mRNA_5033 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155798
Unique NamemRNA_5033
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|155798 vs. uniprot
Match: A0A835ZE32_9STRA (DUF4379 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE32_9STRA)

HSP 1 Score: 337 bits (865), Expect = 7.910e-118
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1
Query:    1 HHQECVYEYKKARPVKLSLADARPDIAELWDYTLNTGKTPETISYGLGEPVNWKCPETSCSQQCPHSWMATVNSMTSRTTDSNGCPWCGHKKVCEHESLAALRPEIAAMLHPTLNPGVDPLTISVKSNKLFFFRCDNRRNDCTCDEEHVWEA 456
            HHQECVYEYKKARPVKLSLADARPDIAELWDYTLNTGKTPETISYGLGEPVNWKCPETSCSQQCPHSWMATVNSMTSRTTDSNGCPWCGHKKVCEHESLAALRPEIAAMLHPTLNPGVDPLTISVKSNKLFFFRCDNRRNDCTCDEEHVWEA
Sbjct:    1 HHQECVYEYKKARPVKLSLADARPDIAELWDYTLNTGKTPETISYGLGEPVNWKCPETSCSQQCPHSWMATVNSMTSRTTDSNGCPWCGHKKVCEHESLAALRPEIAAMLHPTLNPGVDPLTISVKSNKLFFFRCDNRRNDCTCDEEHVWEA 152          
BLAST of jgi.p|Trimin1|155798 vs. uniprot
Match: Q7UGX1_RHOBA (Uncharacterized protein n=2 Tax=Rhodopirellula baltica TaxID=265606 RepID=Q7UGX1_RHOBA)

HSP 1 Score: 82.4 bits (202), Expect = 1.960e-15
Identity = 45/135 (33.33%), Postives = 66/135 (48.89%), Query Frame = 1
Query:   55 LADARPDIAELWDYTLNTGKTPETISYGLGEPVNWKCPETSCSQQCPHSWMATVNSMTSRTTDSNGCPWCGHKKVCE-HESLAALRPEIAAMLHPTLNPGVDPLTISVKSNKLFFFRCDNRRNDCTCDEEHVWEA 456
            L +  P++ + W  T N   TPE++S+G  E V W+CP+        H W   +  +  R      C     + V    ES     PE+ A  HPTLNPG+DP+T+S  S+K   ++C N       + EHVW+A
Sbjct:  236 LNETAPELLDYWHPTKNGTTTPESVSHGSKEKVWWQCPKDPS-----HEWQDPIKKVHGRQRKCLMCVSPMRQGVVRAEESFGHTYPELLAEWHPTLNPGIDPMTVSPGSSKKMMWQCSN-------EPEHVWQA 358          
BLAST of jgi.p|Trimin1|155798 vs. uniprot
Match: A0A835YQL5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQL5_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.610e-15
Identity = 49/138 (35.51%), Postives = 67/138 (48.55%), Query Frame = 1
Query:   52 SLADARPDIAELWDYTLNTGKTPETISYGLGEPVNWKCPETSCSQQCPHSWMATVNSMTSRTTDSNGCPWC---GHKKVCEHESLAALRPEIAAMLHPTLNPGVDPLTISVKSNKLFFFRCDNRRNDCTCDEEHVWEA 456
            SLA  RP +A   D     G     I  G    + W     +CS    H W A V S   R +D  GCP C   G+  +C  +SL A++P +AA +HPTLN  + P  I+  S ++  ++C N +    C  EHVWEA
Sbjct:  142 SLAALRPGLAAQVDVARVGGLDLTKIGVGSARMLPWS---HTCSCGRVHRWEAIVQSRA-RVSDDQGCPICSGKGNHPICACKSLLAVKPHVAAQMHPTLNGELTPDRITPASGQMVTWKCQNSQ----CKHEHVWEA 271          
BLAST of jgi.p|Trimin1|155798 vs. uniprot
Match: A0A2G1W4H2_9BACT (Uncharacterized protein n=1 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1W4H2_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 6.420e-15
Identity = 46/138 (33.33%), Postives = 65/138 (47.10%), Query Frame = 1
Query:   55 LADARPDIAELWDYTLNTGKTPETISYGLGEPVNWKCPETSCSQQCPHSWMATVNSMTSRTTDSNGCPWC----GHKKVCEHESLAALRPEIAAMLHPTLNPGVDPLTISVKSNKLFFFRCDNRRNDCTCDEEHVWEA 456
            L +  P++ + W  T N   TPET+S+G    V W+CP+        H W   +  +  R      C  C        V   ES+    P + A  HPTLNPGVDP+T+S  S++   ++C N       D EHVW+A
Sbjct:  236 LNETAPELLDYWHPTKNGATTPETVSHGSKAKVWWQCPKDPT-----HEWQDPIKKVHGR---QRKCLMCVSPIKQGVVRAEESIGHAYPALLAEWHPTLNPGVDPMTVSPGSSRKVMWQCSN-------DPEHVWKA 358          
BLAST of jgi.p|Trimin1|155798 vs. uniprot
Match: A0A3D1LAS6_9FIRM (Uncharacterized protein (Fragment) n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A3D1LAS6_9FIRM)

