mRNA_3730 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160163
Unique NamemRNA_3730
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|160163 vs. uniprot
Match: A0A835ZDC2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDC2_9STRA)

HSP 1 Score: 224 bits (571), Expect = 2.710e-74
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 
Query:    1 MALSQKGNFSYLRDDVNFVVIDGSLTARIERIHDDVARLFIIGTNNVQVPVPPHIQLVDETGAQIAPFMDNFLITWIGSYALTVNGQIFLKLGNQRQQLLSAPDHAPSGTV 333
            MALSQKGNFSYLRDDVNFVVIDGSLTARIERIHDDVARLFIIGTNNVQVPVPPHIQLVDETGAQIAPFMDNFLITWIGSYALTVNGQIFLKLGNQRQQLLSAPDHAPSGTV
Sbjct:    1 MALSQKGNFSYLRDDVNFVVIDGSLTARIERIHDDVARLFIIGTNNVQVPVPPHIQLVDETGAQIAPFMDNFLITWIGSYALTVNGQIFLKLGNQRQQLLSAPDHAPSGTV 111
[Close]
BLAST of jgi.p|Trimin1|160163 vs. uniprot
Match: I0Z6N7_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z6N7_COCSC)

HSP 1 Score: 134 bits (336), Expect = 1.810e-38
Identity = 60/111 (54.05%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:    1 MALSQKGNFSYLRDDVNFVVIDGSLTARIERIHDDVARLFIIGTNNVQVPVPPHIQLVDETGAQIAPFMDNFLITWIGSYALTVNGQIFLKLGNQRQQLLSAPDHAPSGTV 333
            M L+ KG+FSYL+D+VN++ IDG+L+ RIERI+++VAR++I    NVQ PVPPHI + D  GA + PF++NFLITW GSY L++NGQ  + L NQ++Q +  P +A SG V
Sbjct:    1 MVLTNKGSFSYLQDNVNYLQIDGALSIRIERINNNVARVYIANAENVQQPVPPHITMADSAGAPVLPFLENFLITWFGSYVLSINGQPHMILNNQKRQSIIGPSYAASGVV 111
[Close]
BLAST of jgi.p|Trimin1|160163 vs. uniprot
Match: A0A2K3CR62_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CR62_CHLRE)

HSP 1 Score: 119 bits (298), Expect = 1.090e-32
Identity = 52/107 (48.60%), Postives = 81/107 (75.70%), Query Frame = 1 
Query:    1 MALSQKGNFSYLRDDVNFVVIDGSLTARIERIHDDVARLFIIGTNNVQVPVPPHIQLVDETGAQIAPFMDNFLITWIGSYALTVNGQIFLKLGNQRQQLL-SAPDHA 318
            M+L+ KG+FSYL DDVN++ +D   TA++ERI + VAR++++  NNVQV VP ++ ++DE G  +APFM NF+ITW+ +Y LT+NGQ+ +++ NQ++Q +   PD A
Sbjct:    1 MSLNNKGSFSYLNDDVNWIRLDAVTTAKVERISNSVARVYLVDNNNVQVAVPNNVTMMDEVGNVVAPFMQNFMITWVETYTLTLNGQVVMRINNQKEQSIWGRPDAA 107
[Close]
BLAST of jgi.p|Trimin1|160163 vs. uniprot
Match: A0A836BAA2_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BAA2_9CHLO)

HSP 1 Score: 119 bits (298), Expect = 1.090e-32
Identity = 55/107 (51.40%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:    1 MALSQKGNFSYLRDDVNFVVIDGSLTARIERIHDDVARLFIIGTNNVQVPVPPHIQLVDETGAQIAPFMDNFLITWIGSYALTVNGQIFLKLGNQRQQ-LLSAPDHA 318
            M+L+QKG FSYL DDV++V +D   TAR+ERI++ VAR++++  +NVQV VP ++ + D+ G  +AP+M NFLITW+ SY LT+NGQ+ +++ N RQQ +L+ PD A
Sbjct:    1 MSLNQKGTFSYLDDDVHWVRLDAVTTARLERINNSVARVYLVDNDNVQVAVPNNLTMTDQAGNVVAPYMQNFLITWVESYTLTLNGQVVMRINNGRQQSILARPDAA 107
[Close]
BLAST of jgi.p|Trimin1|160163 vs. uniprot
Match: A0A835VWS8_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VWS8_CHLIN)

