mRNA_915 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|156481
Unique Name	mRNA_915
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|156481 vs. uniprot
Match: A0A836CNB8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB8_9STRA)

HSP 1 Score: 254 bits (650), Expect = 6.050e-86
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1

Query:    1 MDHVSIEDVDARSGDARRPVPDRLRDPRQRFCVLTVVAPRGTGQRCKDMLIRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNFTAFLKGEKAE 372
            MDHVSIEDVDARSGDARRPVPDRLRDPRQRFCVLTVVAPRGTGQRCKDMLIRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNFTAFLKGEKAE
Sbjct:    1 MDHVSIEDVDARSGDARRPVPDRLRDPRQRFCVLTVVAPRGTGQRCKDMLIRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNFTAFLKGEKAE 124

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BLAST of jgi.p|Trimin1|156481 vs. uniprot
Match: A0A835ZEC6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC6_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.120e-37
Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 1

Query:   46 ARRPVPDRLRDPRQRFCVLTVVAPRGTGQRCKDMLIRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNFTAFLKGEKAE 372
            +R+PVP  L D  QR+CV+TVVAP GT Q+ +++ IR+HGCKE+  EA+ WAR LRDSN F+DVYV  TNEW PLPP V  ++ V FTD RVQ + D+     KG+K E
Sbjct:    3 SRKPVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKRE 111

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BLAST of jgi.p|Trimin1|156481 vs. uniprot
Match: A0A835YQY9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQY9_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.940e-37
Identity = 59/109 (54.13%), Postives = 79/109 (72.48%), Query Frame = 1

Query:   46 ARRPVPDRLRDPRQRFCVLTVVAPRGTGQRCKDMLIRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNFTAFLKGEKAE 372
            +R+PVP  L D  QR+CV+TVVAP GT Q+ K++LIR+HGC+E+  EA+ WA+SLR+ N+F+DVY   TNEW PLPP +  ++ V FTD RVQ + D+     KGEK E
Sbjct:    3 SRKPVPHHLTDSSQRYCVMTVVAPSGTNQKAKELLIRVHGCRESLAEANRWAKSLRNENNFFDVYTLKTNEWAPLPPRIDEIDNVNFTDGRVQAVFDSHREHQKGEKKE 111

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BLAST of jgi.p|Trimin1|156481 vs. uniprot
Match: A0A836CF96_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF96_9STRA)

HSP 1 Score: 127 bits (320), Expect = 5.780e-36
Identity = 55/94 (58.51%), Postives = 73/94 (77.66%), Query Frame = 1

Query:   85 QRFCVLTVVAPRGTGQRCKDMLIRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNFTAFLKGEK 366
            QRFCV+TVVAP GT Q+ +DM+IR++GCKET  EA+ WA+S+RDS D +DVYV  TN W PLPP +S ++EV FTD RVQ +HD++    +G+K
Sbjct:    1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQK 94

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BLAST of jgi.p|Trimin1|156481 vs. uniprot
Match: A0A835Z6B0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6B0_9STRA)

HSP 1 Score: 130 bits (328), Expect = 9.900e-36
Identity = 60/119 (50.42%), Postives = 87/119 (73.11%), Query Frame = 1

Query:   13 SIEDVDARSGDARRPVPDRLRDPRQRFCVLTVVAPRGTGQRCKDMLIRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNFTAFLKGEKA 369
            ++E V+ R+     PVPDRL++P+Q F VL+V+AP GT Q   D++IR++GC +T E A+A+ARSLRD+ND YDV V    EW+PLPP+   ++ V +TD+RV +I +N+ + LKGEKA
Sbjct:    5 NVESVEDRAFKFELPVPDRLKNPKQNFTVLSVIAPTGTNQTAPDLMIRVYGCCDTLESANAFARSLRDANDVYDVLVMPNFEWIPLPPNFEEIDYVNYTDKRVTEIRENYISHLKGEKA 123

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BLAST of jgi.p|Trimin1|156481 vs. uniprot
Match: A0A835Z4I9_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I9_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.420e-35
Identity = 57/106 (53.77%), Postives = 81/106 (76.42%), Query Frame = 1

Query:   55 PVPDRLRDPRQRFCVLTVVAPRGTGQRCKDMLIRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNFTAFLKGEKAE 372
            PV DRLRD  Q++ V+++VAP GT Q+ KDM+IRI+GC+ T ++A+ +AR LRDSN+F+DVY   T+EW PLPP + ++E+V  TD R+Q I D++   LKG+KAE
Sbjct:    2 PVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPRIDSIEDVQCTDERIQSIRDSYIEHLKGQKAE 107

