mRNA_13905 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|13037
Unique NamemRNA_13905
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|13037 vs. uniprot
Match: A0A836CLC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLC7_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.630e-22
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 3 
Query:  261 TEASPLIPTAYAVPLLPDEPEYTLTTEAAAFEPEQIKPSAPPKDAKR 401
            TEASPLIPTAYAVPLLPDEPEYTLTTEAAAFEPEQIKPSAPPKDAKR
Sbjct:   77 TEASPLIPTAYAVPLLPDEPEYTLTTEAAAFEPEQIKPSAPPKDAKR 123
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|13037 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CLC7_9STRA5.630e-22100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_122contigContig_122:79959..81289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|13037|CE13036_116
Hectar predicted targeting categorysignal peptide
TranscriptId13359
TrackFilteredModels1
ProteinId13037
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|13037gene_13905Tribonema minus UTEX_B_3156 geneContig_122 79959..81289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|13037Trimin1|13037|CE13036_116Tribonema minus UTEX_B_3156 polypeptideContig_122 80225..81111 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13905_1exon_13905_1Tribonema minus UTEX_B_3156 exonContig_122 79959..79980 +
exon_13905_2exon_13905_2Tribonema minus UTEX_B_3156 exonContig_122 80215..80412 +
exon_13905_3exon_13905_3Tribonema minus UTEX_B_3156 exonContig_122 80928..81289 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_13905UTR5_13905Tribonema minus UTEX_B_3156 five_prime_UTRContig_122 79959..79980 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13905CDS_13905Tribonema minus UTEX_B_3156 CDSContig_122 80225..80412 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13905UTR3_13905Tribonema minus UTEX_B_3156 three_prime_UTRContig_122 81112..81289 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13905 ID=mRNA_13905|Name=jgi.p|Trimin1|13037|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=582bp|location=Sequence derived from alignment at Contig_122:79959..81289+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGAAATTCAACTGGAGCACAGATCGAGGATCATGTTTGTCGTCATCGCT
CTGGTGTTCATCATCGTGATGGTGATGTGCTGTTGCTGCTGCGGATGCGG
ATGCGAGCCGATCGCGATGGGAGTGGTGGGAGCAGGAGCAGTGGCGTTGG
GAGTCAGCAAAAGGCGCTCAGCAAAGAAAGACAATGAACAGGCAGCCGCG
TTGGCTGCTGCTGCGCAAAGATACCGCACCGAGTCCCAGCAACAGCAAGC
GCAGCAGCAGACAGAGGCGAGCCCGCTGATACCGACAGCGTACGCAGTGC
CCCTCCTGCCGGATGAGCCGGAATACACGCTGACCACAGAGGCTGCAGCT
TTTGAGCCGGAGCAAATAAAGCCTTCCGCACCCCCCAAGGATGCGAAGCG
GTGATGCTTAGCAGAGAAGTTGAAGTTGTTTGTGTCTGAGCGTTGGGTCA
TGCTTTAGCGGCGGGGGGGGGGTTGGGGGCGAATGTACACTTCAAGCGCA
TCTCGGAGGCAGATGGTCTGGCACCGGCGTGTGCCTGCACACACAGCTGG
ACCCACTGCAGCCATCTCCGCAGCAGGCAGGG
