mRNA_7921 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172531
Unique NamemRNA_7921
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: A0A836C7R2_9STRA (RPAP3_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R2_9STRA)

HSP 1 Score: 384 bits (985), Expect = 1.090e-134
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 1
Query:    1 MESLGHQQKGWRKTASKPPPKHKAGAAADKTASSKLVRKGPLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEMVDALMPLAEAQQAEELRELRKVYGVDK 585
            MESLGHQQKGWRKTASKPPPKHKAGAAADKTASSKLVRKGPLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEMVDALMPLAEAQQAEELRELRKVYGVDK
Sbjct:    1 MESLGHQQKGWRKTASKPPPKHKAGAAADKTASSKLVRKGPLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEMVDALMPLAEAQQAEELRELRKVYGVDK 195          
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: D7G465_ECTSI (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G465_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 7.050e-25
Identity = 63/178 (35.39%), Postives = 92/178 (51.69%), Query Frame = 1
Query:   91 TASSKLVRKGPLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVL--------SRCAAADSALPPCQPRNSSSDDGDA-------ANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEMVDALMPLAEAQQAEELRELRKVYGV 579
            TA S   + GPL+AP   ++F+RDWRRRC T+ +    L L+G   +  LF+VE++P +LGQ+L V+         R   A  A P  + R+ +   GDA       ANG  +        C+ WL  +  TGRFA+N+ FL+D+E   L    D +  +   +  EE+  LRK Y V
Sbjct:   43 TAISGGAKAGPLRAPKDHAQFQRDWRRRCCTNGERRDYLRLIGPKNVSALFRVEMEPDVLGQVLSVVCQEFPLHPQRLDTAMPATPENEERSGAPTRGDAGGSAAETANGSASADKAGARFCVEWLWALSRTGRFAVNILFLADKEKQELARAFDLISAVLGDEDDEEISSLRKAYAV 220          
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: A0A6H5JJ59_9PHAE (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ59_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.190e-23
Identity = 62/169 (36.69%), Postives = 88/169 (52.07%), Query Frame = 1
Query:  118 GPLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVL--------SRCAAADSALPPCQPRNSSSDDGDAA-------NGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEMVDALMPLAEAQQAEELRELRKVYGV 579
            GPL+AP   ++F+RDWRRRC+T+ +    L LVG      LF+VE++P +LGQ++ V+         R  AA  A    + R+ +   GDAA       NG+ +        C+ WLR +  TGRFA+N+ FL+D E  AL    D    +      EE+  LRK Y V
Sbjct:  122 GPLRAPKDHAQFQRDWRRRCRTNGERRDYLRLVGPKNASALFRVEMEPDVLGQVISVVCEEFPFQPQRIDAATPATQENEERSGAPTRGDAAGSTAITANGNASADEAGARLCLEWLRALSRTGRFAVNILFLADNEKQALARAFDLTTAVF---GDEEISSLRKAYAV 287          
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: A0A7S2REI2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REI2_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.840e-12
Identity = 54/164 (32.93%), Postives = 80/164 (48.78%), Query Frame = 1
Query:    1 MESLGHQQKGWRKTASKPPPKHKAGAAADKTASSKL------VRKGPLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLS 474
            +ESL  ++KGW    ++P P  +AGA   +   +K       + + P+Q P ++ EFERDW+R C++H D V  L L     +P LF  ++D  L+ +   V+S CA   SA        S +D  D + G            +A L  +  TGRF LN  FLS
Sbjct:  101 IESLSQKKKGW----ARPAPASQAGARPSRRRGNKARGAAVPISQFPVQPPPSRMEFERDWKRHCRSHDDRVRYLMLCTPDSLPGLFHADMDVTLMSE---VISACAHFASAA------GSEADPSDLSRGDFV---------LATLNALANTGRFTLNKSFLS 242          
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: A0A7S1X9I0_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X9I0_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 3.250e-8
