mRNA_12146 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|171726
Unique NamemRNA_12146
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|171726 vs. uniprot
Match: A0A835YIR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIR8_9STRA)

HSP 1 Score: 240 bits (612), Expect = 2.350e-80
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 
Query:    1 LHSQDPIHNGEELMNPLDSATRVLALGDYMAHMSDVRAVIEALPFAEHGLRANDIDRTDRQNWAACQRLAFRKVRACLAALASGGGTPKHGTSAYLEVSSTCCPPASNGSVIVLPYT 351
            LHSQDPIHNGEELMNPLDSATRVLALGDYMAHMSDVRAVIEALPFAEHGLRANDIDRTDRQNWAACQRLAFRKVRACLAALASGGGTPKHGTSAYLEVSSTCCPPASNGSVIVLPYT
Sbjct:    1 LHSQDPIHNGEELMNPLDSATRVLALGDYMAHMSDVRAVIEALPFAEHGLRANDIDRTDRQNWAACQRLAFRKVRACLAALASGGGTPKHGTSAYLEVSSTCCPPASNGSVIVLPYT 117
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BLAST of jgi.p|Trimin1|171726 vs. uniprot
Match: A0A836CG46_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG46_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.190e-19
Identity = 41/52 (78.85%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:   10 QDPIHNGEELMNPLDSATRVLALGDYMAHMSDVRAVIEALPFAEHGLRANDI 165
            +DPIHNG++LMNPLDSATRVLA+GDYMAHMS V+AV + LPFA+HGLRAND+
Sbjct:  176 RDPIHNGKKLMNPLDSATRVLAMGDYMAHMSHVKAVFDQLPFAQHGLRANDV 227
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BLAST of jgi.p|Trimin1|171726 vs. uniprot
Match: A0A7S3SL85_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SL85_EMIHU)

HSP 1 Score: 52.0 bits (123), Expect = 2.800e-5
Identity = 36/107 (33.64%), Postives = 55/107 (51.40%), Query Frame = 1 
Query:    1 LHSQDPIHNGEELMNPLDSATRVLALGDYMAHMSDVRAVIEALPFAEHGLRANDIDRTDRQNWAACQRLAFRKVRACLAALASGG--GTPKH----GTSAYLEVSST 303
            +HSQD  HN  +LM+ +  A RV+  G Y+A  S +  V   +P+++HGL A+ +DRTD  +          +V+ CL  +  G   G P       T AYL + S+
Sbjct:  276 IHSQDWRHNLAKLMSHI--AKRVITFGRYVATHSHLLQVRNVMPYSDHGLSADAVDRTDSMDKGGPADCCAPRVQDCLEKMQKGQVEGKPAEPTMLATRAYLRMVSS 380
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|171726 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YIR8_9STRA2.350e-80100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CG46_9STRA1.190e-1978.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3SL85_EMIHU2.800e-533.64Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_84contigContig_84:596772..597125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|171726|e_gw1.84.14.1
Hectar predicted targeting categoryother localisation
TranscriptId172048
TrackFilteredModels1
ProteinId171726
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171726gene_12146Tribonema minus UTEX_B_3156 geneContig_84 596772..597125 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12146_1exon_12146_1Tribonema minus UTEX_B_3156 exonContig_84 596772..597125 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12146CDS_12146Tribonema minus UTEX_B_3156 CDSContig_84 596772..597125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171726Trimin1|171726|e_gw1.84.14.1Tribonema minus UTEX_B_3156 polypeptideContig_84 596772..597125 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12146 ID=mRNA_12146|Name=jgi.p|Trimin1|171726|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=354bp|location=Sequence derived from alignment at Contig_84:596772..597125+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTTCACTCGCAGGACCCCATACACAATGGGGAAGAGCTCATGAACCCTCT
GGACTCTGCGACAAGAGTGCTGGCGTTGGGGGATTACATGGCACACATGA
GTGATGTCAGGGCTGTCATCGAGGCGCTGCCATTTGCAGAGCATGGGCTT
CGTGCAAATGACATTGACCGCACTGACCGACAAAACTGGGCAGCTTGCCA
ACGCCTTGCTTTTAGAAAAGTAAGGGCATGCCTCGCTGCACTCGCTAGTG
GTGGGGGCACGCCCAAGCATGGAACCAGCGCCTATCTCGAGGTGAGTAGT
ACGTGCTGTCCACCTGCGAGCAATGGTTCAGTTATCGTCTTACCATATAC
ATAG
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protein sequence of jgi.p|Trimin1|171726

>Trimin1|171726|e_gw1.84.14.1 ID=Trimin1|171726|e_gw1.84.14.1|Name=jgi.p|Trimin1|171726|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=118bp
LHSQDPIHNGEELMNPLDSATRVLALGDYMAHMSDVRAVIEALPFAEHGL
RANDIDRTDRQNWAACQRLAFRKVRACLAALASGGGTPKHGTSAYLEVSS
TCCPPASNGSVIVLPYT*
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mRNA from alignment at Contig_84:596772..597125+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12146 ID=mRNA_12146|Name=jgi.p|Trimin1|171726|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=354bp|location=Sequence derived from alignment at Contig_84:596772..597125+ (Tribonema minus UTEX_B_3156 )
CTTCACTCGCAGGACCCCATACACAATGGGGAAGAGCTCATGAACCCTCT
GGACTCTGCGACAAGAGTGCTGGCGTTGGGGGATTACATGGCACACATGA
GTGATGTCAGGGCTGTCATCGAGGCGCTGCCATTTGCAGAGCATGGGCTT
CGTGCAAATGACATTGACCGCACTGACCGACAAAACTGGGCAGCTTGCCA
ACGCCTTGCTTTTAGAAAAGTAAGGGCATGCCTCGCTGCACTCGCTAGTG
GTGGGGGCACGCCCAAGCATGGAACCAGCGCCTATCTCGAGGTGAGTAGT
ACGTGCTGTCCACCTGCGAGCAATGGTTCAGTTATCGTCTTACCATATAC
ATAG
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Coding sequence (CDS) from alignment at Contig_84:596772..597125+

>mRNA_12146 ID=mRNA_12146|Name=jgi.p|Trimin1|171726|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=354bp|location=Sequence derived from alignment at Contig_84:596772..597125+ (Tribonema minus UTEX_B_3156 )
CTTCACTCGCAGGACCCCATACACAATGGGGAAGAGCTCATGAACCCTCT
GGACTCTGCGACAAGAGTGCTGGCGTTGGGGGATTACATGGCACACATGA
GTGATGTCAGGGCTGTCATCGAGGCGCTGCCATTTGCAGAGCATGGGCTT
CGTGCAAATGACATTGACCGCACTGACCGACAAAACTGGGCAGCTTGCCA
ACGCCTTGCTTTTAGAAAAGTAAGGGCATGCCTCGCTGCACTCGCTAGTG
GTGGGGGCACGCCCAAGCATGGAACCAGCGCCTATCTCGAGGTGAGTAGT
ACGTGCTGTCCACCTGCGAGCAATGGTTCAGTTATCGTCTTACCATATAC
ATAG
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