mRNA_14912 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351714
Unique NamemRNA_14912
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351714 vs. uniprot
Match: A0A835YIC3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIC3_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.730e-52
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 
Query:  160 MAFYRLSKALPYVNFTIATTALTFQITVLHPWHEQLDRDFQALKMDQEAKLEDYHRQKTEKLSTIEHRLSTIARKDSAICHHLEGGA 420
            MAFYRLSKALPYVNFTIATTALTFQITVLHPWHEQLDRDFQALKMDQEAKLEDYHRQKTEKLSTIEHRLSTIARKDSAICHHLEGGA
Sbjct:    1 MAFYRLSKALPYVNFTIATTALTFQITVLHPWHEQLDRDFQALKMDQEAKLEDYHRQKTEKLSTIEHRLSTIARKDSAICHHLEGGA 87
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BLAST of jgi.p|Trimin1|351714 vs. uniprot
Match: A0A0F7SNU0_PHARH (Uncharacterized protein n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SNU0_PHARH)

HSP 1 Score: 79.3 bits (194), Expect = 3.780e-15
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:  184 ALPYVNFTIATTALTFQITVLHPWHEQLDRDFQALKMDQEAKLEDYHRQKTEKLSTIEHRLSTIARK 384
            ALPY+NFTIAT+AL FQ TVL+PWHE+LD  FQ L+ D  +KLE++H+ K ++L  +E RL  +  K
Sbjct:    9 ALPYLNFTIATSALVFQTTVLYPWHEELDEAFQKLRADHVSKLEEFHQIKVQRLEALEQRLHMLDPK 75
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BLAST of jgi.p|Trimin1|351714 vs. uniprot
Match: A0A814ABK2_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814ABK2_9BILA)

HSP 1 Score: 75.1 bits (183), Expect = 1.060e-13
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:  181 KALPYVNFTIATTALTFQITVLHPWHEQLDRDFQALKMDQEAKLEDYHRQKTEKLSTIEHRLSTIARKDSAI 396
            K +P VNF IA+ AL FQ+TVL+PWH +L+R F+ L++ QE KLE+YH+ K + + +IE  ++ +  K   I
Sbjct:    8 KLVPIVNFAIASAALAFQVTVLYPWHHELERKFEELQIQQETKLEEYHQMKMQTIRSIEEHITELKNKKDEI 79
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BLAST of jgi.p|Trimin1|351714 vs. uniprot
Match: A0A5M6BQQ2_9TREE (Uncharacterized protein n=1 Tax=Kwoniella shandongensis TaxID=1734106 RepID=A0A5M6BQQ2_9TREE)

HSP 1 Score: 73.6 bits (179), Expect = 6.310e-13
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:  181 KALPYVNFTIATTALTFQITVLHPWHEQLDRDFQALKMDQEAKLEDYHRQKTEKLSTIEHRLSTIARKDSAICHHLEGGA*PHTTL------STAAAL 456
            + LPY+NF +A+ AL+FQ+TVL+PWH  L  DF ALK +Q  +L +YH +K   ++ +  +L  +A+         EGG+ P TT       STA +L
Sbjct:    5 RILPYINFAVASAALSFQVTVLYPWHHTLTEDFNALKAEQAKQLAEYHEEKANLINALHIKLEEVAKT----MRPSEGGSTPSTTTGQPSISSTAGSL 98
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BLAST of jgi.p|Trimin1|351714 vs. uniprot
Match: A0A813TP28_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A813TP28_ADIRI)

HSP 1 Score: 72.8 bits (177), Expect = 8.860e-13
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:  175 LSKALPYVNFTIATTALTFQITVLHPWHEQLDRDFQALKMDQEAKLEDYHRQKTEKLSTIEHRLSTI 375
            L K LP  NF IA+TAL FQ+TVL+PWH QL++DF  L+ +Q  KL +YH  + E +  IE  LS +
Sbjct:    6 LQKFLPVFNFVIASTALGFQVTVLYPWHNQLEKDFSGLQTNQNTKLHEYHELRMENIKNIERYLSKL 72
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BLAST of jgi.p|Trimin1|351714 vs. uniprot
Match: A0A814CRA2_9BILA (Hypothetical protein n=5 Tax=Adineta steineri TaxID=433720 RepID=A0A814CRA2_9BILA)

