Trimin1|95175|CE95174_271 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|95175
Unique NameTrimin1|95175|CE95174_271
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length121
Homology
BLAST of jgi.p|Trimin1|95175 vs. uniprot
Match: A0A835YLI1_9STRA (ER membrane protein complex subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLI1_9STRA)

HSP 1 Score: 226 bits (577), Expect = 6.400e-75
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query:    1 MAQAGMSSAAGEGDDKGFLNAQNLMHNMKIITACRTSLCAVAGIATGILGCTGSMGLILYLITYATVSLALLAKMGFDRSDYTAAKKDSGIAGFLLEGLFGLSITFILFWTLAYALVYVY 120
            MAQAGMSSAAGEGDDKGFLNAQNLMHNMKIITACRTSLCAVAGIATGILGCTGSMGLILYLITYATVSLALLAKMGFDRSDYTAAKKDSGIAGFLLEGLFGLSITFILFWTLAYALVYVY
Sbjct:    1 MAQAGMSSAAGEGDDKGFLNAQNLMHNMKIITACRTSLCAVAGIATGILGCTGSMGLILYLITYATVSLALLAKMGFDRSDYTAAKKDSGIAGFLLEGLFGLSITFILFWTLAYALVYVY 120          
BLAST of jgi.p|Trimin1|95175 vs. uniprot
Match: A0A6H5KZV5_9PHAE (ER membrane protein complex subunit 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZV5_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 3.790e-24
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 0
Query:   18 FLNAQNLMHNMKIITACRTSLCAVAGIATGILGCTGSMGLILYLITYATVSLALLAKMGF-DRSDYTAAKKDSGIAGFLLEGLFGLSITFILFWTLAYALVYVY 120
            F +++N+ HN K++  CRTSLCAV GI +GILG TG +GL  YLI Y  VSL+L+ KMG  D S YTA K    +A F   G+   ++T+ILFWTLAY LVY+Y
Sbjct:   26 FYSSENIAHNKKVLEYCRTSLCAVGGIVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGK--GKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 127          
BLAST of jgi.p|Trimin1|95175 vs. uniprot
Match: F0YEP0_AURAN (ER membrane protein complex subunit 6 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEP0_AURAN)