HSP 1 Score: 110 bits (274), Expect = 4.850e-29
Identity = 49/109 (44.95%), Postives = 78/109 (71.56%), Query Frame = 1 
Query:    1 MALSQKGNFSYLRDDVNFVVIDGSLTARIERIHDDVARLFIIGTNNVQVPVPPHIQLVDETGAQIAPFMDNFLITWIGSYALTVNGQIFLKLGNQRQQLLSAPDHAPSG 327
            M+L++KGNFSYL + VN+V +D  +TA++ERI + VAR++++  N+ QV VP ++ ++DE G  +AP   +  ITW+ SY LT+NGQ+ +++ N+RQQ + AP  A  G
Sbjct:    1 MSLNKKGNFSYLNERVNWVRLDAVMTAKVERISNSVARVYLVDNNDAQVAVPDNVTMMDEDGNVVAPLNQDLFITWMVSYTLTLNGQVVMRVDNERQQSIMAPPGAAYG 109
[Close]
BLAST of jgi.p|Trimin1|160163 vs. uniprot
Match: A0A2J8AEI0_9CHLO (Uncharacterized protein n=2 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AEI0_9CHLO)

HSP 1 Score: 103 bits (257), Expect = 1.650e-26
Identity = 46/109 (42.20%), Postives = 76/109 (69.72%), Query Frame = 1 
Query:    7 LSQKGNFSYLRDDVNFVVIDGSLTARIERIHDDVARLFIIGTNNVQVPVPPHIQLVDETGAQIAPFMDNFLITWIGSYALTVNGQIFLKLGNQRQQLLSAPDHAPSGTV 333
            +  KG+FSY  D+V++  ID + TA++ER+ + VAR++++   NVQ+PVP ++++ D+ G    PFM+NF++ W+ +Y L++NGQ+ L+L NQ+ Q LSAP  A  G  
Sbjct:    1 MDTKGSFSYQDDNVHW--IDANTTAKVERVSNSVARVYLVDNANVQIPVPNNMKMTDQGGNICPPFMNNFMVCWMDTYTLSLNGQVVLRLSNQKHQSLSAPPDAAHGVT 107
[Close]
BLAST of jgi.p|Trimin1|160163 vs. uniprot
Match: A0A836BQD0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BQD0_9CHLO)

HSP 1 Score: 102 bits (254), Expect = 5.290e-26
Identity = 46/109 (42.20%), Postives = 72/109 (66.06%), Query Frame = 1 
Query:    1 MALSQKGNFSYLRDDVNFVVIDGSLTARIERIHDDVARLFIIGTNNVQVPVPPHIQLVDETGAQIAPFMDNFLITWIGSYALTVNGQIFLKLGNQRQQLLSAPDHAPSG 327
            MAL++K  FSYL  +VN+V +DG+   ++ER+++ VAR++++   N Q  VP ++ + D  G +  P+ DNF+ITW  SY LT NGQ+ L+L NQ++Q   A  +A  G
Sbjct:    1 MALNKKATFSYLDQNVNWVRLDGNFIVKVERLNNHVARVYLVDNANAQQQVPANMAMTDSEGNRFPPYKDNFMITWADSYTLTFNGQVVLRLNNQKEQAFLALPNAEHG 109
[Close]
BLAST of jgi.p|Trimin1|160163 vs. uniprot
Match: A0A8J9WS54_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WS54_9CHLO)