HSP 1 Score: 74.7 bits (182), Expect = 4.400e-13
Identity = 42/112 (37.50%), Postives = 56/112 (50.00%), Query Frame = 1
Query:   55 LADARPDIAELWDYTLNTGKTPETISYGLGEPVNWKCPETSCSQQCPHSWMATVNSMTSRTTDSNGCPWCGHKKVCE-HESLAALRPEIAAMLHPTLNPGVDPLTISVKSNK 387
            LA   P +A  W  T N   TP  +  G  + V W+C          H W A +     RT  +NGCP+CG+KKV      LA++ PEIAA  HPTLN  + P  ++  SN+
Sbjct:  198 LATLFPAVAAEWHPTKNGNLTPSQVVSGSHQTVWWRC-------SLGHEWRAEI---VDRTRGTNGCPYCGNKKVLAGFNDLASIEPEIAAEWHPTLNGALTPEMVTAGSNR 299          
BLAST of jgi.p|Trimin1|155798 vs. uniprot
Match: A0A3G4ZTL2_9VIRU (Uncharacterized protein n=1 Tax=Barrevirus sp. TaxID=2487763 RepID=A0A3G4ZTL2_9VIRU)

HSP 1 Score: 74.7 bits (182), Expect = 8.740e-13
Identity = 35/102 (34.31%), Postives = 57/102 (55.88%), Query Frame = 1
Query:  157 WKCPETSCSQQCPHSWMATVNSMTSRTTDSNGCPWCG--HKKVCEHESLAALRPEIAAMLHPTLNPGVDPLTISVKSNKLFFFRCDNRRNDCTCDEEHVWEA 456
            W C +++C   CPH W +T+N+ T +  +  GCP+C     K+C H SLA L P++        N G+DP T +  S+K+  ++C N    C+ D +H W++
Sbjct:   52 WICNKSACG--CPHEWQSTINNRTKK--NPTGCPYCSIPASKICYHNSLACLFPDLMDQWDYDKNTGIDPNTTAATSSKMVSWKCPNT---CSIDCKHEWDS 146          
BLAST of jgi.p|Trimin1|155798 vs. uniprot
Match: A0A481Z7E9_9VIRU (Restriction endonuclease n=1 Tax=Pithovirus LCPAC304 TaxID=2506594 RepID=A0A481Z7E9_9VIRU)

HSP 1 Score: 72.0 bits (175), Expect = 7.650e-12
Identity = 44/127 (34.65%), Postives = 62/127 (48.82%), Query Frame = 1
Query:   76 IAELWDYTLNTGKTPETISYGLGEPVNWKCPETSCSQQCPHSWMATVNSMTSRTTDSNGCPWCGHKKVCEHESLAALRPEIAAMLHPTLNPGVDPLTISVKSNKLFFFRCDNRRNDCTCDEEHVWEA 456
            I E WDY  N  K PE  S G  + V WKC   +  + C H W AT+++   RT +  GCP+C ++K+C H +L A  P++        N    P   S  + K  ++ C N    C    EH+WEA
Sbjct:  176 ICEEWDYDRNK-KGPEEYSPGSHKKVWWKC--LNPDRCCEHEWEATISN---RTLNKRGCPYCCNQKLCPHNTLLAKNPDLCKEWDYKRNEK-GPECYSSHTTKKAWWVCSNPDKCC----EHIWEA 291          
BLAST of jgi.p|Trimin1|155798 vs. uniprot
Match: A0A378IC90_9GAMM (Uncharacterized protein n=3 Tax=Legionella TaxID=445 RepID=A0A378IC90_9GAMM)

HSP 1 Score: 70.5 bits (171), Expect = 2.880e-11
Identity = 40/135 (29.63%), Postives = 63/135 (46.67%), Query Frame = 1
Query:   52 SLADARPDIAELWDYTLNTGKTPETISYGLGEPVNWKCPETSCSQQCPHSWMATVNSMTSRTTDSNGCPWCGHKKVCEHESLAALRPEIAAMLHPTLNPGVDPLTISVKSNKLFFFRCDNRRNDCTCDEEHVWEA 456
            + A   P++ + +D   N    PE ++    + V WKC +        HSW AT+ + T R   +N CP+C ++K+C   SLA LRP+IA   HP+ N  + P  +        ++         TC   H W+A
Sbjct:  180 NFATEYPELLKEFDLIKNKNLKPENLTPRAKQKVWWKCLKG-------HSWQATITNRT-RKQYNNSCPYCTNRKICNDNSLAQLRPDIAQDWHPSKNQPLTPHDVIAGGGTKVWW---------TCKHGHDWQA 297          
BLAST of jgi.p|Trimin1|155798 vs. uniprot
Match: UPI001374AF25 (zinc-ribbon domain-containing protein n=4 Tax=Legionella pneumophila TaxID=446 RepID=UPI001374AF25)

