mRNA_11965 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|351199
Unique Name	mRNA_11965
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|351199 vs. uniprot
Match: A0A835YLQ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLQ8_9STRA)

HSP 1 Score: 402 bits (1034), Expect = 1.110e-140
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 1

Query:    1 MDTLNGIVTAQDVVRDDKPCTVYEGSGGRGHTTGFRSTKQGFGRHNRGRQDVMGDNCYYPPPPPVVIPTASXXXXXXXXXXXXXXXXXXXXXXPIGGVVYFPMDYEVGRTEEDVARNDKRCEVYEGSGAGGGRTKGFKTTKRGFGTHNRGRDDVLGAYDVSPTVCGGTVDPTLTFYPMDVLNGITADDVGRGDKNNSVYEGSGGLGGTQGFPILLDL 651
            MDTLNGIVTAQDVVRDDKPCTVYEGSGGRGHTTGFRSTKQGFGRHNRGRQDVMGDNCYYPPPPPVVIPTASXXXXXXXXXXXXXXXXXXXXXXPIGGVVYFPMDYEVGRTEEDVARNDKRCEVYEGSGAGGGRTKGFKTTKRGFGTHNRGRDDVLGAYDVSPTVCGGTVDPTLTFYPMDVLNGITADDVGRGDKNNSVYEGSGGLGGTQGFPILLDL
Sbjct:    1 MDTLNGIVTAQDVVRDDKPCTVYEGSGGRGHTTGFRSTKQGFGRHNRGRQDVMGDNCYYPPPPPVVIPTASXXXXXXXXXXXXXXXXXXXXXXPIGGVVYFPMDYEVGRTEEDVARNDKRCEVYEGSGAGGGRTKGFKTTKRGFGTHNRGRDDVLGAYDVSPTVCGGTVDPTLTFYPMDVLNGITADDVGRGDKNNSVYEGSGGLGGTQGFPILLDL 217

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351199 vs. uniprot

BLAST of jgi.p|Trimin1|351199 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YLQ8_9STRA	1.110e-140	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_83	contig	Contig_83:313106..315135 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|351199\|estExt_Genemark1.C_Ctg_830026
Hectar predicted targeting category	other localisation
TranscriptId	351521
Track	FilteredModels1
ProteinId	351199

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351199	gene_11965	Tribonema minus UTEX_B_3156	gene	Contig_83 313106..315135 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_11965_1	exon_11965_1	Tribonema minus UTEX_B_3156	exon	Contig_83 313106..313738 +
exon_11965_2	exon_11965_2	Tribonema minus UTEX_B_3156	exon	Contig_83 314984..315135 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_11965	CDS_11965	Tribonema minus UTEX_B_3156	CDS	Contig_83 313106..313738 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_11965	UTR3_11965	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_83 315005..315135 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351199	Trimin1\|351199\|estExt_Genemark1.C_Ctg_830026	Tribonema minus UTEX_B_3156	polypeptide	Contig_83 313106..315004 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_83:313106..315135+
coding sequence from alignment at Contig_83:313106..315135+

spliced messenger RNA

>mRNA_11965 ID=mRNA_11965|Name=jgi.p|Trimin1|351199|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=785bp|location=Sequence derived from alignment at Contig_83:313106..315135+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACACTCTCAACGGAATTGTTACAGCGCAAGACGTTGTCCGTGATGA
CAAGCCCTGCACTGTGTACGAGGGCAGTGGCGGACGCGGCCACACCACGG
GGTTCCGCTCCACCAAGCAAGGCTTCGGGCGCCACAACAGGGGGCGGCAG
GATGTGATGGGCGACAACTGCTACTATCCGCCGCCGCCGCCTGTTGTCAT
ACCTACCGCTTCTCCGACCACGGCGCCAACCAGCATGCCCACCAGGGCTC
CCACCATGGCTCCCACAGCTGCGCCCACGCCTATTGGCGGCGTCGTCTAC
TTTCCAATGGACTATGAGGTCGGCCGCACCGAGGAGGACGTTGCACGCAA
CGACAAGCGCTGCGAGGTGTATGAGGGCAGCGGCGCGGGCGGCGGCCGCA
CCAAGGGCTTCAAAACCACCAAGCGCGGGTTTGGCACGCACAACAGGGGC
AGAGACGACGTACTCGGCGCTTACGACGTGAGCCCTACGGTGTGCGGCGG
AACCGTTGACCCCACCCTCACCTTCTACCCCATGGACGTGCTTAACGGTA
TCACTGCAGATGACGTGGGGCGCGGCGACAAGAACAATTCGGTGTACGAA
GGCAGTGGCGGGCTCGGGGGAACTCAGGGATTCCCCATTCTGCTGGATCT
GTGAAACGAAGGGCGCTGCCACCGCTGATCAGCAAGCGGCTTGCCGCATG
AACCCTGTTCAAATGCCCCGGCCTATGGTAGTCCAAGGCAACGAGAGTGC
CTTGCCAGTCATAAAGCATGCCCCACCCCCGCCCC

