mRNA_12003 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|171553
Unique Name	mRNA_12003
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|171553 vs. uniprot
Match: A0A836C8K8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K8_9STRA)

HSP 1 Score: 223 bits (569), Expect = 1.750e-62
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 1

Query:    1 MLCKSAWGLCQALRTRNRVRLTLKLLEPPAEVAARIVAVKQVTSLALSGSFADDDTHLLESIPDSIGQLAALKTLKVRGCSFTALXXXXXXXXXXXVLNIEHRNGLTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVTRTXXXXXXXXXXXXXXXXVKICALTXXXXXXXXXXXXXXXFIEHCNGLXXXXXXXXXXXXXXMLKVSCETETLXXXXXXXXXXXXXXXXXVFCNGLXXXXXXXXXXXXXXXXDIYRSGGV 876
            MLCKSAWGLCQALRTRNRVRLTLKLLEPPAEVAARIVAVKQVTSLALSGSFADDDTHLLESIPDSIGQLAALKTLKVRGCSFTALXXXXXXXXXXXVLNIEHRNGLTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVTRTXXXXXXXXXXXXXXXXVKICALTXXXXXXXXXXXXXXXFIEHCNGLXXXXXXXXXXXXXXMLKVSCETETLXXXXXXXXXXXXXXXXXVFCNGLXXXXXXXXXXXXXXXXDIYRSGGV
Sbjct:    1 MLCKSAWGLCQALRTRNRVRLTLKLLEPPAEVAARIVAVKQVTSLALSGSFADDDTHLLESIPDSIGQLAALKTLKVRGCSFTALXXXXXXXXXXXVLNIEHRNGLTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVTRTXXXXXXXXXXXXXXXXVKICALTXXXXXXXXXXXXXXXFIEHCNGLXXXXXXXXXXXXXXMLKVSCETETLXXXXXXXXXXXXXXXXXVFCNGLXXXXXXXXXXXXXXXXDIYRSGGV 292

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|171553 vs. uniprot

BLAST of jgi.p|Trimin1|171553 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836C8K8_9STRA	1.750e-62	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_83	contig	Contig_83:608216..609847 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|171553\|e_gw1.83.84.1
Hectar predicted targeting category	mitochondrion
TranscriptId	171875
Track	FilteredModels1
ProteinId	171553

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|171553	gene_12003	Tribonema minus UTEX_B_3156	gene	Contig_83 608216..609847 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_12003_1	exon_12003_1	Tribonema minus UTEX_B_3156	exon	Contig_83 608216..609847 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_12003	CDS_12003	Tribonema minus UTEX_B_3156	CDS	Contig_83 608216..609847 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|171553	Trimin1\|171553\|e_gw1.83.84.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_83 608216..609847 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_83:608216..609847-
coding sequence from alignment at Contig_83:608216..609847-

