mRNA_13060 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172801
Unique NamemRNA_13060
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|172801 vs. uniprot
Match: A0A835YQ12_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ12_9STRA)

HSP 1 Score: 108 bits (269), Expect = 4.120e-30
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 TSAEEEDMEQMFVPGPDGSMEYGGPTRGGKLAEPTRFGDWERKGRCTDF 147
            TSAEEEDMEQMFVPGPDGSMEYGGPTRGGKLAEPTRFGDWERKGRCTDF
Sbjct:    1 TSAEEEDMEQMFVPGPDGSMEYGGPTRGGKLAEPTRFGDWERKGRCTDF 49
[Close]
BLAST of jgi.p|Trimin1|172801 vs. uniprot
Match: W7TYA2_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYA2_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 5.590e-18
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:   13 EEDMEQMFVPGPDGSMEYGGPTRGGKLAEPTRFGDWERKGRCTDF 147
            E++ME+MFV GP G +E+GGPTRGG+  EPTRFGDWERKGRCTDF
Sbjct:  121 EDEMEEMFVMGPSGRVEWGGPTRGGRHKEPTRFGDWERKGRCTDF 165
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BLAST of jgi.p|Trimin1|172801 vs. uniprot
Match: A0A7S1U9V4_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9V4_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.960e-16
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   10 EEEDMEQMFVPGPDGSMEYGGPTRGGKLAEPTRFGDWERKGRCTDF 147
            +EED E+M + GP G  E+GGP RGGKLAEPTRFGDWERKGRCTDF
Sbjct:   95 DEEDWEEMILDGPAGK-EWGGPRRGGKLAEPTRFGDWERKGRCTDF 139
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BLAST of jgi.p|Trimin1|172801 vs. uniprot
Match: A0A225W1X5_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W1X5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.710e-16
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   10 EEEDMEQMFVPGPDGSMEYGGPTRGGKLAEPTRFGDWERKGRCTDF 147
            E++D E M   GP G +EYGGPTRGGKL EPTRFGDWERKGRC+DF
Sbjct:   52 EDDDGEDMVAIGPSG-VEYGGPTRGGKLKEPTRFGDWERKGRCSDF 96
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BLAST of jgi.p|Trimin1|172801 vs. uniprot
Match: A0A662XTG1_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XTG1_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.450e-15
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   16 EDMEQMFVPGPDGSMEYGGPTRGGKLAEPTRFGDWERKGRCTDF 147
            +D+E M   GP G +EYGGPTRGGKL EPTR+GDWERKGRC+DF
Sbjct:   87 DDVEDMVAIGPSG-VEYGGPTRGGKLKEPTRYGDWERKGRCSDF 129
[Close]
BLAST of jgi.p|Trimin1|172801 vs. uniprot
Match: A0A662YDE5_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YDE5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.880e-15
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   19 DMEQMFVPGPDGSMEYGGPTRGGKLAEPTRFGDWERKGRCTDF 147
            D+E M   GP G +EYGGPTRGGKL EPTR+GDWERKGRC+DF
Sbjct:   88 DVEDMVAIGPSG-VEYGGPTRGGKLKEPTRYGDWERKGRCSDF 129
[Close]
BLAST of jgi.p|Trimin1|172801 vs. uniprot
Match: W4GYH8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GYH8_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.240e-15
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   10 EEEDMEQMFVPGPDGSMEYGGPTRGGKLAEPTRFGDWERKGRCTDF 147
            +EEDME M V GP G +E+GGP RGGK  EPTRFGDWE+KGRC DF
Sbjct:   46 DEEDMEDMVVIGPAG-VEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 90
[Close]
BLAST of jgi.p|Trimin1|172801 vs. uniprot
Match: A0A2P4YG81_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YG81_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 8.030e-15
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   25 EQMFVPGPDGSMEYGGPTRGGKLAEPTRFGDWERKGRCTDF 147
            E M   GP G +EYGGPTRGGKL EPTRFGDWERKGRC+DF
Sbjct:   54 EDMVAIGPSG-VEYGGPTRGGKLKEPTRFGDWERKGRCSDF 93
[Close]
BLAST of jgi.p|Trimin1|172801 vs. uniprot
Match: A0A6G0WXB9_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXB9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 8.450e-15
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   10 EEEDMEQMFVPGPDGSMEYGGPTRGGKLAEPTRFGDWERKGRCTDF 147
            +EEDME M V GP G+ E+GGP RGGK  EPTRFGDWE+KGRC DF
Sbjct:   51 DEEDMEDMVVIGPAGT-EWGGPQRGGKYKEPTRFGDWEKKGRCCDF 95
[Close]
BLAST of jgi.p|Trimin1|172801 vs. uniprot
Match: A0A7S2PHY8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PHY8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 8.680e-15
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   10 EEEDMEQMFVP-----GPDGSMEYGGPTRGGKLAEPTRFGDWERKGRCTDF 147
            +E+D E MFV      G     E+GGPTRGGKLAEPTRFGDWERKGRC+DF
Sbjct:   74 DEDDFEDMFVDSHPSLGLGSKKEWGGPTRGGKLAEPTRFGDWERKGRCSDF 124
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172801 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQ12_9STRA4.120e-30100.00Succinate dehydrogenase assembly factor 4, mitocho... [more]
W7TYA2_9STRA5.590e-1875.56Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A7S1U9V4_9STRA1.960e-1676.09Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A225W1X5_9STRA3.710e-1673.91Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A662XTG1_9STRA3.450e-1572.73Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A662YDE5_9STRA4.880e-1574.42Succinate dehydrogenase assembly factor 4, mitocho... [more]
W4GYH8_9STRA5.240e-1571.74Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A2P4YG81_9STRA8.030e-1578.05Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A6G0WXB9_9STRA8.450e-1571.74Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A7S2PHY8_9STRA8.680e-1566.67Succinate dehydrogenase assembly factor 4, mitocho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_96contigContig_96:311960..312109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172801|e_gw1.96.7.1
DescriptionProtein of unknown function (DUF1674)
COG categoryS
Max annot lvl4776|Peronosporales
EggNOG OGs2CZB4@1|root,2S9G4@2759|Eukaryota,3QGEA@4776|Peronosporales
Evalue1.83e-15
Seed ortholog4792.ETI35487
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId173123
TrackFilteredModels1
ProteinId172801
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172801gene_13060Tribonema minus UTEX_B_3156 geneContig_96 311960..312109 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13060_1exon_13060_1Tribonema minus UTEX_B_3156 exonContig_96 311960..312109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13060CDS_13060Tribonema minus UTEX_B_3156 CDSContig_96 311960..312109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172801Trimin1|172801|e_gw1.96.7.1Tribonema minus UTEX_B_3156 polypeptideContig_96 311960..312109 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13060 ID=mRNA_13060|Name=jgi.p|Trimin1|172801|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=150bp|location=Sequence derived from alignment at Contig_96:311960..312109+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACCTCTGCAGAGGAAGAAGACATGGAGCAGATGTTTGTGCCTGGCCCAGA
CGGCAGCATGGAATATGGAGGGCCCACACGAGGTGGCAAATTGGCGGAGC
CAACGCGGTTCGGGGACTGGGAAAGGAAAGGGCGGTGTACAGACTTCTGA
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protein sequence of jgi.p|Trimin1|172801