Identity = 45/162 (27.78%), Postives = 73/162 (45.06%), Query Frame = 1
Query:  121 PLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEM---VDALMPLAEAQQ-------AEELRELRKVYG 576
            P  AP T  +F+R+WRR CKT  D    L L G + +  +FKVE+   LLG +L V+      D+A          + +G A            A  ++ L  +   GRFAL +  L  +   ++ ++   + + +  AEAQ        +E + +L+  YG
Sbjct:   97 PTAAPATSGDFQREWRRSCKTEEDKYKYLRLCGPATLRAIFKVEVGADLLGDMLQVI------DAAWLTFASFAEDTSEGSAL--------AEAAFVVSVLMALSDAGRFALTIRLLGAKAKESMRQLFHNISSAVAAAEAQDGSDALLSSENVEKLKGTYG 244          
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: UPI001865067B (coiled-coil domain-containing protein 103 n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001865067B)

HSP 1 Score: 61.2 bits (147), Expect = 6.710e-8
Identity = 51/148 (34.46%), Postives = 64/148 (43.24%), Query Frame = 1
Query:  133 PTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRE--------TAALGEMVDALMPLAEAQQAEEL 552
            P T +EF RDWRR   +  D   LL  +G  G+ ++F  E+   LLG+ L VLS C          QP       GD            V   +A L G+  TGRF LNV FLS  E           LG + D + PL   +Q  EL
Sbjct:   98 PRTAAEFSRDWRRFGGSAPDRYRLLISLGGEGLRRIFSAEIGFGLLGEFLSVLSECL---------QP-------GD------------VTAVVAVLEGMSQTGRFGLNVSFLSQEEWNRCLQLFRRLLGIVGDGI-PLTTDEQCTEL 216          
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: A0A061SGS5_9CHLO (Coiled-coil domain-containing protein 103 n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SGS5_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 1.570e-6
Identity = 55/189 (29.10%), Postives = 77/189 (40.74%), Query Frame = 1
Query:  100 SKLVRKGPLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGV-----LSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEMV---DALMPLAEAQQ---------------------AEELRELRKVYGV 579
            S L    P + P++  +FER+WRR CK+  +    L L G   +  LFKVE+   +L  IL       L+  AAAD                + A G      + VAR    L  I  +GRF+L V  +      A G ++   +A +  AEAQ+                     AE L  LRK+Y V
Sbjct:   24 SALCSSAPREKPSSAGDFEREWRRNCKSANEKYGYLRLCGPELLKALFKVEVSAGVLSGILQAVDEAWLTFAAAAD----------------EGAGGSALEEADFVARA---LESIAASGRFSLTVRLVGADGKRAAGRILGNLEAAVAAAEAQRGGGLEDEQGAAPPPRSGASLTAENLSSLRKLYNV 193          
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: A0A7S0N1U1_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N1U1_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 1.950e-6
Identity = 40/148 (27.03%), Postives = 59/148 (39.86%), Query Frame = 1
Query:   82 ADKTASSKLVRKGPLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRCA---AADSALPPCQPRNSSSDDGDAANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEMVDAL 516
            AD   ++ L    P Q P +  +FER+W+R C T  D       V     P++FKVE+ P +L  I+ V++  A     D A   C                     E +      L  + G GRF+L    L+ +   AL  + D L
Sbjct:   91 ADMVNAAALTTSAPQQLPKSSQDFEREWKRNCPTSVDKYKYFLFVPPDLFPQIFKVEITPTMLTDIIVVVNENALQKTGDDAQDCCTS-------------------EEMLHIARALSALTGVGRFSLTSRLLAPKAKQALSAIFDRL 219          
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: UPI0015AC62A1 (coiled-coil domain-containing protein 103 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015AC62A1)

HSP 1 Score: 55.5 bits (132), Expect = 7.160e-6
