mRNA_12083 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|94511
Unique NamemRNA_12083
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|94511 vs. uniprot
Match: A0A835YIM3_9STRA (Uncharacterized protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM3_9STRA)

HSP 1 Score: 137 bits (344), Expect = 3.080e-39
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:   16 MSIEERTRLAIIGEELEDEIMSKATALRDLADSMVEQTGAVDEKQLRPLIDEIGELKTQYRAVLGGVVRSNAP 234
            MSIEERTRLAIIGEELEDEIMSKATALRDLADSMVEQTGAVDEKQLRPLIDEIGELKTQYRAVLGGVVRSNAP
Sbjct:    1 MSIEERTRLAIIGEELEDEIMSKATALRDLADSMVEQTGAVDEKQLRPLIDEIGELKTQYRAVLGGVVRSNAP 73
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BLAST of jgi.p|Trimin1|94511 vs. uniprot
Match: A0A835YT28_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT28_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.340e-17
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:  280 MVAVPPLRCIYSCAHSSGGTASFSSQNILGTVARAHSRVRG 402
            MVAVPPLRCIYSCAHSSGGTASFSSQNILGTVARAHSR  G
Sbjct:    1 MVAVPPLRCIYSCAHSSGGTASFSSQNILGTVARAHSRCAG 41
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BLAST of jgi.p|Trimin1|94511 vs. uniprot
Match: D7FKG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG2_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.120e-11
Identity = 34/69 (49.28%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    4 AVREMSIEERTRLAIIGEELEDEIMSKATALRDLADSMVEQTGAVDEKQLRPLIDEIGELKTQYRAVLG 210
            A R+++ EER + A+ GE+LEDEI+  AT LR+ AD MV +TGA++ + ++P+IDEI  LK++Y+ V+G
Sbjct:   19 ATRDLAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMG 87
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|94511 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YIM3_9STRA3.080e-39100.00Uncharacterized protein n=3 Tax=Tribonema minus Ta... [more]
A0A835YT28_9STRA2.340e-1795.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FKG2_ECTSI1.120e-1149.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_84contigContig_84:16805..18747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|94511|CE94510_13
Hectar predicted targeting categoryother localisation
TranscriptId94833
TrackFilteredModels1
ProteinId94511
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|94511gene_12083Tribonema minus UTEX_B_3156 geneContig_84 16805..18747 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|94511Trimin1|94511|CE94510_13Tribonema minus UTEX_B_3156 polypeptideContig_84 17078..18732 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12083_3exon_12083_3Tribonema minus UTEX_B_3156 exonContig_84 16805..17139 -
exon_12083_2exon_12083_2Tribonema minus UTEX_B_3156 exonContig_84 17731..17863 -
exon_12083_1exon_12083_1Tribonema minus UTEX_B_3156 exonContig_84 18706..18747 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12083UTR3_12083Tribonema minus UTEX_B_3156 three_prime_UTRContig_84 16805..17077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12083CDS_12083Tribonema minus UTEX_B_3156 CDSContig_84 18706..18732 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_12083UTR5_12083Tribonema minus UTEX_B_3156 five_prime_UTRContig_84 18733..18747 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12083 ID=mRNA_12083|Name=jgi.p|Trimin1|94511|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=510bp|location=Sequence derived from alignment at Contig_84:16805..18747- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCAGCAGTGAGGGAGATGAGCATAGAAGAGCGAACACGATTGGCTATCAT
TGGGGAGGAGCTGGAGGATGAGATCATGTCAAAGGCGACGGCGCTGCGCG
ATCTGGCGGATTCAATGGTGGAGCAAACGGGCGCTGTGGATGAGAAGCAG
CTGCGGCCACTGATTGACGAAATAGGCGAGCTCAAGACGCAGTACAGGGC
TGTACTGGGGGGAGTCGTGAGGAGCAACGCACCCTGAGCATACCAAGCAT
CAGCACCTTATTAAGCCAAGTTTACACTGATGGTGGCTGTGCCGCCACTG
CGGTGCATATACTCATGTGCACACAGCAGCGGCGGCACTGCCTCTTTTAG
CTCACAGAATATTCTGGGTACTGTCGCCCGAGCACACTCCCGGGTGCGCG
GGCTCTTGCAGAGTGTCATGCCAAACAGAGGGCAATAGTGACACTTAGCA
ATGGCATGAACATGTTCTGGCATAACTTACACAGATAGTTAGTGCCTTTG
TACAGGTGCA
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protein sequence of jgi.p|Trimin1|94511