>Trimin1|172801|e_gw1.96.7.1 ID=Trimin1|172801|e_gw1.96.7.1|Name=jgi.p|Trimin1|172801|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=50bp
TSAEEEDMEQMFVPGPDGSMEYGGPTRGGKLAEPTRFGDWERKGRCTDF*
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mRNA from alignment at Contig_96:311960..312109+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13060 ID=mRNA_13060|Name=jgi.p|Trimin1|172801|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=150bp|location=Sequence derived from alignment at Contig_96:311960..312109+ (Tribonema minus UTEX_B_3156 )
ACCTCTGCAGAGGAAGAAGACATGGAGCAGATGTTTGTGCCTGGCCCAGA
CGGCAGCATGGAATATGGAGGGCCCACACGAGGTGGCAAATTGGCGGAGC
CAACGCGGTTCGGGGACTGGGAAAGGAAAGGGCGGTGTACAGACTTCTGA
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Coding sequence (CDS) from alignment at Contig_96:311960..312109+

>mRNA_13060 ID=mRNA_13060|Name=jgi.p|Trimin1|172801|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=150bp|location=Sequence derived from alignment at Contig_96:311960..312109+ (Tribonema minus UTEX_B_3156 )
ACCTCTGCAGAGGAAGAAGACATGGAGCAGATGTTTGTGCCTGGCCCAGA
CGGCAGCATGGAATATGGAGGGCCCACACGAGGTGGCAAATTGGCGGAGC
CAACGCGGTTCGGGGACTGGGAAAGGAAAGGGCGGTGTACAGACTTCTGA
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