Trimin1|351304|estExt_Genemark1.C_Ctg_860056 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351304
Unique NameTrimin1|351304|estExt_Genemark1.C_Ctg_860056
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length297
Homology
BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: A0A835YIH0_9STRA (Ribosomal protein L25/Gln-tRNA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIH0_9STRA)

HSP 1 Score: 582 bits (1500), Expect = 7.980e-210
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0
Query:    1 MFVHRVCCGSLRRRTAALALQQNVPPSAGAAAQVRCMSSHFPDESRIGEHSRVLHAVTRDPLGGSKRSAELREATSHALESQRQNKLAASRVFPLGAATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGVQLFRPEQPFKIGWSMGTVRGKKLPKDAESDSDDEDAA 296
            MFVHRVCCGSLRRRTAALALQQNVPPSAGAAAQVRCMSSHFPDESRIGEHSRVLHAVTRDPLGGSKRSAELREATSHALESQRQNKLAASRVFPLGAATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGVQLFRPEQPFKIGWSMGTVRGKKLPKDAESDSDDEDAA
Sbjct:    1 MFVHRVCCGSLRRRTAALALQQNVPPSAGAAAQVRCMSSHFPDESRIGEHSRVLHAVTRDPLGGSKRSAELREATSHALESQRQNKLAASRVFPLGAATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGVQLFRPEQPFKIGWSMGTVRGKKLPKDAESDSDDEDAA 296          
BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: A0A1V9ZYZ7_9STRA (50S ribosomal protein L25 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYZ7_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 8.900e-21
Identity = 56/187 (29.95%), Postives = 103/187 (55.08%), Query Frame = 0
Query:  100 RPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGVQLFRPEQPFKIGWSMGTVRGKK--LPK 284
            R +R+GL+PG++YG+G DG +SK+++ + +   ++E R+++ S  N  Y V++  A P    L     + ++ + D   TVN+LR++ GR + +P+  +NEE S  ++RG ++  V   +   I   D  +IP  +DVD+ G+  G +I  + +  P  V     E+       + T+ GK+  +PK
Sbjct:   45 RLRRSGLLPGILYGEGSDGENSKVLVSMNQTDFEREYRKLRNSMGNQVYEVAIGDAKPTKVLL---RDITLHPVTDVPLTVNFLRFKPGRTVHIPLAFLNEETSPGLKRGGYINNVRHEIPCKI---DTETIPTTLDVDVNGMHVGQRIYLENITFPENVTPLVKERSV-----IATIAGKRGLIPK 220          
BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: M4C193_HYAAE (Ribosomal_TL5_C domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C193_HYAAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.480e-20
Identity = 51/169 (30.18%), Postives = 98/169 (57.99%), Query Frame = 0
Query:   97 AATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGVQLFRPE 265
            A+ R ++ G +PGV+YG+G DG D ++++  P R+ ++  R++  S +N  + V V+   P  A   +   V+++ + D    VN+LRY+ GR +S+P+  +NEE S  ++RG ++  +   ++  +S+    +IP  + +D+ G+  GDK+  + +  P GV+   PE
Sbjct:   47 ASRRLRKQGFLPGVLYGEGEDGKDERVLVSFPTRAFERMHRKLWTSIENQVFQVQVEEQSPVKA---YMRDVQLDPVTDVPLAVNFLRYKPGRVVSIPITYLNEEGSPGLKRGGFINHIYHALECTVST---DNIPTTLQIDVNGLHVGDKVFLEAITFPEGVEPNVPE 209          
BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: A0A329SV67_9STRA (Ribosomal_TL5_C domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A329SV67_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.980e-20
Identity = 51/163 (31.29%), Postives = 95/163 (58.28%), Query Frame = 0
Query:   97 AATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGV 259
            A+ R ++ GL+PGV+YG+G DG D ++++  P R+ ++E R++  S +N  + V V    P  A   +   V+++ + D    VN+LR++ GR +S+P+  +NEE S  ++RG ++  +   +D  I + +   IP  + +D+ G+  GDK+  + +  P GV
Sbjct:   45 ASRRLRKQGLLPGVLYGEGEDGKDERVLVSFPTRAFEREHRKLWTSIENQVFHVQVGDQPPVKA---YMRDVQLDPVTDVPLAVNFLRFKPGRAVSIPITYLNEEGSPGLKRGGFINHIHHSLDCTIFTDE---IPTTLQIDVNGLHVGDKVYLESIKFPEGV 201          
BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: A0A0P1ANU4_PLAHL (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ANU4_PLAHL)