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BLAST of jgi.p|Trimin1|156481 vs. uniprot
Match: Q6XLT3_9PHYC (FirrV-1-O1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT3_9PHYC)

HSP 1 Score: 65.1 bits (157), Expect = 6.360e-11
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 1

Query:  151 IRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNFT 345
            I++ G   T +EA+  A  + + NDF+DVYVA TN W+P+PP    +E+V + + R++DI D FT
Sbjct:   50 IKVFGTYRTLDEANRAAGVISNENDFFDVYVADTNAWLPIPPSSKFIEDVRYQEERLKDIKDTFT 114

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BLAST of jgi.p|Trimin1|156481 vs. uniprot
Match: B5LWJ0_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWJ0_9PHYC)

HSP 1 Score: 63.5 bits (153), Expect = 2.970e-10
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 1

Query:  151 IRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNFTAFLKGEKAE 372
            ++I G   T E+A+  A  + +  DF+DVYVA TN WVP+PP    VEEV + ++R+ +I D F    + + A+
Sbjct:   47 VKIFGAYRTLEDANRAADKISNEMDFFDVYVADTNAWVPIPPSQEFVEEVEYQEKRMSEIKDTFIKMKQRDAAQ 120

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BLAST of jgi.p|Trimin1|156481 vs. uniprot
Match: A0A6G6XP11_9PHYC (Uncharacterized protein n=1 Tax=Dishui Lake phycodnavirus 4 TaxID=2704072 RepID=A0A6G6XP11_9PHYC)

HSP 1 Score: 61.2 bits (147), Expect = 9.850e-9
Identity = 30/93 (32.26%), Postives = 57/93 (61.29%), Query Frame = 1

Query:   64 DRLRDPRQRFCVLTVVAPRGTGQRCKDMLIRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNF 342
            D L  P Q++ VL+ + P    Q+ +   I+I GC +T +EA+  A  L+  +  +D+YV+   +WV +PPD S +++V +T+ ++Q+I + +
Sbjct:   36 DTLVVPGQKYVVLSCIGPEAP-QKHEKFGIKIRGCFDTQDEAAKHAAKLQAEDPTFDIYVSDMYQWVLIPPDPSKIDDVHYTNDKLQEIMNGY 127

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BLAST of jgi.p|Trimin1|156481 vs. uniprot
Match: Q6XM64_9PHYC (FirrV-1-A23 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM64_9PHYC)

HSP 1 Score: 57.0 bits (136), Expect = 9.620e-8
Identity = 24/65 (36.92%), Postives = 42/65 (64.62%), Query Frame = 1

Query:  151 IRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNFT 345
            I++ G   T EEA++ + ++ +  DF+DV+VA TN W+P+PP    +++V + +  +Q I D FT
Sbjct:   50 IKVFGTFRTMEEANSASETISNECDFFDVFVADTNVWLPIPPSNDFIKDVKYQEEHLQRIRDTFT 114

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|156481 vs. uniprot

BLAST of jgi.p|Trimin1|156481 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10


Match Name	E-value	Identity	Description
A0A836CNB8_9STRA	6.050e-86	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]
A0A835ZEC6_9STRA	1.120e-37	55.96	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YQY9_9STRA	1.940e-37	54.13	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CF96_9STRA	5.780e-36	58.51	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]
A0A835Z6B0_9STRA	9.900e-36	50.42	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835Z4I9_9STRA	1.420e-35	53.77	Uncharacterized protein n=2 Tax=Tribonema minus Ta...	[more]
Q6XLT3_9PHYC	6.360e-11	43.08	FirrV-1-O1 n=1 Tax=Feldmannia irregularis virus a ...	[more]
B5LWJ0_9PHYC	2.970e-10	39.19	Uncharacterized protein n=1 Tax=Feldmannia species...	[more]
A0A6G6XP11_9PHYC	9.850e-9	32.26	Uncharacterized protein n=1 Tax=Dishui Lake phycod...	[more]
Q6XM64_9PHYC	9.620e-8	36.92	FirrV-1-A23 n=1 Tax=Feldmannia irregularis virus a...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_1	contig	Contig_1:51979..52350 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|156481\|e_gw1.1.395.1
Max annot lvl	10239\|Viruses
EggNOG OGs	4QE6F@10239\|Viruses,4QXY1@35237\|dsDNA viruses no RNA stage
Evalue	1.47e-09
Seed ortholog	97195.Q91DI1_HAV01
Hectar predicted targeting category	other localisation
TranscriptId	156803
Track	FilteredModels1
ProteinId	156481