protein sequence of jgi.p|Trimin1|351199

>Trimin1|351199|estExt_Genemark1.C_Ctg_830026 ID=Trimin1|351199|estExt_Genemark1.C_Ctg_830026|Name=jgi.p|Trimin1|351199|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=218bp
MDTLNGIVTAQDVVRDDKPCTVYEGSGGRGHTTGFRSTKQGFGRHNRGRQ
DVMGDNCYYPPPPPVVIPTASPTTAPTSMPTRAPTMAPTAAPTPIGGVVY
FPMDYEVGRTEEDVARNDKRCEVYEGSGAGGGRTKGFKTTKRGFGTHNRG
RDDVLGAYDVSPTVCGGTVDPTLTFYPMDVLNGITADDVGRGDKNNSVYE
GSGGLGGTQGFPILLDL*

mRNA from alignment at Contig_83:313106..315135+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11965 ID=mRNA_11965|Name=jgi.p|Trimin1|351199|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2030bp|location=Sequence derived from alignment at Contig_83:313106..315135+ (Tribonema minus UTEX_B_3156 )
ATGGACACTCTCAACGGAATTGTTACAGCGCAAGACGTTGTCCGTGATGA
CAAGCCCTGCACTGTGTACGAGGGCAGTGGCGGACGCGGCCACACCACGG
GGTTCCGCTCCACCAAGCAAGGCTTCGGGCGCCACAACAGGGGGCGGCAG
GATGTGATGGGCGACAACTGCTACTATCCGCCGCCGCCGCCTGTTGTCAT
ACCTACCGCTTCTCCGACCACGGCGCCAACCAGCATGCCCACCAGGGCTC
CCACCATGGCTCCCACAGCTGCGCCCACGCCTATTGGCGGCGTCGTCTAC
TTTCCAATGGACTATGAGGTCGGCCGCACCGAGGAGGACGTTGCACGCAA
CGACAAGCGCTGCGAGGTGTATGAGGGCAGCGGCGCGGGCGGCGGCCGCA
CCAAGGGCTTCAAAACCACCAAGCGCGGGTTTGGCACGCACAACAGGGGC
AGAGACGACGTACTCGGCGCTTACGACGTGAGCCCTACGGTGTGCGGCGG
AACCGTTGACCCCACCCTCACCTTCTACCCCATGGACGTGCTTAACGGTA
TCACTGCAGATGACGTGGGGCGCGGCGACAAGAACAATTCGGTGTACGAA
GGCAGTGGCGGGCTCGGGGGAACTCAGGGATTCGTGACATCCAAGCGAGG
CTTCGGTGCCACTAACAGGGGAAGGAGTGACCTCATGGGTTAGCAGGTAC
AGAGTGTTGTTGGATGATCCTCTCCTGTAGCTGCCGGTGCTCAGTCTCGT
CTGACTTCTCACCCTAGCCTCGGTGTAAGTGGGGCGCAACCAAAAGCGAC
TACAAGCGCTGCTGCCTGCTGCCCTGCAGTAGTGGCCTTCGAATGATAGT
CTTTCCGAGATGATGCATGTTCCTAGCGTGTTGGCTGTGCTTAGATTGCC
ACAAACCTGTTCCGTAAAGTGGTGTGTGATGAGGCGCGTGTCTGTCTGTA
GCTTGCGCCCTGTGCCCTGTGCCCTCTGGCGCTGGCTGGTCATTCGACTA
AGTTGAAGTACGGCTCCAACTCCAACAATACCAGATACTTGTGTTGACAC
TGGTGCGCGTGTGCGCGTTGTCTTGCCTGCATGAACGTCAGGGGATGCCA
AGTTGAACAACATTCGCGGCCTGTTGTGGCAGCAAATTTTGTGCTGAGAC
TCTCACCTTGAGAGCACGTATGCCTGTCCCTCTGCACCTGTGGTCACATC
ATTGAGTAGGCCTGCATGTGCCATTGTCATGAGTGTTCAGCTTGCCCAAG
TCCTGGTCGCTGGAACAGAGAAGGCAGTGGCTGCTAGCGTGCGATGCAGC
ATGCGTACAGTGTGATTGTGCACACAGGCAAAACGGTAGTACATCTGCAA
CTGCCTGAGTTCACTGTGATGCTGTTCAACCAGGAATTTGCCGTGTCTCC
AGGTGAGTTGACGCAACTGCATGACATCGGCTCTGATGAGGCGGATGTGC
CTCAGAATGATGCGACATACGCAAGCAAGCCAATACTGATGGCAGGCATA
TATGATGCCAACTTTTTTGACAATGATAGTGACTGGTGCATGCCAGAGGT
TGATGATAGGGAAGCGTACAACAACACACACTCATGCAAGCAGATCAAGC
GGCATCATTGCTGACTCCACCACGCACAACAAAGCTGAGCATTGCAGCAG
GCGTAGACGCAATATAACGTATACTCAAAAACAAAACTGGCCATGGTCCA
TTGAGCTTGAGTGCAACATGCTTGCCACTCAATGTCCTGTTGCACTGTCT
GGTGAAGCATTGGGCCATCCCTTCAGCCAGCCTAAGCGCTATGTGATGAT
GATGTGTGATTGGTTGCTGTGTCTCATGAAAGCTTTACATTTGCGACGCC
AAAATCAGCACCTTCCTGACACGCGCAGCCCATTCTGCTGGATCTGTGAA
ACGAAGGGCGCTGCCACCGCTGATCAGCAAGCGGCTTGCCGCATGAACCC
TGTTCAAATGCCCCGGCCTATGGTAGTCCAAGGCAACGAGAGTGCCTTGC
CAGTCATAAAGCATGCCCCACCCCCGCCCC