spliced messenger RNA

>mRNA_12003 ID=mRNA_12003|Name=jgi.p|Trimin1|171553|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1632bp|location=Sequence derived from alignment at Contig_83:608216..609847- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTGCAAATCCGCCTGGGGACTGTGTCAAGCTCTGAGGACAAGAAA
CCGGGTCAGATTGACCTTGAAACTTCTGGAACCCCCAGCAGAAGTGGCAG
CTCGCATTGTGGCCGTGAAACAGGTCACCAGTCTCGCGTTGTCTGGCTCC
TTCGCGGACGACGACACACATCTGCTTGAATCAATTCCGGACAGCATAGG
CCAGCTGGCGGCGCTAAAGACGCTTAAAGTCAGAGGGTGTTCCTTCACAG
CTCTGCCGGAAAGCATAGGCCAGCTGGCGGCGTTGGATGTGCTTAATATC
GAACATCGCAACGGGCTCACAGCTCTGCCGGAAAGCATAGGCCAGCTGGC
GGCGCTGCGGACGCTCAAAGTCGAGACATGCGCCCTCACTGCGCTGCTGG
AAAGCATAGGCCAGCTGGCGGCGTTGGAGGTGCTTAATATCGAAGATTGC
AACGGGCTCACAGCTCTGCCGGAAAGCATAGGCCAGCTGGCGGCGCTGCA
GACGCTCACAGTCACCCGCACTGCGCTGCCGGAAAGCATAGGCCAGCTGG
CAACGCTGCAGATGCTCACAGTCAAGATATGCGCCCTCACTGCGCTGCCG
GAAAGCATTGGCCAGCTGGCGGCGTTGGAGGTGCTTTTTATCGAACATTG
CAACGGGCTCACAGCTCTGCCGGAAAGCATAGGCCAGCTGGCGGCGCTGC
GGATGCTCAAAGTCAGCTGCGAGACCGAGACCCTCACTGCGCTGCCGGAG
AGCATCGGCCAGCTGGCGGCGCTGCGGACACTCCAAGTGTTTTGCAATGG
GCTCACCGTACTGCCGGACAGCATCGGGCAGCTGACGGCGCTGGAGACAC
TTGATATTTACCGGAGCGGGGGGGTCACCGTGCTGCCGGACAGCATCGGC
CAGCTGGCGGCACTAGTAACGCTTGAAGTCGGATGTTGTGATTCCCTCAC
TGCGCTGCCAGACAGCATCGTCCAGCTGGCGGCGCTGAAGACGCTCGCAG
TCAATGAATGCGAGGCTCTCACAGTGCTGCCGGAAGGCATCGGCCAGCTG
GCGGCGTTGGAGGGGCTTAATATCGAAAATTGCAGCGGGCTCACAGCTCT
GCCGGAAAGCATTGGCCAGCTGGCGGCGCTGAGGACGCTCAAAGTAGATG
AGTGCCAGGGGCTCACCGCGCTGCCGGACAGCATCGGCCAGCTGGCGGCG
CTGAGGACGCTAAAAGTCTATGACTGCGAGGGGCTCACTGCGCTACCGGA
AAGCATCGGCGAGACGGCGACATTGAATGATCTTGTCATCCAGGGGGTAT
CGCTCACCACACTGCCGGACAGCATCAGCCAGCTGGCGGCGCTGAAGACG
CTTGGTATTTCCCTGTGCGGGGGGCTCACCGCGCTGCCGGAAAGCATAGG
CCAGCTGGTGGCGTTGGAGGAGCTTAATATCGAATATTGCAGCGGGCTCA
CAGCTCTGCCGGAAGGCATCGGCCGGCTGGCGGCGCTGCGGAGACTCGTC
GTCCACGACTGTGAGGCCCTCACTGCGCTGCCGGACAGCATAAGTCACCT
GCCGGCGCTGCAGCACGTCGACATCACAGGCACGCGCTGCACAAGGTTCA
ATGTGCGCGGTTGCGTCATCATTTGCCGGTGA

protein sequence of jgi.p|Trimin1|171553

>Trimin1|171553|e_gw1.83.84.1 ID=Trimin1|171553|e_gw1.83.84.1|Name=jgi.p|Trimin1|171553|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=544bp
MLCKSAWGLCQALRTRNRVRLTLKLLEPPAEVAARIVAVKQVTSLALSGS
FADDDTHLLESIPDSIGQLAALKTLKVRGCSFTALPESIGQLAALDVLNI
EHRNGLTALPESIGQLAALRTLKVETCALTALLESIGQLAALEVLNIEDC
NGLTALPESIGQLAALQTLTVTRTALPESIGQLATLQMLTVKICALTALP
ESIGQLAALEVLFIEHCNGLTALPESIGQLAALRMLKVSCETETLTALPE
SIGQLAALRTLQVFCNGLTVLPDSIGQLTALETLDIYRSGGVTVLPDSIG
QLAALVTLEVGCCDSLTALPDSIVQLAALKTLAVNECEALTVLPEGIGQL
AALEGLNIENCSGLTALPESIGQLAALRTLKVDECQGLTALPDSIGQLAA
LRTLKVYDCEGLTALPESIGETATLNDLVIQGVSLTTLPDSISQLAALKT
LGISLCGGLTALPESIGQLVALEELNIEYCSGLTALPEGIGRLAALRRLV
VHDCEALTALPDSISHLPALQHVDITGTRCTRFNVRGCVIICR*

