQLFAKRPSPYVTSFMVPAGSEFN 165
BLAST of jgi.p|Trimin1|175213 vs. uniprot
Match: A0A835YNJ3_9STRA (Fatty acid desaturase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNJ3_9STRA) HSP 1 Score: 123 bits (308), Expect = 2.590e-27 Identity = 71/178 (39.89%), Postives = 92/178 (51.69%), Query Frame = 1 Query: 397 GALVNDCAPVPTRVWNV----------APTGQQN--GIDFPKLPDCVTPGEPWSIRVNTHLETEDAADLRVNLQIGTGADKYLGAKDIYVGESNVYGVLSNPVATKWSDLPPKYWTSHDIEFTSKQTELVNKGDNIYIAAFMVPKGEVYDAKQEWTCKWRLHCAAGWKTLLMLFHTSM 894 GA DC VP R W+V A G +N I+FP +PDC+TPGE W ++V H+ + AADL VNLQ+GTG + YLGAKD YV E+N +G+ D YW + F+ QT + GD YI AF+VP G YDA GWKTL ++ S+ Sbjct: 1139 GATEGDCNAVPDRSWDVLEPVPGLGAAADAGVKNVDAINFPAVPDCITPGENWDLKVQAHVASLPAADLHVNLQLGTGPNGYLGAKDAYVAEANAFGLKKAAPDATPDDAA--YWDNVVSGFSPLQTRNLKAGDTPYIVAFLVPPGSEYDAT----------IPGGWKTLAKEYYLSL 1304 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175213 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13941 ID=mRNA_13941|Name=jgi.p|Trimin1|175213|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=990bp|location=Sequence derived from alignment at Contig_122:344036..346999+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTCAATCTTTCTGTTGCCTTGCTTTATGCACGCCCAGGTGTCCCCGAback to top protein sequence of jgi.p|Trimin1|175213 >Trimin1|175213|e_gw1.122.64.1 ID=Trimin1|175213|e_gw1.122.64.1|Name=jgi.p|Trimin1|175213|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=330bp MLNLSVALLYARPGVPDGSCVQVMCIPDSITPGKDFHTTVRWCLQRPRAFback to top mRNA from alignment at Contig_122:344036..346999+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13941 ID=mRNA_13941|Name=jgi.p|Trimin1|175213|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2964bp|location=Sequence derived from alignment at Contig_122:344036..346999+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_122:344036..346999+ >mRNA_13941 ID=mRNA_13941|Name=jgi.p|Trimin1|175213|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=990bp|location=Sequence derived from alignment at Contig_122:344036..346999+ (Tribonema minus UTEX_B_3156 )back to top |