HSP 1 Score: 72.8 bits (177), Expect = 2.380e-14
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 0
Query:   18 FLNAQNLMHNMKIITACRTSLCAVAGIATGILGCTGSMGLILYLITYATVSLALLAKMGFDRSDYTAAKKDSGIAGFLLEGLFGLSITFILFWTLAYALVYVY 120
             LN + +MHNM  I  CR+ L   AG+  GILG T   G + ++ +Y  +SLALL  M  D   YT    +  I   ++ G+    ++F+LFWTL+YALV++Y
Sbjct:    1 MLNREAMMHNMSAIDGCRSYLTIFAGVGAGILGLTSVRGALGFMASYVAISLALLVAMKGDSMAYT----NEAIPNHVIGGVGKYGLSFVLFWTLSYALVHIY 99          
BLAST of jgi.p|Trimin1|95175 vs. uniprot
Match: A0A7S3ZWF8_9STRA (ER membrane protein complex subunit 6 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWF8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.690e-14
Identity = 39/109 (35.78%), Postives = 63/109 (57.80%), Query Frame = 0
Query:   12 EGDDKGFLNAQNLMHNMKIITACRTSLCAVAGIATGILGCTGSMGLILYLITYATVSLALLAKMGFDRSDYTAAKKDSGIAGFLLEGLFGLSITFILFWTLAYALVYVY 120
            E D K   +   + HN+  +  CR+ L     +  G++G TG  GL+ ++ TY   S+ALL +M  +  DYT+      +  F++ G  G +++F+LFWTLAYALV++Y
Sbjct:    8 EEDAKNLFDRDAMAHNLNAVDGCRSYLTLFGAVGAGVVGATGLRGLLFFVGTYVLGSVALLTRMRCNPVDYTS----ESLTKFVIMGAPGYALSFVLFWTLAYALVHIY 112          
BLAST of jgi.p|Trimin1|95175 vs. uniprot
Match: A0A7S3ZWK7_9STRA (ER membrane protein complex subunit 6 n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWK7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 9.110e-13
Identity = 37/105 (35.24%), Postives = 61/105 (58.10%), Query Frame = 0
Query:   16 KGFLNAQNLMHNMKIITACRTSLCAVAGIATGILGCTGSMGLILYLITYATVSLALLAKMGFDRSDYTAAKKDSGIAGFLLEGLFGLSITFILFWTLAYALVYVY 120
            K   +   + HN+  +  CR+ L     +  G++G TG  GL+ ++ TY   S+ALL +M  +  DYT+      +  F++ G  G +++F+LFWTLAYALV++Y
Sbjct:   50 KNLFDRDAMAHNLNAVDGCRSYLTLFGAVGAGVVGATGLRGLLFFVGTYVLGSVALLTRMRCNPVDYTS----ESLTKFVIMGAPGYALSFVLFWTLAYALVHIY 150          
BLAST of jgi.p|Trimin1|95175 vs. uniprot
Match: A0A7S2WKV8_9STRA (ER membrane protein complex subunit 6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKV8_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.080e-12
Identity = 40/103 (38.83%), Postives = 54/103 (52.43%), Query Frame = 0
Query:   18 FLNAQNLMHNMKIITACRTSLCAVAGIATGILGCTGSMGLILYLITYATVSLALLAKMGFDRSDYTAAKKDSGIAGFLLEGLFGLSITFILFWTLAYALVYVY 120
            F + +  MHN   I   RT L  VAG+  G+LG  G  G +LY+  Y  +S  LL  MGFD + +T          F L  +    +++IL WTL YALVY+Y
Sbjct:   15 FFSMEAKMHNDNAIDNIRTYLMMVAGVCAGVLGMNGPQGAVLYIAVYLAISTCLLCAMGFDSTRFTNLSP----LHFTLSAIEKYGLSYILLWTLCYALVYIY 113          
BLAST of jgi.p|Trimin1|95175 vs. uniprot
Match: A0A3S5FCH8_9PLAT (ER membrane protein complex subunit 6 n=2 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A3S5FCH8_9PLAT)

HSP 1 Score: 68.2 bits (165), Expect = 2.950e-12
Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 0
Query:   26 HNMKIITACRTSLCAVAGIATGILGCTGSMGLILYLITYATVSLALLAKMGFDRSDYTAAKKDSGIAGFLLEGLFGLSITFILFWTLAYAL 116
            HN+ ++  CRTS+ A++G   GILG TG MG + YL+T   +SL ++ K G +   Y   K     +  L+ G+FG   T+ILFWT  Y +
Sbjct:   35 HNLTVVGYCRTSIAAISGCTAGILGLTGLMGFLFYLLTSCILSLLMMQKAGSNWRKYFLQK-----SSLLIHGIFGEMTTYILFWTFIYGM 120          
BLAST of jgi.p|Trimin1|95175 vs. uniprot
Match: A0A0G4ERR0_VITBC (ER membrane protein complex subunit 6 n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ERR0_VITBC)

HSP 1 Score: 67.0 bits (162), Expect = 5.800e-12
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 0
Query:   15 DKGFLNAQNLMHNMKIITACRTSLCAVAGIATGILGCTGSMGLILYLITYATVSLALLAKMGFDRSDYTAAKKDSGIAGFLLEGLFGLSITFILFWTLAYALVYVY 120
            D+  +    L HN +++  CR     V+G+A GILG TG  GL+++++    +SL LLA++ FD S Y    K+  I  F   G+    ++FILFWTLAY +VY++
Sbjct:   11 DEQLIIESMLGHNRRVVAHCRNFAAIVSGLAAGILGLTGLWGLLVFVMATLGISLILLARVNFDTSLYFPTVKEVLIGQFW-HGM----MSFILFWTLAYDMVYIF 111          
BLAST of jgi.p|Trimin1|95175 vs. uniprot
Match: A0A6S7NQS7_LACSI (Uncharacterized protein n=1 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7NQS7_LACSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.980e-9
Identity = 39/101 (38.61%), Postives = 54/101 (53.47%), Query Frame = 0
Query:   20 NAQNLMHNMKIITACRTSLCAVAGIATGILGCTGSMGLILYLITYATVSLALLAKMGFDRSDYTAAKKDSGIAGFLLEGLFGLSITFILFWTLAYALVYVY 120
            N +N+  NMK+I   RT +  + G+  GILG TG MG ++YL+  A  SL L AK GF    Y            LL+G  G  ++F+LFWT  Y  +Y +
Sbjct:  429 NVENMQSNMKVIYYSRTFMSIIGGVIAGILGFTGLMGFVIYLLVMALTSLCLTAKAGFSIHTYFDTWNRV-----LLDGFLGGLLSFVLFWT--YPFIYAF 522          
BLAST of jgi.p|Trimin1|95175 vs. uniprot
Match: A0A0G4FW70_9ALVE (ER membrane protein complex subunit 6 n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FW70_9ALVE)