mRNA from alignment at Contig_83:608216..609847-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12003 ID=mRNA_12003|Name=jgi.p|Trimin1|171553|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1632bp|location=Sequence derived from alignment at Contig_83:608216..609847- (Tribonema minus UTEX_B_3156 )
ATGCTGTGCAAATCCGCCTGGGGACTGTGTCAAGCTCTGAGGACAAGAAA
CCGGGTCAGATTGACCTTGAAACTTCTGGAACCCCCAGCAGAAGTGGCAG
CTCGCATTGTGGCCGTGAAACAGGTCACCAGTCTCGCGTTGTCTGGCTCC
TTCGCGGACGACGACACACATCTGCTTGAATCAATTCCGGACAGCATAGG
CCAGCTGGCGGCGCTAAAGACGCTTAAAGTCAGAGGGTGTTCCTTCACAG
CTCTGCCGGAAAGCATAGGCCAGCTGGCGGCGTTGGATGTGCTTAATATC
GAACATCGCAACGGGCTCACAGCTCTGCCGGAAAGCATAGGCCAGCTGGC
GGCGCTGCGGACGCTCAAAGTCGAGACATGCGCCCTCACTGCGCTGCTGG
AAAGCATAGGCCAGCTGGCGGCGTTGGAGGTGCTTAATATCGAAGATTGC
AACGGGCTCACAGCTCTGCCGGAAAGCATAGGCCAGCTGGCGGCGCTGCA
GACGCTCACAGTCACCCGCACTGCGCTGCCGGAAAGCATAGGCCAGCTGG
CAACGCTGCAGATGCTCACAGTCAAGATATGCGCCCTCACTGCGCTGCCG
GAAAGCATTGGCCAGCTGGCGGCGTTGGAGGTGCTTTTTATCGAACATTG
CAACGGGCTCACAGCTCTGCCGGAAAGCATAGGCCAGCTGGCGGCGCTGC
GGATGCTCAAAGTCAGCTGCGAGACCGAGACCCTCACTGCGCTGCCGGAG
AGCATCGGCCAGCTGGCGGCGCTGCGGACACTCCAAGTGTTTTGCAATGG
GCTCACCGTACTGCCGGACAGCATCGGGCAGCTGACGGCGCTGGAGACAC
TTGATATTTACCGGAGCGGGGGGGTCACCGTGCTGCCGGACAGCATCGGC
CAGCTGGCGGCACTAGTAACGCTTGAAGTCGGATGTTGTGATTCCCTCAC
TGCGCTGCCAGACAGCATCGTCCAGCTGGCGGCGCTGAAGACGCTCGCAG
TCAATGAATGCGAGGCTCTCACAGTGCTGCCGGAAGGCATCGGCCAGCTG
GCGGCGTTGGAGGGGCTTAATATCGAAAATTGCAGCGGGCTCACAGCTCT
GCCGGAAAGCATTGGCCAGCTGGCGGCGCTGAGGACGCTCAAAGTAGATG
AGTGCCAGGGGCTCACCGCGCTGCCGGACAGCATCGGCCAGCTGGCGGCG
CTGAGGACGCTAAAAGTCTATGACTGCGAGGGGCTCACTGCGCTACCGGA
AAGCATCGGCGAGACGGCGACATTGAATGATCTTGTCATCCAGGGGGTAT
CGCTCACCACACTGCCGGACAGCATCAGCCAGCTGGCGGCGCTGAAGACG
CTTGGTATTTCCCTGTGCGGGGGGCTCACCGCGCTGCCGGAAAGCATAGG
CCAGCTGGTGGCGTTGGAGGAGCTTAATATCGAATATTGCAGCGGGCTCA
CAGCTCTGCCGGAAGGCATCGGCCGGCTGGCGGCGCTGCGGAGACTCGTC
GTCCACGACTGTGAGGCCCTCACTGCGCTGCCGGACAGCATAAGTCACCT
GCCGGCGCTGCAGCACGTCGACATCACAGGCACGCGCTGCACAAGGTTCA
ATGTGCGCGGTTGCGTCATCATTTGCCGGTGA