HSP 1 Score: 69.7 bits (169), Expect = 5.350e-11
Identity = 42/136 (30.88%), Postives = 64/136 (47.06%), Query Frame = 1
Query:   52 SLADARPDIAELWDYTLNTGKTPETISYGLGEPVNWKCPETSCSQQCPHSWMATVNSMTSRTTDSNGCPWCGHKKVCEHESLAALRPEIAAMLHPTLNPGVDPL-TISVKSNKLFFFRCDNRRNDCTCDEEHVWEA 456
            + A   P++ +  D   N    PE ++    + V WKC       Q  HSW AT+ + T R   +N CP+C ++K+C+  SLA LRP+IA   HP  N  + P   I+    K+++           C   H W+A
Sbjct:  180 NFATEYPELLKELDLIKNKNLDPENLTPRANQKVWWKC-------QKGHSWQATITNRT-RKQYNNSCPYCTNRKLCDENSLARLRPDIAQDWHPAKNETLTPNDVIAGGGTKVWWI----------CKHGHDWQA 297          
BLAST of jgi.p|Trimin1|155798 vs. uniprot
Match: A0A1M4ZQS8_9CLOT (Probable Zinc-ribbon domain-containing protein n=2 Tax=Lactonifactor TaxID=420345 RepID=A0A1M4ZQS8_9CLOT)

HSP 1 Score: 68.9 bits (167), Expect = 9.560e-11
Identity = 45/134 (33.58%), Postives = 65/134 (48.51%), Query Frame = 1
Query:    4 HQECVYEYKKARPVKLSLADARPDIAELWDYTLNTGKTPETISYGLGEPVNWKCPETSCSQQCPHSWMATVNSMTSRTTDSNGCPWCGHKKVCEHESLAALRPEIAAMLHPTLNPGVDPLTISVKSNKLFFFRC 405
            H E   +Y   R  K SLA   P +A  W       + P+T+  G G+ V WKCP+      C   + A+V    +RT   +GC +C + KVC+  SLAA RPEIA   +   N  + P  +   + K  ++RC
Sbjct:  355 HWEIERKYYHERK-KRSLAVRYPQLAREWSQ--QNKEDPDTVPAGSGKKVWWKCPD------CKREYEASV---INRTQHGSGCSYCSNYKVCDSNSLAARRPEIAEEWNYEKNGSLTPEQVLPGTEKNVWWRC 476          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155798 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A835ZE32_9STRA7.910e-118100.00DUF4379 domain-containing protein (Fragment) n=1 T... [more]
Q7UGX1_RHOBA1.960e-1533.33Uncharacterized protein n=2 Tax=Rhodopirellula bal... [more]
A0A835YQL5_9STRA4.610e-1535.51Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A2G1W4H2_9BACT6.420e-1533.33Uncharacterized protein n=1 Tax=Rhodopirellula bah... [more]
A0A3D1LAS6_9FIRM4.400e-1337.50Uncharacterized protein (Fragment) n=1 Tax=Clostri... [more]
A0A3G4ZTL2_9VIRU8.740e-1334.31Uncharacterized protein n=1 Tax=Barrevirus sp. Tax... [more]
A0A481Z7E9_9VIRU7.650e-1234.65Restriction endonuclease n=1 Tax=Pithovirus LCPAC3... [more]
A0A378IC90_9GAMM2.880e-1129.63Uncharacterized protein n=3 Tax=Legionella TaxID=4... [more]
UPI001374AF255.350e-1130.88zinc-ribbon domain-containing protein n=4 Tax=Legi... [more]
A0A1M4ZQS8_9CLOT9.560e-1133.58Probable Zinc-ribbon domain-containing protein n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:142002..142457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155798|gw1.117.136.1
Descriptionhelicase activity
COG categoryL
Max annot lvl2|Bacteria
EggNOG OGsCOG0553@1|root,COG0553@2|Bacteria
Evalue3.28e-17
Seed ortholog1501268.EW14_1866
Hectar predicted targeting categoryother localisation
TranscriptId156120
TrackFilteredModels1
ProteinId155798
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155798gene_5033Tribonema minus UTEX_B_3156 geneContig_117 142002..142457 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5033_1exon_5033_1Tribonema minus UTEX_B_3156 exonContig_117 142002..142457 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5033CDS_5033Tribonema minus UTEX_B_3156 CDSContig_117 142002..142457 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155798Trimin1|155798|gw1.117.136.1Tribonema minus UTEX_B_3156 polypeptideContig_117 142002..142457 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5033 ID=mRNA_5033|Name=jgi.p|Trimin1|155798|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=456bp|location=Sequence derived from alignment at Contig_117:142002..142457- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACCATCAGGAATGCGTATACGAATACAAAAAAGCAAGGCCGGTGAAGCT
TTCCTTGGCCGACGCTCGACCGGACATCGCTGAGCTGTGGGACTACACAC
TCAATACAGGCAAGACCCCAGAGACCATATCATACGGATTGGGGGAACCA
GTCAACTGGAAATGTCCCGAGACATCCTGTTCTCAACAGTGTCCTCATAG
CTGGATGGCAACCGTCAACAGCATGACCAGCCGCACCACTGATTCGAACG
GGTGTCCCTGGTGTGGTCATAAGAAAGTATGCGAGCACGAATCTCTAGCG
GCTCTCAGGCCTGAAATCGCTGCAATGCTTCACCCGACTCTCAATCCTGG
GGTGGATCCCTTGACGATATCGGTAAAGTCAAACAAACTGTTTTTCTTCC
GTTGTGACAATCGGCGCAACGATTGCACATGTGATGAGGAGCACGTGTGG
GAGGCC
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protein sequence of jgi.p|Trimin1|155798