>Trimin1|94511|CE94510_13 ID=Trimin1|94511|CE94510_13|Name=jgi.p|Trimin1|94511|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=74bp
MSIEERTRLAIIGEELEDEIMSKATALRDLADSMVEQTGAVDEKQLRPLI
DEIGELKTQYRAVLGGVVRSNAP*
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mRNA from alignment at Contig_84:16805..18747-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12083 ID=mRNA_12083|Name=jgi.p|Trimin1|94511|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1943bp|location=Sequence derived from alignment at Contig_84:16805..18747- (Tribonema minus UTEX_B_3156 )
GCAGCAGTGAGGGAGATGAGCATAGAAGAGCGAACACGATTGGTGAGAGG
GCTTTCATTTTGTACCATCAGTGTCATCCAAGTGACCACATGCTGGCAGG
CACTTGATTGCAGATACTATACTGTATCAATTGCCACGACAGCAACATCA
CACAAGAAGCGTGGTTGGTGCTGTGACGGCACGACCTGTTTGACAGCACC
TTGGCTGTCTCCTCTGCTTGCCGACTAACATCGAAGCCCGACTGTGCATC
CAGTAACATAGTTTTGGGTGATGGGCAAGCTGCGCATTCAATGCCGCCAT
TTCAAAGAACAAATGACTTGAGGCAAATGGTGACCTGCAACGGCTGTGGC
CTGATGACACAGGCTACAATAGCTAACACTACAGCAAACTCTGCAACAGT
AGGCTTGCGACGCCCCTGAACAACAACATGCTCACATACCTACACGCTGC
TGTGCCAACATTTGACCCAGGGTGTCTCATAGAAGGCAAAAAATGGAAGC
GGAGCCACAATAAAGTAACAAAAGACAGTCGTCCCTGTGCATTGCCTGCG
GGCAGATACACAACAGTTTTCAGCCAGGTGTCCGTTGCAGTGCAAACAGG
AATCTCATCTGTAGTTTACATCATCTGTGACCAGCAAGCGCTTTTGCCCG
AGGGCAAATGCAGGCCGCAATATGTTGACTGTGGTTGATGGCACCCGTAC
TTCAATCTCACCACCGATTGCAGTCACGTGGTCTCTGTCTGAACCTGCGG
CAAGTGTTGCGCGCTGCAGCAGCTTTGCAGCGAGCAACAGCCAGCCTGCT
GAGATGTCATGACAGCGCTCAATGAGAGTTCAACATTGTGGGGGCTGACA
GCGCCCACTGCGTTACACCATCTTCCAAATACAGGCTATCATTGGGGAGG
AGCTGGAGGATGAGATCATGTCAAAGGCGACGGCGCTGCGCGATCTGGCG
GATTCAATGGTGGAGCAAACGGGCGCTGTGGATGAGAAGCAGCTGCGGCC
ACTGATTGACGAAATAGGTACGCAGGCAGGTTTTGTGATACTTAAACATT
AAGTTAAAGCCCAGATGGGTTTGATTAGTCTCATGTCAACAACAGCGCCT
TCGCATTACACGCGCCCTCTGAAGGTTCTGTGCAGAGCATTTCGTAAAGG
AAAGCAACTACCTCTATGTTTGTCGCAAAAGCTCTCTGGGCGCATGCTGT
CTCGGCTTCTCAGGAGCTCAAGCATGCATTGCAACCTGAGGCCATTGCTC
GCGTTGTTTGCAATGAACGCCCGCAAGCTGATTGCGTAAGTGGTGTGATT
TGTGACAAGCACCCATGAGCTCATGAAGTCCAGCATGATAGTTTTGCATG
CATGACAACTGGTTCCAGCAACTGAGTGACACTGTTGGCACAGTGCATCC
ATCACAGCTACTCTGTACAAAAGTAGCGAAAAGCTTTGTTTACGGCAAGA
TGTTCCAGCCCATTGGCCTGACAATGTTGGCACAGTGTATGTACTCAACG
CTATCGGTAAGCATCGCATTAACGGAACTTTCAAAATGTACAAGTGTGTG
CATGGTGAAGACAAGCAACTGACTGAGCCACTGTTCGCTCTTTTGCAATC
GCATGCAGGCGAGCTCAAGACGCAGTACAGGGCTGTACTGGGGGGAGTCG
TGAGGAGCAACGCACCCTGAGCATACCAAGCATCAGCACCTTATTAAGCC
AAGTTTACACTGATGGTGGCTGTGCCGCCACTGCGGTGCATATACTCATG
TGCACACAGCAGCGGCGGCACTGCCTCTTTTAGCTCACAGAATATTCTGG
GTACTGTCGCCCGAGCACACTCCCGGGTGCGCGGGCTCTTGCAGAGTGTC
ATGCCAAACAGAGGGCAATAGTGACACTTAGCAATGGCATGAACATGTTC
TGGCATAACTTACACAGATAGTTAGTGCCTTTGTACAGGTGCA
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Coding sequence (CDS) from alignment at Contig_84:16805..18747-

>mRNA_12083 ID=mRNA_12083|Name=jgi.p|Trimin1|94511|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=222bp|location=Sequence derived from alignment at Contig_84:16805..18747- (Tribonema minus UTEX_B_3156 )
ATGAGCATAGAAGAGCGAACACGATTGGCTATCATTGGGGAGGAGCTGGA
GGATGAGATCATGTCAAAGGCGACGGCGCTGCGCGATCTGGCGGATTCAA
TGGTGGAGCAAACGGGCGCTGTGGATGAGAAGCAGCTGCGGCCACTGATT
GACGAAATAGGCGAGCTCAAGACGCAGTACAGGGCTGTACTGGGGGGAGT
CGTGAGGAGCAACGCACCCTGA
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