HSP 1 Score: 100 bits (249), Expect = 6.140e-20
Identity = 52/163 (31.90%), Postives = 97/163 (59.51%), Query Frame = 0
Query:   97 AATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGV 259
            A+ R ++ GL+PGV+YG+G+DGT+ ++++ +P R+ +   R +  S +N  + + VD   P  A   +   V+++ + D    VN+LR++ GR +S+P++++NEE S  ++RG ++  +   +D  I + D   IP  + +D+ G+  GDKI    +  P GV
Sbjct:  782 ASRRLRKQGLLPGVLYGEGVDGTNERVLVSLPTRTFEILHRDLWTSIENQVFQIQVDNEPPVKA---YMRDVQLDPVTDVPLAVNFLRFKPGRTVSIPIKVMNEEGSPGLKRGGFINHIYHSLDCTIFTED---IPATLKIDVNGLHVGDKIFLDSISFPDGV 938          
BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: A0A3M6VAT3_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VAT3_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.510e-19
Identity = 54/169 (31.95%), Postives = 96/169 (56.80%), Query Frame = 0
Query:   97 AATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGVQLFRPE 265
            A+ R ++ G +PGV+YG+G DG D ++++  P R+ ++  R++  S +N  + V VD   P  A   +   V+++ + D    VN+LRY+ GR +S+P+  +NEE S  ++RG ++  +   +D  I + D   IP  + +D+ G+  GDK+  + +  P GV    PE
Sbjct:  779 ASRRLRKQGFLPGVLYGEGEDGKDERVLVSFPTRTFERMHRKIWTSIENQVFQVQVDDQLPVKA---YMRDVQLDPVTDVPIAVNFLRYKPGRTVSIPITYLNEEGSPGLKRGGYINHIHHALDCTIFTDD---IPATLQIDVNGLHVGDKVYLESIKFPEGVTANIPE 941          
BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: G4YKY4_PHYSP (Ribosomal_TL5_C domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YKY4_PHYSP)

HSP 1 Score: 95.5 bits (236), Expect = 1.510e-19
Identity = 50/163 (30.67%), Postives = 93/163 (57.06%), Query Frame = 0
Query:   97 AATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGV 259
            A+ R ++ G +PGV+YG+G DG D ++++  P R+ ++  R++  S +N  + V VD   P  A   +   V+++ + D    VN+LR++ GR +S+P+  +NEE S  ++RG ++  +   ++  I + D   IP  + +D+ G+  GDK+    +  P GV
Sbjct:   48 ASRRLRKQGFLPGVLYGEGEDGKDERVLVSFPTRTFERMHRKLWTSIENQVFQVQVDDQPPVKA---YMRDVQLDPVTDVPVAVNFLRFKPGRKVSIPITYLNEEGSPGLKRGGFINHIHHSLECSIFTDD---IPTTLQIDVNGLHVGDKVYLDAIKFPEGV 204          
BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: A0A484E526_BRELC (Ribosomal_TL5_C domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E526_BRELC)