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protein sequence of jgi.p|Trimin1|13037

>Trimin1|13037|CE13036_116 ID=Trimin1|13037|CE13036_116|Name=jgi.p|Trimin1|13037|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=124bp
MFVVIALVFIIVMVMCCCCCGCGCEPIAMGVVGAGAVALGVSKRRSAKKD
NEQAAALAAAAQRYRTESQQQQAQQQTEASPLIPTAYAVPLLPDEPEYTL
TTEAAAFEPEQIKPSAPPKDAKR*
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mRNA from alignment at Contig_122:79959..81289+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13905 ID=mRNA_13905|Name=jgi.p|Trimin1|13037|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1331bp|location=Sequence derived from alignment at Contig_122:79959..81289+ (Tribonema minus UTEX_B_3156 )
CTGAAATTCAACTGGAGCACAGGTACGCAGTTACTTTTATGTCCAGTGCC
AGCGCCTGTACGCCTGCACGTCACCAGAGGCGTCCTTCGGGCCCTCTCGG
CGAAGTGAGAGTTCGCATGCTTGTTGCTGCCTTGTGCTGTTGTGCTCGCA
GTTGCTCGCATCTTTGACCACTATGACATTAAAGCGTCATCCATATTCCT
CGCGCTCGTTGTGACGCTTCTGATGCGCAATCCGTTCTACTCGTTCCCGC
ACGCAGATCGAGGATCATGTTTGTCGTCATCGCTCTGGTGTTCATCATCG
TGATGGTGATGTGCTGTTGCTGCTGCGGATGCGGATGCGAGCCGATCGCG
ATGGGAGTGGTGGGAGCAGGAGCAGTGGCGTTGGGAGTCAGCAAAAGGCG
CTCAGCAAAGAAAGACAATGAACAGGCAGCCGCGTTGGCTGCTGCTGCGC
AAAGGCGAGTGTTTTCGCTTTGCTTGCTCATGACACTATGACGAAAGCAG
ATGATATCCATTGCGACCATGGACGGTTTCAGCTCGTAGTGCTCGTTGAC
AGTTGACACTCCAGCTTCAGTTGCTTGAGAACTAAACGCACATCTACAGC
CGCAGTGCCTGACATCGTTCACTGCTTGGAATACATGAATGGTATGCATA
CGAAGCAGCAGCGCAGCACTGGAGAAGCACGAAGCACTGGAGATGGAAAA
ACTGGTTCCGGAGCTTTTTGTTACTACTTAACGTACTGATTTGATGCGCT
GCATGCCTGCTTTTGGCCCAATTCGTCTGGCCAACATTGTGTGATGCCCC
ATGTGCTACATCATCTGCAAGCCGGCTACATACCATATGAATGACAAGCT
AACTGCCAACTACAACTGACGGTTGGATGAACGTGGCTCTCCGCTTACGT
GCCTTGCCTATTGCTCATCATCGAAACGACTTGCTCACCATCAACATGAC
TCGTGTACTGTCGCTGCAGATACCGCACCGAGTCCCAGCAACAGCAAGCG
CAGCAGCAGACAGAGGCGAGCCCGCTGATACCGACAGCGTACGCAGTGCC
CCTCCTGCCGGATGAGCCGGAATACACGCTGACCACAGAGGCTGCAGCTT
TTGAGCCGGAGCAAATAAAGCCTTCCGCACCCCCCAAGGATGCGAAGCGG
TGATGCTTAGCAGAGAAGTTGAAGTTGTTTGTGTCTGAGCGTTGGGTCAT
GCTTTAGCGGCGGGGGGGGGGTTGGGGGCGAATGTACACTTCAAGCGCAT
CTCGGAGGCAGATGGTCTGGCACCGGCGTGTGCCTGCACACACAGCTGGA
CCCACTGCAGCCATCTCCGCAGCAGGCAGGG
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Coding sequence (CDS) from alignment at Contig_122:79959..81289+

>mRNA_13905 ID=mRNA_13905|Name=jgi.p|Trimin1|13037|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=372bp|location=Sequence derived from alignment at Contig_122:79959..81289+ (Tribonema minus UTEX_B_3156 )
ATGTTTGTCGTCATCGCTCTGGTGTTCATCATCGTGATGGTGATGTGCTG
TTGCTGCTGCGGATGCGGATGCGAGCCGATCGCGATGGGAGTGGTGGGAG
CAGGAGCAGTGGCGTTGGGAGTCAGCAAAAGGCGCTCAGCAAAGAAAGAC
AATGAACAGGCAGCCGCGTTGGCTGCTGCTGCGCAAAGATACCGCACCGA
GTCCCAGCAACAGCAAGCGCAGCAGCAGACAGAGGCGAGCCCGCTGATAC
CGACAGCGTACGCAGTGCCCCTCCTGCCGGATGAGCCGGAATACACGCTG
ACCACAGAGGCTGCAGCTTTTGAGCCGGAGCAAATAAAGCCTTCCGCACC
CCCCAAGGATGCGAAGCGGTGA
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