HSP 1 Score: 102 bits (254), Expect = 5.600e-26
Identity = 48/109 (44.04%), Postives = 75/109 (68.81%), Query Frame = 1 
Query:    7 LSQKGNFSYLRDDVNFVVIDGSLTARIERIHDDVARLFIIGTNNVQVPVPPHIQLVDETGAQIAPFMDNFLITWIGSYALTVNGQIFLKLGNQRQQLLSAPDHAPSGTV 333
            L+ KG+FSY +++VNF+ +D  LT RIE I +++AR++++  + VQ P+P +I +++  G  +    D FLITWI SY L+VNGQ  + L NQ+QQ ++ P HA SG +
Sbjct:    2 LALKGSFSYTQNNVNFMDLDNGLTIRIECIDEEIARVYLVDAHGVQQPIPANITMINAAGHVLPIVNDMFLITWINSYTLSVNGQPRMVLNNQKQQAINGPLHALSGVL 110
[Close]
BLAST of jgi.p|Trimin1|160163 vs. uniprot
Match: A0A2J7ZRE1_9CHLO (Uncharacterized protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZRE1_9CHLO)

HSP 1 Score: 87.4 bits (215), Expect = 3.210e-20
Identity = 50/111 (45.05%), Postives = 69/111 (62.16%), Query Frame = 1 
Query:    1 MALSQKGNFSYLRDDVNFVVIDGSLTARIERIHDDVARLFIIGTNNVQVPVPPHIQLVDETGAQIAP--FMDNFLITWIGSYALTVNGQIFLKLGNQRQQLLSAPDHAPSG 327
            MAL+ KG+FSYL  DVN+V +D +LTA++ER++++VAR  + G +             D  G Q  P  FM NF+ITW  SY LT NGQ+ L+L NQ+QQ + A  +A  G
Sbjct:    1 MALNVKGSFSYLNQDVNWVRLDVNLTAKVERVNNNVAR--VAGKHGY-----------DRFGGQSCPPPFMANFMITWADSYTLTFNGQVVLRLNNQKQQAILALPNAEHG 98
[Close]
BLAST of jgi.p|Trimin1|160163 vs. uniprot
Match: A8I8H0_CHLRE (Predicted protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8I8H0_CHLRE)

HSP 1 Score: 81.6 bits (200), Expect = 9.430e-18
Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = 1 
Query:    7 LSQKGNFSYLRDDVNF--VVIDG-SLTARIERIHDDVARLFIIGTNNVQVPVPPHIQLVDETGAQIAPFMDNFLITWIGSYALTVNGQIFLKLGNQRQQ 294
            +S KG+FSY  D VN   + ++G  +  R+E I++DVA++++      Q P+PP + L D  GA +AP+ + FLITWI SY L V+G   + + NQ+QQ
Sbjct:    6 MSVKGSFSYTNDTVNGFRITVNGIPMHMRVEAINNDVAKVYVTDVQGNQQPMPPSVSLSDAVGANVAPYNNEFLITWINSYVLRVSGVESIWMTNQKQQ 104
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160163 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A835ZDC2_9STRA2.710e-74100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
I0Z6N7_COCSC1.810e-3854.05Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A2K3CR62_CHLRE1.090e-3248.60Uncharacterized protein n=2 Tax=Chlamydomonas rein... [more]
A0A836BAA2_9CHLO1.090e-3251.40Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A835VWS8_CHLIN4.850e-2944.95Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A2J8AEI0_9CHLO1.650e-2642.20Uncharacterized protein n=2 Tax=Tetrabaena sociali... [more]
A0A836BQD0_9CHLO5.290e-2642.20Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A8J9WS54_9CHLO5.600e-2644.04Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A2J7ZRE1_9CHLO3.210e-2045.05Uncharacterized protein n=1 Tax=Tetrabaena sociali... [more]
A8I8H0_CHLRE9.430e-1841.41Predicted protein n=2 Tax=Chlamydomonas reinhardti... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_12contigContig_12:421695..422030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160163|e_gw1.12.6.1
Max annot lvl3041|Chlorophyta
EggNOG OGs2CRNW@1|root,2R8MD@2759|Eukaryota,381PA@33090|Viridiplantae,34NNG@3041|Chlorophyta
Evalue2.96e-39
Seed ortholog248742.XP_005650850.1
Hectar predicted targeting categoryother localisation
TranscriptId160485
TrackFilteredModels1
ProteinId160163
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160163gene_3730Tribonema minus UTEX_B_3156 geneContig_12 421695..422030 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3730_1exon_3730_1Tribonema minus UTEX_B_3156 exonContig_12 421695..422030 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3730CDS_3730Tribonema minus UTEX_B_3156 CDSContig_12 421695..422030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160163Trimin1|160163|e_gw1.12.6.1Tribonema minus UTEX_B_3156 polypeptideContig_12 421695..422030 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3730 ID=mRNA_3730|Name=jgi.p|Trimin1|160163|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=336bp|location=Sequence derived from alignment at Contig_12:421695..422030+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTCAGCCAGAAGGGCAACTTCTCCTACCTCCGAGACGACGTGAA
CTTTGTTGTCATCGACGGCAGCCTCACCGCACGCATAGAGCGCATCCACG
ACGACGTGGCGCGCCTGTTCATTATTGGCACGAACAACGTGCAAGTCCCC
GTGCCCCCGCATATTCAGCTTGTCGACGAGACTGGTGCGCAGATTGCCCC
CTTCATGGACAACTTCCTCATCACCTGGATTGGAAGCTACGCGCTGACTG
TCAATGGTCAGATTTTCCTGAAGCTCGGCAACCAGAGGCAGCAGTTGTTG
TCTGCGCCGGACCACGCACCGAGTGGGACTGTGTGA
back to top