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|156481	gene_915	Tribonema minus UTEX_B_3156	gene	Contig_1 51979..52350 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_915_1	exon_915_1	Tribonema minus UTEX_B_3156	exon	Contig_1 51979..52350 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_915	CDS_915	Tribonema minus UTEX_B_3156	CDS	Contig_1 51979..52350 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|156481	Trimin1\|156481\|e_gw1.1.395.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_1 51979..52350 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_1:51979..52350+
coding sequence from alignment at Contig_1:51979..52350+

spliced messenger RNA

>mRNA_915 ID=mRNA_915|Name=jgi.p|Trimin1|156481|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=372bp|location=Sequence derived from alignment at Contig_1:51979..52350+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCACGTCAGCATCGAGGACGTCGACGCCCGCTCCGGAGACGCCCG
CCGCCCCGTCCCCGACAGGCTGCGGGATCCTCGCCAGCGGTTCTGCGTGC
TGACCGTCGTGGCCCCCCGGGGCACGGGCCAGAGGTGCAAGGACATGCTC
ATCAGGATCCACGGCTGCAAGGAGACCGCCGAGGAGGCCAGCGCCTGGGC
CCGCTCCCTGCGCGACAGCAACGACTTCTACGACGTCTACGTCGCCAGCA
CCAACGAGTGGGTGCCCCTGCCCCCCGACGTCTCGACCGTCGAGGAGGTC
GGCTTCACCGACAGGAGGGTGCAGGACATCCACGACAACTTCACGGCCTT
CCTCAAGGGGGAGAAGGCGGAG

protein sequence of jgi.p|Trimin1|156481

>Trimin1|156481|e_gw1.1.395.1 ID=Trimin1|156481|e_gw1.1.395.1|Name=jgi.p|Trimin1|156481|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=124bp
MDHVSIEDVDARSGDARRPVPDRLRDPRQRFCVLTVVAPRGTGQRCKDML
IRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEV
GFTDRRVQDIHDNFTAFLKGEKAE

mRNA from alignment at Contig_1:51979..52350+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_915 ID=mRNA_915|Name=jgi.p|Trimin1|156481|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=372bp|location=Sequence derived from alignment at Contig_1:51979..52350+ (Tribonema minus UTEX_B_3156 )
ATGGACCACGTCAGCATCGAGGACGTCGACGCCCGCTCCGGAGACGCCCG
CCGCCCCGTCCCCGACAGGCTGCGGGATCCTCGCCAGCGGTTCTGCGTGC
TGACCGTCGTGGCCCCCCGGGGCACGGGCCAGAGGTGCAAGGACATGCTC
ATCAGGATCCACGGCTGCAAGGAGACCGCCGAGGAGGCCAGCGCCTGGGC
CCGCTCCCTGCGCGACAGCAACGACTTCTACGACGTCTACGTCGCCAGCA
CCAACGAGTGGGTGCCCCTGCCCCCCGACGTCTCGACCGTCGAGGAGGTC
GGCTTCACCGACAGGAGGGTGCAGGACATCCACGACAACTTCACGGCCTT
CCTCAAGGGGGAGAAGGCGGAG

Coding sequence (CDS) from alignment at Contig_1:51979..52350+

>mRNA_915 ID=mRNA_915|Name=jgi.p|Trimin1|156481|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=372bp|location=Sequence derived from alignment at Contig_1:51979..52350+ (Tribonema minus UTEX_B_3156 )
ATGGACCACGTCAGCATCGAGGACGTCGACGCCCGCTCCGGAGACGCCCG
CCGCCCCGTCCCCGACAGGCTGCGGGATCCTCGCCAGCGGTTCTGCGTGC
TGACCGTCGTGGCCCCCCGGGGCACGGGCCAGAGGTGCAAGGACATGCTC
ATCAGGATCCACGGCTGCAAGGAGACCGCCGAGGAGGCCAGCGCCTGGGC
CCGCTCCCTGCGCGACAGCAACGACTTCTACGACGTCTACGTCGCCAGCA
CCAACGAGTGGGTGCCCCTGCCCCCCGACGTCTCGACCGTCGAGGAGGTC
GGCTTCACCGACAGGAGGGTGCAGGACATCCACGACAACTTCACGGCCTT
CCTCAAGGGGGAGAAGGCGGAG