HSP 1 Score: 72.0 bits (175), Expect = 1.700e-12
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:  175 LSKALPYVNFTIATTALTFQITVLHPWHEQLDRDFQALKMDQEAKLEDYHRQKTEKLSTIEHRLSTIARK 384
            + K LP  NF IA+TAL FQ+TVL+PWH QL++DF+ L+  QE KL +YH  + + +  IE  LS +  K
Sbjct:    6 IQKILPVFNFFIASTALGFQVTVLYPWHNQLEKDFEGLQHQQETKLHEYHELRMQNIKNIETYLSKLNLK 75
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BLAST of jgi.p|Trimin1|351714 vs. uniprot
Match: A0A0H5QT95_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QT95_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 5.650e-12
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:  133 PEGGVKRRSMAFYRLSKALPYVNFTIATTALTFQITVLHPWHEQLDRDFQALKMDQEAKLEDYHRQKTEKLSTIEHRLSTIARKDSA 393
            P GG    S    R S+ LPY NF I + ALTFQ++VL+PWH QLD+DF+ +K + + KL +YH  K +KL  +   L   + +  A
Sbjct:    7 PPGGDFMSSTWGSRFSRYLPYYNFAIGSFALTFQLSVLYPWHLQLDKDFEKMKAEVDGKLANYHNLKLQKLDLLHQLLEKKSHQTPA 93
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BLAST of jgi.p|Trimin1|351714 vs. uniprot
Match: A0A0C3PU22_PHLGI (Uncharacterized protein n=1 Tax=Phlebiopsis gigantea 11061_1 CR5-6 TaxID=745531 RepID=A0A0C3PU22_PHLGI)

HSP 1 Score: 70.1 bits (170), Expect = 8.710e-12
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:  187 LPYVNFTIATTALTFQITVLHPWHEQLDRDFQALKMDQEAKLEDYHRQKTEKLSTIEHRLSTIARK 384
            LPY+NFT+AT+AL FQ+ VL+PWHE+LD +F+ LK + +  L+ YH  K ++L  +E R+    RK
Sbjct:   11 LPYLNFTVATSALGFQMGVLYPWHEELDHEFKKLKEEHKTLLQVYHEAKLKRLDELEQRVLKTERK 76
[Close]
BLAST of jgi.p|Trimin1|351714 vs. uniprot
Match: A0A813NWS6_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A813NWS6_ADIRI)

HSP 1 Score: 70.1 bits (170), Expect = 8.710e-12
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:  175 LSKALPYVNFTIATTALTFQITVLHPWHEQLDRDFQALKMDQEAKLEDYHRQKTEKLSTIEHRLSTI 375
            L K LP  NF IA++AL FQ+ VL+PWH QLD+DF  L+ +Q  KL +YH  + E +  IE  LS +
Sbjct:    6 LQKFLPVFNFVIASSALCFQMAVLYPWHNQLDKDFSGLQNNQNTKLHEYHELRMENIKNIERYLSKL 72
[Close]
BLAST of jgi.p|Trimin1|351714 vs. uniprot
Match: A0A815K7L6_9BILA (Hypothetical protein n=2 Tax=Adineta steineri TaxID=433720 RepID=A0A815K7L6_9BILA)

