mRNA_12092 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|171685
Unique NamemRNA_12092
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: A0A836C8S5_9STRA (DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S5_9STRA)

HSP 1 Score: 108 bits (269), Expect = 7.540e-30
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 MDEDGXXXXXXXGGVSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 174
            MDEDGXXXXXXXGGVSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR
Sbjct:    1 MDEDGXXXXXXXGGVSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 58
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BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: D8LHK5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHK5_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 8.450e-22
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:   37 GGVSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 174
            GGV+Y+CGDCG+ N IKAKDPIQCR CGYRIMYK RTKRLIQFEAR
Sbjct:   23 GGVTYLCGDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRLIQFEAR 68
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BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: A0A0M0JEK0_9EUKA (Poly-histidine-tagged ubiquitin n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JEK0_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 2.050e-20
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   37 GGVSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 174
            GG +Y+CGDCG TNEIK KDPI+CR CGYRI+YKMRTK LIQFEAR
Sbjct:   76 GGTAYLCGDCGQTNEIKPKDPIRCRFCGYRILYKMRTKNLIQFEAR 121
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BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: A0A7S3VVB3_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3VVB3_9SPIT)

HSP 1 Score: 82.4 bits (202), Expect = 8.290e-19
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:   37 GGVSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 174
            GG  Y+CGDCGT N+IKA+DPI+CR CGYRIMYK+RT  LIQFEAR
Sbjct:   84 GGTDYMCGDCGTMNDIKARDPIRCRVCGYRIMYKVRTTNLIQFEAR 129
[Close]
BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: A0A1Y1WTM2_9FUNG (Uncharacterized protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1WTM2_9FUNG)

HSP 1 Score: 80.1 bits (196), Expect = 1.100e-18
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:   43 VSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 174
            ++YICGDCG  NEI+AK+PI+CR CG+RIMYK RTKR++QFEAR
Sbjct:   17 ITYICGDCGVENEIRAKEPIRCRDCGHRIMYKKRTKRMVQFEAR 60
[Close]
BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: M4B5E7_HYAAE (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4B5E7_HYAAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.750e-18
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   43 VSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 174
            + YICGDCG  N + A+DPI+CR+CGYRIMYK RTKRLIQFEAR
Sbjct:    7 IKYICGDCGIVNYLSARDPIRCRACGYRIMYKARTKRLIQFEAR 50
[Close]
BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: K3X9M6_GLOUD (Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3X9M6_GLOUD)

HSP 1 Score: 79.3 bits (194), Expect = 2.720e-18
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   43 VSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 174
            + YICGDCG  N + A+DPI+CR+CGYRIMYK RTKRLIQFEAR
Sbjct:   25 IKYICGDCGIVNYLSARDPIRCRACGYRIMYKARTKRLIQFEAR 68
[Close]
BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: A0A3R7GTT7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GTT7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.790e-18
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   43 VSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 174
            + YICGDCG  N + A+DPI+CR+CGYRIMYK RTKRLIQFEAR
Sbjct:   24 IKYICGDCGIVNYLSARDPIRCRACGYRIMYKARTKRLIQFEAR 67
[Close]
BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: A0A1Y1VGP6_9FUNG (Uncharacterized protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VGP6_9FUNG)

HSP 1 Score: 79.0 bits (193), Expect = 2.930e-18
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:   43 VSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 174
            +SYICGDCG  N+I+ K+PI+C+ CGYRIMYK RTKR++QFEAR
Sbjct:   14 ISYICGDCGVENDIRPKEPIRCKECGYRIMYKKRTKRMVQFEAR 57
[Close]
BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: A0A7S3TCH8_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TCH8_EMIHU)