Identity = 43/131 (32.82%), Postives = 55/131 (41.98%), Query Frame = 1
Query:  133 PTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEMVDALMPL 525
            P T +EF RDWRR   +  D   LL  +G  G+ +LF  E+   LLG+ L VL  C      L P                            +A L G+  TGRF LNV FLS  E  A   ++  LM +
Sbjct:   98 PRTAAEFSRDWRRFEGSAEDRYQLLVSLGGEGVGRLFSAEVGCGLLGEFLLVLWGC------LRPAD----------------------AGAILAVLEGMSRTGRFGLNVSFLSRAERDACLRLMGKLMEI 200          
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: C1E2V3_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E2V3_MICCC)

HSP 1 Score: 53.5 bits (127), Expect = 3.370e-5
Identity = 46/155 (29.68%), Postives = 73/155 (47.10%), Query Frame = 1
Query:  124 LQAPTTQSEFERDWRRRCKTHADMVALLGLVGASG---MPKLFKVELDPQLLGQILGVLSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGGESVA-RCIAWLRGIQGTGRFALNVHFLSDRETAALGEMVDALMPLAEAQQAEELRELRKVYG 576
            ++AP++ +EFE+ WRR CK+       LGLV  +    + KLF+VE++  +L +++  L+   A D          S  DD + A    A G  ++  R  A+L  +   GRFAL    +      A+  + DAL+    A  A     L+  YG
Sbjct:  105 IRAPSSAAEFEKTWRRSCKSTDARWRYLGLVAGTREGRIAKLFRVEINGTVLSELVAALAAGYAGDG--------RSIRDDDEWAG---ARGARAIGERVRAFLAELATCGRFALAAKLMGSGAREAMRTLADALVANG-AVDAGAAEALKSAYG 247          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A836C7R2_9STRA1.090e-134100.00RPAP3_C domain-containing protein n=1 Tax=Tribonem... [more]
D7G465_ECTSI7.050e-2535.39RPAP3_C domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JJ59_9PHAE2.190e-2336.69RPAP3_C domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2REI2_9STRA3.840e-1232.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1X9I0_9CHLO3.250e-827.78Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
UPI001865067B6.710e-834.46coiled-coil domain-containing protein 103 n=1 Tax=... [more]
A0A061SGS5_9CHLO1.570e-629.10Coiled-coil domain-containing protein 103 n=2 Tax=... [more]
A0A7S0N1U1_9CHLO1.950e-627.03Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
UPI0015AC62A17.160e-632.82coiled-coil domain-containing protein 103 n=1 Tax=... [more]
C1E2V3_MICCC3.370e-529.68Uncharacterized protein n=1 Tax=Micromonas commoda... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_94contigContig_94:68420..69007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172531|e_gw1.94.50.1
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0015630,GO:0030286,GO:0032838,GO:0032991,GO:0036157,GO:0042802,GO:0042803,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0046983,GO:0097014,GO:0099568,GO:0120025,GO:0120038,GO:1902494
DescriptionDynein attachment factor N-terminus
COG categoryZ
Max annot lvl3041|Chlorophyta
EggNOG OGs2CFN8@1|root,2S3J2@2759|Eukaryota,3818M@33090|Viridiplantae,34MY8@3041|Chlorophyta
Evalue2.48e-09
Seed ortholog3055.EDP08368
Hectar predicted targeting categoryother localisation
TranscriptId172853
TrackFilteredModels1
ProteinId172531
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172531gene_7921Tribonema minus UTEX_B_3156 geneContig_94 68420..69007 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7921_1exon_7921_1Tribonema minus UTEX_B_3156 exonContig_94 68420..69007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7921CDS_7921Tribonema minus UTEX_B_3156 CDSContig_94 68420..69007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172531Trimin1|172531|e_gw1.94.50.1Tribonema minus UTEX_B_3156 polypeptideContig_94 68420..69007 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7921 ID=mRNA_7921|Name=jgi.p|Trimin1|172531|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=588bp|location=Sequence derived from alignment at Contig_94:68420..69007- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAGCCTGGGACATCAGCAGAAGGGCTGGCGAAAAACTGCCTCTAA
