mRNA_14673 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351643
Unique NamemRNA_14673
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351643 vs. uniprot
Match: A0A835YJV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJV2_9STRA)

HSP 1 Score: 559 bits (1441), Expect = 1.790e-200
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 1 
Query:    1 MSEKLRNEVNTVYRSASQSGLPRSVVAMRLTKAANLYARAAGASLNPPELASALKTSLRIGVVRVACAVLIYSFGLALRDICDVLAARRLDGQDIAQFAHAAAAALEALHGAASLGARLARPRQWCDTVDTSLARVHATIARVFVPDIERCNEETAAENADENDGGSGGDVRFCYGDTAALRAALVMLEKPGGVSYGGDGVAAAAAADVAAHVEIALGTLAIDESIGRLCIGEASEGEDFQDYARALSLAADCEQSFSRAAERLRRAARAAAEGVDALDGLMVLALEEAQYGVEDAVRQRQR 906
            MSEKLRNEVNTVYRSASQSGLPRSVVAMRLTKAANLYARAAGASLNPPELASALKTSLRIGVVRVACAVLIYSFGLALRDICDVLAARRLDGQDIAQFAHAAAAALEALHGAASLGARLARPRQWCDTVDTSLARVHATIARVFVPDIERCNEETAAENADENDGGSGGDVRFCYGDTAALRAALVMLEKPGGVSYGGDGVAAAAAADVAAHVEIALGTLAIDESIGRLCIGEASEGEDFQDYARALSLAADCEQSFSRAAERLRRAARAAAEGVDALDGLMVLALEEAQYGVEDAVRQRQR
Sbjct:    1 MSEKLRNEVNTVYRSASQSGLPRSVVAMRLTKAANLYARAAGASLNPPELASALKTSLRIGVVRVACAVLIYSFGLALRDICDVLAARRLDGQDIAQFAHAAAAALEALHGAASLGARLARPRQWCDTVDTSLARVHATIARVFVPDIERCNEETAAENADENDGGSGGDVRFCYGDTAALRAALVMLEKPGGVSYGGDGVAAAAAADVAAHVEIALGTLAIDESIGRLCIGEASEGEDFQDYARALSLAADCEQSFSRAAERLRRAARAAAEGVDALDGLMVLALEEAQYGVEDAVRQRQR 302
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351643 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YJV2_9STRA1.790e-200100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_95contigContig_95:436270..440813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351643|estExt_Genemark1.C_Ctg_950061
Hectar predicted targeting categoryother localisation
TranscriptId351965
TrackFilteredModels1
ProteinId351643
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351643gene_14673Tribonema minus UTEX_B_3156 geneContig_95 436270..440813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351643Trimin1|351643|estExt_Genemark1.C_Ctg_950061Tribonema minus UTEX_B_3156 polypeptideContig_95 436297..440813 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14673_7exon_14673_7Tribonema minus UTEX_B_3156 exonContig_95 436270..436526 -
exon_14673_6exon_14673_6Tribonema minus UTEX_B_3156 exonContig_95 437186..437480 -