HSP 1 Score: 60.5 bits (145), Expect = 2.280e-9
Identity = 38/115 (33.04%), Postives = 63/115 (54.78%), Query Frame = 0
Query:    6 MSSAAGEGDDKGFLNAQNLMHNMKIITACRTSLCAVAGIATGILGCTGSMGLILYLITYATVSLALLAKMGFDRSDYTAAKKDSGIAGFLLEGLFGLSITFILFWTLAYALVYVY 120
            +S   GE    G + + +L +N +I++ CR     V G+A G+ G T   G++ +L++   +S  LL +MGF+   Y     +  + G L  GL    ++FILFWTL Y +VY++
Sbjct:    8 VSEEPGENPSAGVVGS-SLAYNRRILSYCRNYAAIVGGVAAGLCGATSLQGVLFFLVSALLMSGVLLVRMGFNFKPYFLTMHEV-VGGQLFAGL----LSFILFWTLVYDIVYIF 116          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|95175 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YLI1_9STRA6.400e-75100.00ER membrane protein complex subunit 6 n=1 Tax=Trib... [more]
A0A6H5KZV5_9PHAE3.790e-2453.85ER membrane protein complex subunit 6 n=2 Tax=Ecto... [more]
F0YEP0_AURAN2.380e-1439.81ER membrane protein complex subunit 6 n=1 Tax=Aure... [more]
A0A7S3ZWF8_9STRA4.690e-1435.78ER membrane protein complex subunit 6 n=1 Tax=Pela... [more]
A0A7S3ZWK7_9STRA9.110e-1335.24ER membrane protein complex subunit 6 n=2 Tax=Pela... [more]
A0A7S2WKV8_9STRA1.080e-1238.83ER membrane protein complex subunit 6 n=1 Tax=Rhiz... [more]
A0A3S5FCH8_9PLAT2.950e-1239.56ER membrane protein complex subunit 6 n=2 Tax=Prot... [more]
A0A0G4ERR0_VITBC5.800e-1238.68ER membrane protein complex subunit 6 n=2 Tax=Vitr... [more]
A0A6S7NQS7_LACSI1.980e-938.61Uncharacterized protein n=1 Tax=Lactuca saligna Ta... [more]
A0A0G4FW70_9ALVE2.280e-933.04ER membrane protein complex subunit 6 n=1 Tax=Chro... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029008ER membrane protein complex subunit 6-likePFAMPF07019EMC6coord: 31..114
e-value: 2.7E-13
score: 50.3
IPR008504ER membrane protein complex subunit 6PANTHERPTHR20994UNCHARACTERIZEDcoord: 7..119
NoneNo IPR availablePANTHERPTHR20994:SF0ER MEMBRANE PROTEIN COMPLEX SUBUNIT 6coord: 7..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_85contigContig_85:603826..607636 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|95175mRNA_12219Tribonema minus UTEX_B_3156 mRNAContig_85 603621..607675 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|95175|CE95174_271 ID=Trimin1|95175|CE95174_271|Name=jgi.p|Trimin1|95175|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp
MAQAGMSSAAGEGDDKGFLNAQNLMHNMKIITACRTSLCAVAGIATGILG
CTGSMGLILYLITYATVSLALLAKMGFDRSDYTAAKKDSGIAGFLLEGLF
GLSITFILFWTLAYALVYVY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029008EMC6-like
IPR008504Emc6