HSP 1 Score: 81.3 bits (199), Expect = 3.040e-18
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   37 GGVSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 174
            GG  Y+CGDCG  N+IK KDPI+CR CGYRIMYK+RTK LIQFEAR
Sbjct:   94 GGTDYMCGDCGHLNDIKPKDPIRCRVCGYRIMYKVRTKNLIQFEAR 139
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|171685 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8S5_9STRA7.540e-30100.00DNA-directed RNA polymerases I, II, and III 7.0 kD... [more]
D8LHK5_ECTSI8.450e-2284.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0M0JEK0_9EUKA2.050e-2080.43Poly-histidine-tagged ubiquitin n=1 Tax=Chrysochro... [more]
A0A7S3VVB3_9SPIT8.290e-1976.09Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A1Y1WTM2_9FUNG1.100e-1872.73Uncharacterized protein n=1 Tax=Anaeromyces robust... [more]
M4B5E7_HYAAE1.750e-1875.00Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]
K3X9M6_GLOUD2.720e-1875.00Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4... [more]
A0A3R7GTT7_9STRA2.790e-1875.00Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A1Y1VGP6_9FUNG2.930e-1870.45Uncharacterized protein n=1 Tax=Piromyces finnis T... [more]
A0A7S3TCH8_EMIHU3.040e-1876.09Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_84contigContig_84:64604..65347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|171685|e_gw1.84.75.1
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
KEGG rclassRC02795
KEGG ReactionR00435,R00441,R00442,R00443
KEGG ModuleM00180,M00181,M00182
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG koko:K03009,ko:K09122
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0000418,GO:0000419,GO:0000428,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006356,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006383,GO:0006396,GO:0006397,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009304,GO:0009452,GO:0009653,GO:0009719,GO:0009826,GO:0009856,GO:0009860,GO:0009889,GO:0009893,GO:0009932,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010628,GO:0016043,GO:0016049,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022414,GO:0023052,GO:0030154,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032989,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0040007,GO:0040029,GO:0042221,GO:0042795,GO:0042797,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044706,GO:0045815,GO:0046483,GO:0046872,GO:0046914,GO:0048468,GO:0048518,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051704,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060560,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Preferred namePOLR2K
DescriptionDNA-directed 5'-3' RNA polymerase activity
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1996@1|root,KOG3507@2759|Eukaryota
Evalue1.38e-22
Seed ortholog2880.D8LHK5
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId172007
TrackFilteredModels1
ProteinId171685
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171685gene_12092Tribonema minus UTEX_B_3156 geneContig_84 64604..65347 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12092_1exon_12092_1Tribonema minus UTEX_B_3156 exonContig_84 64604..64664 +
exon_12092_2exon_12092_2Tribonema minus UTEX_B_3156 exonContig_84 65232..65347 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12092CDS_12092Tribonema minus UTEX_B_3156 CDSContig_84 64604..64664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171685Trimin1|171685|e_gw1.84.75.1Tribonema minus UTEX_B_3156 polypeptideContig_84 64604..65347 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12092 ID=mRNA_12092|Name=jgi.p|Trimin1|171685|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=177bp|location=Sequence derived from alignment at Contig_84:64604..65347+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGAGGACGGCGGGGGCGGGGGTGGAAGCAGCGGTGGCGTGTCCTA
TATATGCGGAGACTGTGGGACGACCAATGAGATCAAGGCCAAGGACCCCA
TTCAGTGCCGCTCCTGCGGCTACAGAATCATGTATAAGATGCGGACCAAG
CGTCTGATACAGTTTGAGGCAAGATGA
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protein sequence of jgi.p|Trimin1|171685

>Trimin1|171685|e_gw1.84.75.1 ID=Trimin1|171685|e_gw1.84.75.1|Name=jgi.p|Trimin1|171685|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=59bp
MDEDGGGGGGSSGGVSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTK
RLIQFEAR*
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mRNA from alignment at Contig_84:64604..65347+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12092 ID=mRNA_12092|Name=jgi.p|Trimin1|171685|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=744bp|location=Sequence derived from alignment at Contig_84:64604..65347+ (Tribonema minus UTEX_B_3156 )
ATGGATGAGGACGGCGGGGGCGGGGGTGGAAGCAGCGGTGGCGTGTCCTA
TATATGCGGAGGTAAGTCTGCTGCTGTACAGCATGTTGCTTCGGTCTACA
GCGCGAGCAGCCCAAGAAAGATCGAGGTACAGTTGAAGTTGGGAAACTCT
GTTTTGTGCCGAGTGGATGTGGATTGACTTGCCGGTTCAGTATCGATCAA
CACACCCGCATGGGACTGGTGCCGCCATGTTGCGAAGTTTTGACAACCGA
GTCCGTAGCGTGATGTTGTAAATCCAATCTCGCTGCGACGGATTTTTGAA
ACTTGAACACTGCTCTGTTCATTGCGTATCATGAGGTTGTTGAGGTAGGT
CATGTGCTTGTTTAAGCTTTCATTGCACTTCACCAGACTGGCTGATTCAG
AAAGGCACATGGAAGACACCTGGTAACAAAACCTTGACTTTTTCCAAACA
CGCCTGTGGATTGCGTTTGATGAGACATCTGGCCCATTGTCGCTTGCTTG
ATACTTCGCAGAATCTCTACATGCTCAGATTGTGGTACACCCCTGTCACA
GGGCCTGCCTGAAGGTCTTTCCAATAAATGGTGTGTTACTTGCACTTGTT
GCCTGCTTTGCACTGCATCTTGTGCCAGACTGTGGGACGACCAATGAGAT
CAAGGCCAAGGACCCCATTCAGTGCCGCTCCTGCGGCTACAGAATCATGT
ATAAGATGCGGACCAAGCGTCTGATACAGTTTGAGGCAAGATGA
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Coding sequence (CDS) from alignment at Contig_84:64604..65347+

>mRNA_12092 ID=mRNA_12092|Name=jgi.p|Trimin1|171685|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=177bp|location=Sequence derived from alignment at Contig_84:64604..65347+ (Tribonema minus UTEX_B_3156 )
ATGGATGAGGACGGCGGGGGCGGGGGTGGAAGCAGCGGTGGCGTGTCCTA
TATATGCGGAGACTGTGGGACGACCAATGAGATCAAGGCCAAGGACCCCA
TTCAGTGCCGCTCCTGCGGCTACAGAATCATGTATAAGATGCGGACCAAG
CGTCTGATACAGTTTGAGGCAAGATGA
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