Coding sequence (CDS) from alignment at Contig_83:313106..315135+

>mRNA_11965 ID=mRNA_11965|Name=jgi.p|Trimin1|351199|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=654bp|location=Sequence derived from alignment at Contig_83:313106..315135+ (Tribonema minus UTEX_B_3156 )
ATGGACACTCTCAACGGAATTGTTACAGCGCAAGACGTTGTCCGTGATGA
CAAGCCCTGCACTGTGTACGAGGGCAGTGGCGGACGCGGCCACACCACGG
GGTTCCGCTCCACCAAGCAAGGCTTCGGGCGCCACAACAGGGGGCGGCAG
GATGTGATGGGCGACAACTGCTACTATCCGCCGCCGCCGCCTGTTGTCAT
ACCTACCGCTTCTCCGACCACGGCGCCAACCAGCATGCCCACCAGGGCTC
CCACCATGGCTCCCACAGCTGCGCCCACGCCTATTGGCGGCGTCGTCTAC
TTTCCAATGGACTATGAGGTCGGCCGCACCGAGGAGGACGTTGCACGCAA
CGACAAGCGCTGCGAGGTGTATGAGGGCAGCGGCGCGGGCGGCGGCCGCA
CCAAGGGCTTCAAAACCACCAAGCGCGGGTTTGGCACGCACAACAGGGGC
AGAGACGACGTACTCGGCGCTTACGACGTGAGCCCTACGGTGTGCGGCGG
AACCGTTGACCCCACCCTCACCTTCTACCCCATGGACGTGCTTAACGGTA
TCACTGCAGATGACGTGGGGCGCGGCGACAAGAACAATTCGGTGTACGAA
GGCAGTGGCGGGCTCGGGGGAACTCAGGGATTCCCCATTCTGCTGGATCT
GTGA