HSP 1 Score: 69.3 bits (168), Expect = 1.500e-11
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:  175 LSKALPYVNFTIATTALTFQITVLHPWHEQLDRDFQALKMDQEAKLEDYHRQKTEKLSTIEHRLSTIARK 384
            + K LP+VNF IA+ AL FQ+TVL+PWH +L  +F  L+  Q+AKL  YH  K + +  IE  L+ + R+
Sbjct:    6 IQKYLPFVNFLIASVALGFQVTVLYPWHYELQHEFNELQKQQDAKLRQYHELKMQTIKNIEDNLTKLNRE 75
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351714 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YIC3_9STRA1.730e-52100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0F7SNU0_PHARH3.780e-1555.22Uncharacterized protein n=1 Tax=Phaffia rhodozyma ... [more]
A0A814ABK2_9BILA1.060e-1345.83Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A5M6BQQ2_9TREE6.310e-1339.80Uncharacterized protein n=1 Tax=Kwoniella shandong... [more]
A0A813TP28_ADIRI8.860e-1350.75Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]
A0A814CRA2_9BILA1.700e-1248.57Hypothetical protein n=5 Tax=Adineta steineri TaxI... [more]
A0A0H5QT95_9EUKA5.650e-1242.53Uncharacterized protein (Fragment) n=1 Tax=Spongos... [more]
A0A0C3PU22_PHLGI8.710e-1248.48Uncharacterized protein n=1 Tax=Phlebiopsis gigant... [more]
A0A813NWS6_ADIRI8.710e-1249.25Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A815K7L6_9BILA1.500e-1145.71Hypothetical protein n=2 Tax=Adineta steineri TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_98contigContig_98:317249..318891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351714|estExt_Genemark1.C_Ctg_980035
Max annot lvl4751|Fungi
EggNOG OGs2E2VB@1|root,2SA1K@2759|Eukaryota,3ADIZ@33154|Opisthokonta,3P8MJ@4751|Fungi,3V8H3@5204|Basidiomycota,22D58@155619|Agaricomycetes,3W9AY@5338|Agaricales
Evalue6.74e-15
Seed ortholog5334.XP_003032790.1
Hectar predicted targeting categoryother localisation
TranscriptId352036
TrackFilteredModels1
ProteinId351714
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351714gene_14912Tribonema minus UTEX_B_3156 geneContig_98 317249..318891 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14912_2exon_14912_2Tribonema minus UTEX_B_3156 exonContig_98 317249..317743 -
exon_14912_1exon_14912_1Tribonema minus UTEX_B_3156 exonContig_98 318484..318891 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14912UTR3_14912Tribonema minus UTEX_B_3156 three_prime_UTRContig_98 317249..317728 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14912CDS_14912Tribonema minus UTEX_B_3156 CDSContig_98 318484..318732 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14912UTR5_14912Tribonema minus UTEX_B_3156 five_prime_UTRContig_98 318733..318891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351714Trimin1|351714|estExt_Genemark1.C_Ctg_980035Tribonema minus UTEX_B_3156 polypeptideContig_98 317729..318732 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14912 ID=mRNA_14912|Name=jgi.p|Trimin1|351714|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=903bp|location=Sequence derived from alignment at Contig_98:317249..318891- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCCATTGTCATTGCGCAGCATCATTCAGCATCAGCGAGGCAACGAAGT
TTGCGGAAAGTGTATCACCGTTGACCAGGCGCACCCCAGCACGGGCGCTT
CCACAGTGTACGGAGGCAGTGCAACAGCTTAGCCGGAAGGTGGTGTGAAG
AGGCGCAGCATGGCGTTCTATAGATTGTCCAAGGCGCTGCCCTACGTCAA
CTTCACCATCGCCACCACGGCGCTGACCTTCCAAATTACAGTGTTGCACC
CCTGGCACGAGCAGCTCGACAGGGACTTCCAGGCCCTCAAGATGGATCAG
GAGGCCAAGCTGGAGGACTACCACAGGCAAAAGACGGAGAAGCTGAGCAC
CATCGAGCACAGGCTGTCTACCATCGCCCGCAAGGACTCCGCCATCTGCC
ACCACCTGGAAGGGGGGGCGTGACCCCACACAACACTGAGCACTGCTGCA
GCATTGCACACCACCGAGGCGCAAGCGCCCGTCCCCCTCTAGCAGACCCT
CGCCTACCATACCTGCCTACCCCCCCGCACCCCAACGTACCTACCTCGAA
GGCGACATGCGCGCGGCCCCGCCTGACAGCAGCACCCAACTTCAACTCCA
TCTTATCTCTTCAACTCCATCTCATCTTTGTGGGCAGCCCCCCCTTCCCC
TTGCTTCCGCGGTGCCTTGGCACGCGGCTGCCAGGGGGTGGGGGCTCACT
ACATACCCACCTCAGCCCCTCTTTTAGCGTGTAATCTGTAGTGTTTGTGA
GGCGTTCAGCTTGCGCAGCATGTGCGCTGCTGTCCCGAAATGGATATGGT
GCGATGCACGATGTGCTCCACACGGCGATTGTCGCTGGCCCTGAGTTCTC
AGCGTGCGTGTGCCTGCTGTGTTGTTGCGAGCGTTGAGCTCGCTGCGTGC
TTG
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protein sequence of jgi.p|Trimin1|351714