exon_14673_5exon_14673_5Tribonema minus UTEX_B_3156 exonContig_95 438112..438273 -
exon_14673_4exon_14673_4Tribonema minus UTEX_B_3156 exonContig_95 439091..439142 -
exon_14673_3exon_14673_3Tribonema minus UTEX_B_3156 exonContig_95 439741..439832 -
exon_14673_2exon_14673_2Tribonema minus UTEX_B_3156 exonContig_95 440196..440268 -
exon_14673_1exon_14673_1Tribonema minus UTEX_B_3156 exonContig_95 440809..440813 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14673UTR3_14673Tribonema minus UTEX_B_3156 three_prime_UTRContig_95 436270..436296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14673CDS_14673Tribonema minus UTEX_B_3156 CDSContig_95 440809..440813 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14673 ID=mRNA_14673|Name=jgi.p|Trimin1|351643|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=936bp|location=Sequence derived from alignment at Contig_95:436270..440813- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGAGAAGCTGCGCAATGAAGTCAACACCGTCTATCGCTCTGCGTC
GCAAAGCGGCCTGCCTCGATCTGTCGTGGCCATGCGCCTGACGAAGGCCG
CCAATCTCTACGCACGTGCCGCCGGCGCCTCCCTGAACCCCCCGGAGCTG
GCGAGTGCCCTCAAAACCAGTTTAAGAATTGGCGTTGTGCGAGTTGCGTG
CGCTGTTCTCATTTACAGCTTTGGTCTGGCGCTGCGTGACATCTGTGATG
TGCTGGCGGCGCGGCGCCTGGACGGACAGGACATTGCTCAGTTCGCGCAC
GCAGCAGCGGCTGCGCTGGAGGCGCTGCACGGCGCCGCGTCGTTGGGCGC
GCGCCTGGCGCGCCCACGTCAGTGGTGCGATACGGTGGACACATCGCTCG
CGCGTGTGCACGCCACCATTGCGCGCGTATTCGTCCCCGACATTGAGCGC
TGCAACGAGGAGACCGCCGCCGAAAATGCTGATGAAAACGACGGCGGGAG
CGGCGGCGATGTCCGCTTCTGCTATGGCGACACTGCTGCGCTGCGCGCGG
CGCTGGTGATGCTGGAGAAGCCTGGCGGGGTGTCGTATGGCGGCGACGGC
GTTGCGGCTGCTGCCGCTGCGGACGTGGCGGCGCACGTGGAGATTGCGCT
GGGCACTCTGGCCATCGACGAGTCCATAGGGCGTCTGTGCATCGGAGAGG
CGAGCGAAGGCGAGGACTTCCAGGACTACGCCAGGGCGCTGTCGCTTGCG
GCGGACTGCGAGCAGAGCTTCTCACGCGCTGCTGAGCGGCTGAGGCGTGC
TGCGCGCGCAGCAGCGGAGGGCGTGGATGCTTTGGACGGGCTGATGGTGC
TGGCGCTGGAGGAGGCGCAGTACGGCGTGGAGGATGCCGTGCGCCAGAGG
CAGAGGTGATGACATGACGCAGGGAAATGATCGCTG
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protein sequence of jgi.p|Trimin1|351643

>Trimin1|351643|estExt_Genemark1.C_Ctg_950061 ID=Trimin1|351643|estExt_Genemark1.C_Ctg_950061|Name=jgi.p|Trimin1|351643|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=303bp