protein sequence of jgi.p|Trimin1|160163

>Trimin1|160163|e_gw1.12.6.1 ID=Trimin1|160163|e_gw1.12.6.1|Name=jgi.p|Trimin1|160163|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=112bp
MALSQKGNFSYLRDDVNFVVIDGSLTARIERIHDDVARLFIIGTNNVQVP
VPPHIQLVDETGAQIAPFMDNFLITWIGSYALTVNGQIFLKLGNQRQQLL
SAPDHAPSGTV*
back to top

mRNA from alignment at Contig_12:421695..422030+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3730 ID=mRNA_3730|Name=jgi.p|Trimin1|160163|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=336bp|location=Sequence derived from alignment at Contig_12:421695..422030+ (Tribonema minus UTEX_B_3156 )
ATGGCGCTCAGCCAGAAGGGCAACTTCTCCTACCTCCGAGACGACGTGAA
CTTTGTTGTCATCGACGGCAGCCTCACCGCACGCATAGAGCGCATCCACG
ACGACGTGGCGCGCCTGTTCATTATTGGCACGAACAACGTGCAAGTCCCC
GTGCCCCCGCATATTCAGCTTGTCGACGAGACTGGTGCGCAGATTGCCCC
CTTCATGGACAACTTCCTCATCACCTGGATTGGAAGCTACGCGCTGACTG
TCAATGGTCAGATTTTCCTGAAGCTCGGCAACCAGAGGCAGCAGTTGTTG
TCTGCGCCGGACCACGCACCGAGTGGGACTGTGTGA
back to top

Coding sequence (CDS) from alignment at Contig_12:421695..422030+

>mRNA_3730 ID=mRNA_3730|Name=jgi.p|Trimin1|160163|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=336bp|location=Sequence derived from alignment at Contig_12:421695..422030+ (Tribonema minus UTEX_B_3156 )
ATGGCGCTCAGCCAGAAGGGCAACTTCTCCTACCTCCGAGACGACGTGAA
CTTTGTTGTCATCGACGGCAGCCTCACCGCACGCATAGAGCGCATCCACG
ACGACGTGGCGCGCCTGTTCATTATTGGCACGAACAACGTGCAAGTCCCC
GTGCCCCCGCATATTCAGCTTGTCGACGAGACTGGTGCGCAGATTGCCCC
CTTCATGGACAACTTCCTCATCACCTGGATTGGAAGCTACGCGCTGACTG
TCAATGGTCAGATTTTCCTGAAGCTCGGCAACCAGAGGCAGCAGTTGTTG
TCTGCGCCGGACCACGCACCGAGTGGGACTGTGTGA
back to top