>Trimin1|351714|estExt_Genemark1.C_Ctg_980035 ID=Trimin1|351714|estExt_Genemark1.C_Ctg_980035|Name=jgi.p|Trimin1|351714|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=88bp
MAFYRLSKALPYVNFTIATTALTFQITVLHPWHEQLDRDFQALKMDQEAK
LEDYHRQKTEKLSTIEHRLSTIARKDSAICHHLEGGA*
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mRNA from alignment at Contig_98:317249..318891-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14912 ID=mRNA_14912|Name=jgi.p|Trimin1|351714|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1643bp|location=Sequence derived from alignment at Contig_98:317249..318891- (Tribonema minus UTEX_B_3156 )
CAGCCATTGTCATTGCGCAGCATCATTCAGCATCAGCGAGGCAACGAAGT
TTGCGGAAAGTGTATCACCGTTGACCAGGCGCACCCCAGCACGGGCGCTT
CCACAGTGTACGGAGGCAGTGCAACAGCTTAGCCGGAAGGTGGTGTGAAG
AGGCGCAGCATGGCGTTCTATAGATTGTCCAAGGCGCTGCCCTACGTCAA
CTTCACCATCGCCACCACGGCGCTGACCTTCCAAATTACAGTGTTGCACC
CCTGGCACGAGCAGCTCGACAGGGACTTCCAGGCCCTCAAGATGGATCAG
GAGGCCAAGCTGGAGGACTACCACAGGCAAAAGACGGAGAAGCTGAGCAC
CATCGAGCACAGGCTGTCTACCATCGCCCGCAAGGACTCCGCCATCTGCC
ACCACCTGGTACGTCGTGTTGTGAGTGCACTAGAAGTTCCAGTATGGACG
ACTGTTGCCAGCTGTTGCCAGTTTTGCGAGTAGAACAGTTGCAGAACGAG
ATGAGCCCACTGGGTCTACTGCTTCCGATGTGACAAGTACTGCCGCTTGT
GATGAAACGCATCAATTCAGAACGAACACTGCTGCCGACAAGCTGCAGGC
ATCTGTGACAGGTATTGCACATTGTTTTGCTGCACCTGTTGCCCCACAAG
GGCGCTTTTGAACGCCAGCACGTCACAAGGACAGGCAGTCCGGTAAGCCT
GGTCGAGCAGCGCAAAGTCATGTGGACTCTGCTGGAGTGCTGATGGCCGT
CGCATTGCGTAGCGTGCCCTGAGCGAATGCACCATCGTGCACGCCGCTGA
CGCTGCGACTGAACGCTGCGACTGACAACAGCAGGAAACAGCAGCCGGTG
TCAGTTTTTATCAGTAGGTGCCCTGCTGCATGAGTTATTCGTACGCCACT
GACGCAGCGACTGACAACAGCAGGAAACAGCAGCCGGTTTCACTTTTTAT
CAGTAGGTGCCCTGCTGCACGAGTTCTTCGTGATGCGACTTAATTCTGTA
CTGTCGCTGGCGCTTCGGCGCCTGAACACTGCCCCCATTTCCCCCTGAGC
ATAACAATACGGCAGCGCCGCTCCAGCCTTGATGAACAGCGTTCGCGCTC
ACGTGCTCCACCCATCCCCTTCTCCGCTCTGACGCGTGCTGCTCGCAGGA
AGGGGGGGCGTGACCCCACACAACACTGAGCACTGCTGCAGCATTGCACA
CCACCGAGGCGCAAGCGCCCGTCCCCCTCTAGCAGACCCTCGCCTACCAT
ACCTGCCTACCCCCCCGCACCCCAACGTACCTACCTCGAAGGCGACATGC
GCGCGGCCCCGCCTGACAGCAGCACCCAACTTCAACTCCATCTTATCTCT
TCAACTCCATCTCATCTTTGTGGGCAGCCCCCCCTTCCCCTTGCTTCCGC
GGTGCCTTGGCACGCGGCTGCCAGGGGGTGGGGGCTCACTACATACCCAC
CTCAGCCCCTCTTTTAGCGTGTAATCTGTAGTGTTTGTGAGGCGTTCAGC
TTGCGCAGCATGTGCGCTGCTGTCCCGAAATGGATATGGTGCGATGCACG
ATGTGCTCCACACGGCGATTGTCGCTGGCCCTGAGTTCTCAGCGTGCGTG
TGCCTGCTGTGTTGTTGCGAGCGTTGAGCTCGCTGCGTGCTTG
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Coding sequence (CDS) from alignment at Contig_98:317249..318891-

>mRNA_14912 ID=mRNA_14912|Name=jgi.p|Trimin1|351714|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=264bp|location=Sequence derived from alignment at Contig_98:317249..318891- (Tribonema minus UTEX_B_3156 )
ATGGCGTTCTATAGATTGTCCAAGGCGCTGCCCTACGTCAACTTCACCAT
CGCCACCACGGCGCTGACCTTCCAAATTACAGTGTTGCACCCCTGGCACG
AGCAGCTCGACAGGGACTTCCAGGCCCTCAAGATGGATCAGGAGGCCAAG
CTGGAGGACTACCACAGGCAAAAGACGGAGAAGCTGAGCACCATCGAGCA
CAGGCTGTCTACCATCGCCCGCAAGGACTCCGCCATCTGCCACCACCTGG
AAGGGGGGGCGTGA
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