MSEKLRNEVNTVYRSASQSGLPRSVVAMRLTKAANLYARAAGASLNPPEL
ASALKTSLRIGVVRVACAVLIYSFGLALRDICDVLAARRLDGQDIAQFAH
AAAAALEALHGAASLGARLARPRQWCDTVDTSLARVHATIARVFVPDIER
CNEETAAENADENDGGSGGDVRFCYGDTAALRAALVMLEKPGGVSYGGDG
VAAAAAADVAAHVEIALGTLAIDESIGRLCIGEASEGEDFQDYARALSLA
ADCEQSFSRAAERLRRAARAAAEGVDALDGLMVLALEEAQYGVEDAVRQR
QR*
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mRNA from alignment at Contig_95:436270..440813-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14673 ID=mRNA_14673|Name=jgi.p|Trimin1|351643|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4544bp|location=Sequence derived from alignment at Contig_95:436270..440813- (Tribonema minus UTEX_B_3156 )
ATGAGGTCAGGACTTGCAAAGGGCTCTGAAACTGTGAACGGTATCGAATG
CTGATGCATATATGTGCCAGCAGGCCCTGCGCACATTGTAATCTATAGCA
GGCGGTGTTGCTGGTGCCACCGTGCTCTCTTTATTGCTGGCAAAGCAGTG
CCTACGCATGAAATGACAGCTGCATGAGTTGTTGTCGATGGCAATGCACT
TGCGAGGCTCTGAGTTGATTCAAAGCTCATTTGTCTGTGTCGCGCCTTCA
ATATGTACCCGTTGCACTGCACTCGCGTGAAAACGGCAACTCCACTGTCG
GTTCACAAAAGCCATTGCCTTGCTGCAACCAATGCTACCAGAAACTGCTG
TTTAAAATGCACACAACTCAATCACACCGGATGTCGGCTGTGTTACCTAC
CCATGCTGCCATGCTTGACCAGCCAGTCCATCCACTCTTGCCGTCTGTAC
TGCTCTTGCACTGCTGTTGTACTGCTCTCATTAATGCTCCGTTCCGCAGC
ACGCGCCCCCGCTGCCACCGTGCCGCCGCCCCCGCCAACCCCCAGCGAGA
AGCTGCGCAATGAAGTCAACACCGTCTATCGCTCTGCGTCGCAAAGCGGC
CTGCCTCGATCTGTCGTGGTAAGTGGCATACAAGAGCACGCGCAGTTTTT
TACCAACGATAAGAACTGTCCGCCACAAGTTTAAATGGGCTCAGTTGTGA
AACATGATTACAACGAAAATACTTCTGGAGAAAAGAGTGTCTGATGTGGG
TAGGTATACGCTGGTGCCTGAAGCGTCCCCATCCGGTGCTCAACTTCAAG
TTGCAGAGCGTGGAACACAACGACCATTCACCACAAGACAGCACCATGTA
CTCCGAAGAAAAACGAGATTGTATGCAGCGTCAGAAGCACATGAAAAGCT
GTTGGCTGGGTTCAACGTACAGTAGATATAAATGATAATTTCATATATGT
CACCTGTGTTTCCTGGTTCTGCTGCGCACAGGCCATGCGCCTGACGAAGG
CCGCCAATCTCTACGCACGTGCCGCCGGCGCCTCCCTGAACCCCCCGGAG
CTGGCGAGTGCCCTCAAAACCAGGTGACGCACCAACTTCAATAGCATTAA
CTTCAACAACAGCAGCTTGAGCATGTCACAGTTGATAATCAGCGAGCTCA
TTGCGCGTTGAGGCAGCAGCTGCTGCTGCTGAGTGCCCAGAGATGTCATG
GCTATCCCAGAATCACCTTGGGTAGGATGACGCAGTCCTCAAGTACCAAG
CTTGAACACTTGCGTAGTTCAGCCCTCAAAACAAATGTGCTAAGGAGCAT
ATACCGGGTAATTTACCCACATCAGTTCACTAGCAGACATAATGCACAAC
TGATCTTTCACATATGACATGCACAGTACATCACTCACAACCTTTGGGCG
CAATATGCAGGACTATTCAACATCCTTATGCCCTCTCTTCCAGTGCACGC
CGGTGATTGCTGCGCGCGTGCGCGCGGTGTTCCAAAGTTCGTTCACAAAG