>Trimin1|155798|gw1.117.136.1 ID=Trimin1|155798|gw1.117.136.1|Name=jgi.p|Trimin1|155798|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=152bp
HHQECVYEYKKARPVKLSLADARPDIAELWDYTLNTGKTPETISYGLGEP
VNWKCPETSCSQQCPHSWMATVNSMTSRTTDSNGCPWCGHKKVCEHESLA
ALRPEIAAMLHPTLNPGVDPLTISVKSNKLFFFRCDNRRNDCTCDEEHVW
EA
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mRNA from alignment at Contig_117:142002..142457-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5033 ID=mRNA_5033|Name=jgi.p|Trimin1|155798|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=456bp|location=Sequence derived from alignment at Contig_117:142002..142457- (Tribonema minus UTEX_B_3156 )
CACCATCAGGAATGCGTATACGAATACAAAAAAGCAAGGCCGGTGAAGCT TTCCTTGGCCGACGCTCGACCGGACATCGCTGAGCTGTGGGACTACACAC TCAATACAGGCAAGACCCCAGAGACCATATCATACGGATTGGGGGAACCA GTCAACTGGAAATGTCCCGAGACATCCTGTTCTCAACAGTGTCCTCATAG CTGGATGGCAACCGTCAACAGCATGACCAGCCGCACCACTGATTCGAACG GGTGTCCCTGGTGTGGTCATAAGAAAGTATGCGAGCACGAATCTCTAGCG GCTCTCAGGCCTGAAATCGCTGCAATGCTTCACCCGACTCTCAATCCTGG GGTGGATCCCTTGACGATATCGGTAAAGTCAAACAAACTGTTTTTCTTCC GTTGTGACAATCGGCGCAACGATTGCACATGTGATGAGGAGCACGTGTGG GAGGCC
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Coding sequence (CDS) from alignment at Contig_117:142002..142457-

>mRNA_5033 ID=mRNA_5033|Name=jgi.p|Trimin1|155798|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=456bp|location=Sequence derived from alignment at Contig_117:142002..142457- (Tribonema minus UTEX_B_3156 )
CACCATCAGGAATGCGTATACGAATACAAAAAAGCAAGGCCGGTGAAGCT
TTCCTTGGCCGACGCTCGACCGGACATCGCTGAGCTGTGGGACTACACAC
TCAATACAGGCAAGACCCCAGAGACCATATCATACGGATTGGGGGAACCA
GTCAACTGGAAATGTCCCGAGACATCCTGTTCTCAACAGTGTCCTCATAG
CTGGATGGCAACCGTCAACAGCATGACCAGCCGCACCACTGATTCGAACG
GGTGTCCCTGGTGTGGTCATAAGAAAGTATGCGAGCACGAATCTCTAGCG
GCTCTCAGGCCTGAAATCGCTGCAATGCTTCACCCGACTCTCAATCCTGG
GGTGGATCCCTTGACGATATCGGTAAAGTCAAACAAACTGTTTTTCTTCC
GTTGTGACAATCGGCGCAACGATTGCACATGTGATGAGGAGCACGTGTGG
GAGGCC
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