HSP 1 Score: 92.8 bits (229), Expect = 1.410e-18
Identity = 51/163 (31.29%), Postives = 94/163 (57.67%), Query Frame = 0
Query:   97 AATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGV 259
            A+ R ++ GL+PGV+YG+G DG D ++++ +P RS ++  R++  S +N  + V VD   P  A   +   V+++ + D    VN+LR++ G  +S+P+  +NEE S  ++RG ++  +   +D  I + D   IP  + VD+ G+  GD++  + +    GV
Sbjct:   46 ASRRLRKHGLLPGVLYGEGEDGNDERVLVSLPTRSFERMHRKLWTSIENQVFQVQVDDKPPVKA---YMRDVQLDPVTDVPVAVNFLRFKPGCRVSIPITYLNEEGSPGLKRGGFINHIYHSLDCTIFTDD---IPTTLQVDVNGLHVGDRLCLEAINFSDGV 202          
BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: A0A3F2RN58_9STRA (Ribosomal_TL5_C domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RN58_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.660e-18
Identity = 52/169 (30.77%), Postives = 94/169 (55.62%), Query Frame = 0
Query:   97 AATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGVQLFRPE 265
            A+ R ++ G +PGV+YG+G DG D ++++    R+ +   R++  S +N  + V V    P  A   +   V+++ + D    VN+LR++ GR +S+P+  +NEE S  ++RG ++  +   ++  I + D   IPK + VD+ G+  GDK+  + +  P GV    PE
Sbjct:   44 ASRRLRKQGFLPGVLYGEGEDGGDERVLISFRTRTFEGLHRKLWTSIENQVFQVQVGDQKPVKA---YMRDVQLDPVTDIPVAVNFLRFKPGRTVSIPITYLNEEGSPGLKRGGYINHIHHALECTIFTDD---IPKTLQVDVNGLHVGDKVHLEAINFPEGVVPSIPE 206          
BLAST of jgi.p|Trimin1|351304 vs. uniprot
Match: A0A225WBQ2_9STRA (Ribosomal protein L25, Ctc-form n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WBQ2_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.690e-18
Identity = 48/163 (29.45%), Postives = 92/163 (56.44%), Query Frame = 0
Query:   97 AATRPQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLVSVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNEELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDAKYLVLPPGV 259
            A+ R ++ G +PGV+YG+G +G D ++++  P R+ +   R++  S +N  + V V    P     V+   V+++ + D    VN+LR++ GR +S+P+  +NEE S  ++RG ++  +   +D    + +   IPK + +D+ G+  GDK+  + +  P GV
Sbjct:   44 ASRRLRKQGFLPGVLYGEGENGKDERVLVSFPTRTFEHVHRKLWTSIENQVFQVQVGEQAPVK---VYMRDVQLDPVTDAPMAVNFLRFKPGRAVSIPITYLNEESSPGLKRGGFINHIYHSLDCTSFTDE---IPKTLQIDVNGLHVGDKVYLEAIKFPEGV 200          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351304 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YIH0_9STRA7.980e-210100.00Ribosomal protein L25/Gln-tRNA synthetase n=1 Tax=... [more]
A0A1V9ZYZ7_9STRA8.900e-2129.9550S ribosomal protein L25 n=1 Tax=Thraustotheca cl... [more]
M4C193_HYAAE1.480e-2030.18Ribosomal_TL5_C domain-containing protein n=1 Tax=... [more]
A0A329SV67_9STRA1.980e-2031.29Ribosomal_TL5_C domain-containing protein n=11 Tax... [more]
A0A0P1ANU4_PLAHL6.140e-2031.90Cleavage and polyadenylation specificity factor su... [more]
A0A3M6VAT3_9STRA1.510e-1931.95Cleavage and polyadenylation specificity factor su... [more]
G4YKY4_PHYSP1.510e-1930.67Ribosomal_TL5_C domain-containing protein n=3 Tax=... [more]
A0A484E526_BRELC1.410e-1831.29Ribosomal_TL5_C domain-containing protein n=1 Tax=... [more]
A0A3F2RN58_9STRA2.660e-1830.77Ribosomal_TL5_C domain-containing protein n=4 Tax=... [more]
A0A225WBQ2_9STRA3.690e-1829.45Ribosomal protein L25, Ctc-form n=1 Tax=Phytophtho... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020057Ribosomal protein L25, beta domainPFAMPF14693Ribosomal_TL5_Ccoord: 192..263
e-value: 9.6E-10
score: 38.7
IPR037121Ribosomal protein L25, C-terminalGENE3D2.170.120.20Ribosomal protein L25, beta domaincoord: 190..270
e-value: 1.3E-9
score: 40.2
NoneNo IPR availablePANTHERPTHR33284:SF1RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEINcoord: 97..266
NoneNo IPR availablePANTHERPTHR33284RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEINcoord: 97..266
IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamilySUPERFAMILY50715Ribosomal protein L25-likecoord: 96..264

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_86contigContig_86:539971..548459 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351304mRNA_13710Tribonema minus UTEX_B_3156 mRNAContig_86 539893..548578 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351304|estExt_Genemark1.C_Ctg_860056 ID=Trimin1|351304|estExt_Genemark1.C_Ctg_860056|Name=jgi.p|Trimin1|351304|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=297bp
MFVHRVCCGSLRRRTAALALQQNVPPSAGAAAQVRCMSSHFPDESRIGEH
SRVLHAVTRDPLGGSKRSAELREATSHALESQRQNKLAASRVFPLGAATR
PQRAGLIPGVIYGKGLDGTDSKIMMCVPERSLQKEMRQMQESFQNVPYLV
SVDGADPADAELVFPAYVEINKLNDRFQTVNWLRYRVGRPLSVPMRLVNE
ELSLSMRRGAWVQKVERRVDILISSMDPASIPKYIDVDLTGVKAGDKIDA
KYLVLPPGVQLFRPEQPFKIGWSMGTVRGKKLPKDAESDSDDEDAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020057Ribosomal_L25_b-dom
IPR037121Ribosomal_L25_C
IPR011035Ribosomal_L25/Gln-tRNA_synth