AATGCGGCTGCTTACTGTATGTATGCTGAAGCAGCGTTACATGGCATAAA
GTCAAAGCTACCGTGATCTGCGCTCAGGCCATAGTGCCAGCTCCCTAGCT
TTCCAATTGCTGATAGCATGATTCGGCCCATAGGACTGGTGACACACTGC
TCTTTGGCTCTCCCCCTGCAGTTTAAGAATTGGCGTTGTGCGAGTTGCGT
GCGCTGTTCTCATTTACAGCTTTGTGAGTTCATATCAGGAGGCACGATGT
AGTGAACCAAAGAGTGTTGCCAATGATTCACCGTCATGTTGTTCTTGCTG
ACTCGTCATCGTTCAATCATTCAAATATCATCTGCTCAGCGGTACAGAGC
ACCTAGCGTCACGCGAACTTCTAGGTGTGTGATTTCTTCATCAATGGGAG
GTTGATATTCGACCATGATGCCATCAATCTTATTATAAGCCCTTGCGCCG
AAGGCCTGTGCCTGGGGCTTCCATTATTCGCAGTGGTAATGAGAAGAGCT
GAATGGATGGCATCATTACAGAAAGGCGCCCATGATCAGCGAACTAATAA
GCAAACTGCAAACTGCATGCGATCCTATTGAAACCCCCAGTCTCACATGT
GATCATGCTTGCCCTTGTGCCGCGCTTCAAATGCAACTTGATTGTCTGGG
AGAGTGTTGCTGCACTGAGCAATGATTTCCAACTTTGACAGTATCCTTTC
CTTGGAACGCATGATCATCATCTTTCAGTTCTAGATATTTGCGACCTCAA
GATGGCATCCTACTTCATTGTATAACATGTTGTCTGTTTGTCACAGACAA
ATCTTTCGTTGAAGTTTATATGATTCAAAATACACGCTTCGATGTGCATA
TTTATACACATGTGCTTACATGTACTTTGATTCTGTGCTTGCTTCGAGCG
CAAGCAAGCCCAATTGGCGGACAATGTAGCTTGCATGTACTCATTCCGCA
ACCCATTGGCCAACAACACAACAAATGGCAAAAATCCTTCGTTATCAACC
TGGCTGCAACAGGTGCCCCCCTTTCCCTGCACCTACGTAGGGTCTGGCGC
TGCGTGACATCTGTGATGTGCTGGCGGCGCGGCGCCTGGACGGACAGGAC
ATTGCTCAGTTCGCGCACGCAGCAGCGGCTGCGCTGGAGGCGCTGCACGG
CGCCGCGTCGTTGGGCGCGCGCCTGGCGCGCCCACGTCAGTGGTGCGATA
CGGTGCGTTCGCATTCTTGCAAGTGCAGCATGCAGCGCAGCGCCCCTGCT
CTGAACCAACAACAGGGCAAATTTCTGGCTTGTTCTCACAGCATGCACAA
AGCAGTATCGCGCGCCCGCAGAAGTGGCGCGAGACGGCGCGTTTTTCACG
CTCTTGCACTTGCCCGAGGCACAGTATTCGTTGTTGGCTTTTGCAAAGCA
ATTGATGGCTGCTTCCAATTGCAGCGCAGCACCGTTAAGCAACATGAAGG
CGTTTGGCTGGTTGCTACTTTAAATAGAGAGCCGCACTGGGTGCGCGTCG
CGCACGCTCGCGGCTGTGGTGTGCAACGATGTGTTCGCGCTGTTGCGCTG
ACCTGAGGCACAGTGTTGTTGGCTTTAGTGAAGTGGATAGAGGCGCTTCC
AGCAGCAGCGCGGCGCGCCGCTTTGAAACGATAATAGTTCAACAGTACCC
ACCACCCTTGAAACAACTGCCGTGGAGGTGCTGCGCTGAGCTGGGAGTGA
GGCAAGGTTCAGACTCAAAAAAAAGATTCTGCCCCCCCCCTACTAGAAGA
GATGATGCTAGAAAATGATGCTCATGCCCCTCGTGCTACAGCAGCTGAGC
ACTGACGCCAGCCCCCCTGTTTCCCCCTTTCAGGTGGACACATCGCTCGC
GCGTGTGCACGCCACCATTGCGCGCGTATTCGTCCCCGACATTGAGCGCT
GCAACGAGGAGACCGCCGCCGAAAATGCTGATGAAAACGACGGCGGGAGC
GGCGGCGATGTCCGCTTCTGCTATGGCGACACTGCTGCGCTGCGCGCGGC
GCTGGTGATGCTGGAGAAGCCTGGCGGGGTGTCGTATGGCGGCGACGGCG
TTGCGGCTGCTGCCGCTGCGGACGTGGCGGCGCACGTGGAGATTGCGCTG
GGCACTCTGGCCATCGACGAGTCCATAGGTATGGACGGTCACGTTGTTGC