GCCCCCTCCCAAGCACAAAGCTGGCGCTGCCGCTGACAAGACTGCATCCT
CAAAACTAGTCAGGAAAGGGCCTCTTCAGGCGCCCACGACGCAGAGCGAA
TTTGAGCGCGACTGGCGGCGGCGCTGCAAGACCCATGCGGACATGGTCGC
CCTCCTCGGTCTGGTGGGTGCCAGTGGCATGCCCAAGCTGTTCAAGGTGG
AGCTGGACCCACAGCTACTGGGGCAGATACTGGGCGTGCTGTCGCGCTGC
GCCGCCGCCGACAGCGCGCTGCCGCCGTGCCAGCCTCGCAACAGCAGCAG
CGATGACGGAGATGCGGCGAATGGCCATCAGGCGGGGGGTGGGGAGAGTG
TGGCGCGCTGCATAGCGTGGCTCAGGGGGATACAGGGTACCGGCAGGTTC
GCGCTCAACGTGCACTTCCTGAGTGACAGGGAGACGGCCGCTCTCGGGGA
GATGGTGGATGCGCTGATGCCACTGGCGGAGGCGCAGCAGGCAGAGGAGC
TGCGCGAACTGCGCAAGGTGTACGGAGTGGATAAGTGA
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protein sequence of jgi.p|Trimin1|172531

>Trimin1|172531|e_gw1.94.50.1 ID=Trimin1|172531|e_gw1.94.50.1|Name=jgi.p|Trimin1|172531|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=196bp
MESLGHQQKGWRKTASKPPPKHKAGAAADKTASSKLVRKGPLQAPTTQSE
FERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRC
AAADSALPPCQPRNSSSDDGDAANGHQAGGGESVARCIAWLRGIQGTGRF
ALNVHFLSDRETAALGEMVDALMPLAEAQQAEELRELRKVYGVDK*
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mRNA from alignment at Contig_94:68420..69007-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7921 ID=mRNA_7921|Name=jgi.p|Trimin1|172531|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=588bp|location=Sequence derived from alignment at Contig_94:68420..69007- (Tribonema minus UTEX_B_3156 )
ATGGAGAGCCTGGGACATCAGCAGAAGGGCTGGCGAAAAACTGCCTCTAA GCCCCCTCCCAAGCACAAAGCTGGCGCTGCCGCTGACAAGACTGCATCCT CAAAACTAGTCAGGAAAGGGCCTCTTCAGGCGCCCACGACGCAGAGCGAA TTTGAGCGCGACTGGCGGCGGCGCTGCAAGACCCATGCGGACATGGTCGC CCTCCTCGGTCTGGTGGGTGCCAGTGGCATGCCCAAGCTGTTCAAGGTGG AGCTGGACCCACAGCTACTGGGGCAGATACTGGGCGTGCTGTCGCGCTGC GCCGCCGCCGACAGCGCGCTGCCGCCGTGCCAGCCTCGCAACAGCAGCAG CGATGACGGAGATGCGGCGAATGGCCATCAGGCGGGGGGTGGGGAGAGTG TGGCGCGCTGCATAGCGTGGCTCAGGGGGATACAGGGTACCGGCAGGTTC GCGCTCAACGTGCACTTCCTGAGTGACAGGGAGACGGCCGCTCTCGGGGA GATGGTGGATGCGCTGATGCCACTGGCGGAGGCGCAGCAGGCAGAGGAGC TGCGCGAACTGCGCAAGGTGTACGGAGTGGATAAGTGA
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Coding sequence (CDS) from alignment at Contig_94:68420..69007-

>mRNA_7921 ID=mRNA_7921|Name=jgi.p|Trimin1|172531|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=588bp|location=Sequence derived from alignment at Contig_94:68420..69007- (Tribonema minus UTEX_B_3156 )
ATGGAGAGCCTGGGACATCAGCAGAAGGGCTGGCGAAAAACTGCCTCTAA
GCCCCCTCCCAAGCACAAAGCTGGCGCTGCCGCTGACAAGACTGCATCCT
CAAAACTAGTCAGGAAAGGGCCTCTTCAGGCGCCCACGACGCAGAGCGAA
TTTGAGCGCGACTGGCGGCGGCGCTGCAAGACCCATGCGGACATGGTCGC
CCTCCTCGGTCTGGTGGGTGCCAGTGGCATGCCCAAGCTGTTCAAGGTGG
AGCTGGACCCACAGCTACTGGGGCAGATACTGGGCGTGCTGTCGCGCTGC
GCCGCCGCCGACAGCGCGCTGCCGCCGTGCCAGCCTCGCAACAGCAGCAG
CGATGACGGAGATGCGGCGAATGGCCATCAGGCGGGGGGTGGGGAGAGTG
TGGCGCGCTGCATAGCGTGGCTCAGGGGGATACAGGGTACCGGCAGGTTC
GCGCTCAACGTGCACTTCCTGAGTGACAGGGAGACGGCCGCTCTCGGGGA
GATGGTGGATGCGCTGATGCCACTGGCGGAGGCGCAGCAGGCAGAGGAGC
TGCGCGAACTGCGCAAGGTGTACGGAGTGGATAAGTGA
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