ATCGCAGTGTGGTGCCAGGCGGGGTTACAGCGCAAGCAATGGGCGTGTTC
TGATGGTCAGCTCACTTTCAGTGCTGATGTCATCGCATCGCAGTGTGATG
CCATGCGAGGCACCGGGTTGGCAATGCTTTTTTTTGGGTGGTGAGCTCAC
ATTCAGTGCTGATGTCATCGCTTGCAGTAGGATGCCATGCCGGGCACAGC
AGCGTAGGCTGCGGGTTTATGCTGGTGGTGAGCTGACTTTGAGTGCTGCA
GTGGTGAAGAGCATGTATGCATGTATTCCGAGGCAGGCATCCATGCTGCT
GCCATGTACAGAATATGATATTGTGTTCATTCTTCATTGATGTTCGCATG
CCTCGCTTGTCCCCACCCTGCTGTGCATTGTAGAGGCTACAGTGGCGTGG
ACTTTCAGGACCATTCCAGCGCACTGTTGCTGAGCATGTACAGTATGCTT
ATAAATATGCACACACCAGTTCGCTATATGTGTACTGTCGCTGCATGCAT
CCGTACCTTGTAGTGCACAATAGTACATGTGATGACAATACCTACTATCA
GTGTATATGTAGCTCCTCGATGGCCAAAAACACAAATGGTGCAATACCTC
ATCTTTCCGCGCCACCTTGCTCAACGCTTGTCCCCAGGGCGTCTGTGCAT
CGGAGAGGCGAGCGAAGGCGAGGACTTCCAGGACTACGCCAGGGCGCTGT
CGCTTGCGGCGGACTGCGAGCAGAGCTTCTCACGCGCTGCTGAGCGGCTG
AGGCGTGCTGCGCGCGCAGCAGCGGAGGGCGTGGATGCTTTGGACGGGCT
GATGGTGCTGGCGCTGGAGGAGGCGCAGTACGGCGTGGAGGATGCCGTGC
GCCAGAGGCAGAGGTGATGACATGACGCAGGGAAATGATCGCTG
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Coding sequence (CDS) from alignment at Contig_95:436270..440813-

>mRNA_14673 ID=mRNA_14673|Name=jgi.p|Trimin1|351643|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=909bp|location=Sequence derived from alignment at Contig_95:436270..440813- (Tribonema minus UTEX_B_3156 )
ATGAGCGAGAAGCTGCGCAATGAAGTCAACACCGTCTATCGCTCTGCGTC
GCAAAGCGGCCTGCCTCGATCTGTCGTGGCCATGCGCCTGACGAAGGCCG
CCAATCTCTACGCACGTGCCGCCGGCGCCTCCCTGAACCCCCCGGAGCTG
GCGAGTGCCCTCAAAACCAGTTTAAGAATTGGCGTTGTGCGAGTTGCGTG
CGCTGTTCTCATTTACAGCTTTGGTCTGGCGCTGCGTGACATCTGTGATG
TGCTGGCGGCGCGGCGCCTGGACGGACAGGACATTGCTCAGTTCGCGCAC
GCAGCAGCGGCTGCGCTGGAGGCGCTGCACGGCGCCGCGTCGTTGGGCGC
GCGCCTGGCGCGCCCACGTCAGTGGTGCGATACGGTGGACACATCGCTCG
CGCGTGTGCACGCCACCATTGCGCGCGTATTCGTCCCCGACATTGAGCGC
TGCAACGAGGAGACCGCCGCCGAAAATGCTGATGAAAACGACGGCGGGAG
CGGCGGCGATGTCCGCTTCTGCTATGGCGACACTGCTGCGCTGCGCGCGG
CGCTGGTGATGCTGGAGAAGCCTGGCGGGGTGTCGTATGGCGGCGACGGC
GTTGCGGCTGCTGCCGCTGCGGACGTGGCGGCGCACGTGGAGATTGCGCT
GGGCACTCTGGCCATCGACGAGTCCATAGGGCGTCTGTGCATCGGAGAGG
CGAGCGAAGGCGAGGACTTCCAGGACTACGCCAGGGCGCTGTCGCTTGCG
GCGGACTGCGAGCAGAGCTTCTCACGCGCTGCTGAGCGGCTGAGGCGTGC
TGCGCGCGCAGCAGCGGAGGGCGTGGATGCTTTGGACGGGCTGATGGTGC
TGGCGCTGGAGGAGGCGCAGTACGGCGTGGAGGATGCCGTGCGCCAGAGG
CAGAGGTGA
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