Coding sequence (CDS) from alignment at Contig_83:608216..609847-

>mRNA_12003 ID=mRNA_12003|Name=jgi.p|Trimin1|171553|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1632bp|location=Sequence derived from alignment at Contig_83:608216..609847- (Tribonema minus UTEX_B_3156 )
ATGCTGTGCAAATCCGCCTGGGGACTGTGTCAAGCTCTGAGGACAAGAAA
CCGGGTCAGATTGACCTTGAAACTTCTGGAACCCCCAGCAGAAGTGGCAG
CTCGCATTGTGGCCGTGAAACAGGTCACCAGTCTCGCGTTGTCTGGCTCC
TTCGCGGACGACGACACACATCTGCTTGAATCAATTCCGGACAGCATAGG
CCAGCTGGCGGCGCTAAAGACGCTTAAAGTCAGAGGGTGTTCCTTCACAG
CTCTGCCGGAAAGCATAGGCCAGCTGGCGGCGTTGGATGTGCTTAATATC
GAACATCGCAACGGGCTCACAGCTCTGCCGGAAAGCATAGGCCAGCTGGC
GGCGCTGCGGACGCTCAAAGTCGAGACATGCGCCCTCACTGCGCTGCTGG
AAAGCATAGGCCAGCTGGCGGCGTTGGAGGTGCTTAATATCGAAGATTGC
AACGGGCTCACAGCTCTGCCGGAAAGCATAGGCCAGCTGGCGGCGCTGCA
GACGCTCACAGTCACCCGCACTGCGCTGCCGGAAAGCATAGGCCAGCTGG
CAACGCTGCAGATGCTCACAGTCAAGATATGCGCCCTCACTGCGCTGCCG
GAAAGCATTGGCCAGCTGGCGGCGTTGGAGGTGCTTTTTATCGAACATTG
CAACGGGCTCACAGCTCTGCCGGAAAGCATAGGCCAGCTGGCGGCGCTGC
GGATGCTCAAAGTCAGCTGCGAGACCGAGACCCTCACTGCGCTGCCGGAG
AGCATCGGCCAGCTGGCGGCGCTGCGGACACTCCAAGTGTTTTGCAATGG
GCTCACCGTACTGCCGGACAGCATCGGGCAGCTGACGGCGCTGGAGACAC
TTGATATTTACCGGAGCGGGGGGGTCACCGTGCTGCCGGACAGCATCGGC
CAGCTGGCGGCACTAGTAACGCTTGAAGTCGGATGTTGTGATTCCCTCAC
TGCGCTGCCAGACAGCATCGTCCAGCTGGCGGCGCTGAAGACGCTCGCAG
TCAATGAATGCGAGGCTCTCACAGTGCTGCCGGAAGGCATCGGCCAGCTG
GCGGCGTTGGAGGGGCTTAATATCGAAAATTGCAGCGGGCTCACAGCTCT
GCCGGAAAGCATTGGCCAGCTGGCGGCGCTGAGGACGCTCAAAGTAGATG
AGTGCCAGGGGCTCACCGCGCTGCCGGACAGCATCGGCCAGCTGGCGGCG
CTGAGGACGCTAAAAGTCTATGACTGCGAGGGGCTCACTGCGCTACCGGA
AAGCATCGGCGAGACGGCGACATTGAATGATCTTGTCATCCAGGGGGTAT
CGCTCACCACACTGCCGGACAGCATCAGCCAGCTGGCGGCGCTGAAGACG
CTTGGTATTTCCCTGTGCGGGGGGCTCACCGCGCTGCCGGAAAGCATAGG
CCAGCTGGTGGCGTTGGAGGAGCTTAATATCGAATATTGCAGCGGGCTCA
CAGCTCTGCCGGAAGGCATCGGCCGGCTGGCGGCGCTGCGGAGACTCGTC
GTCCACGACTGTGAGGCCCTCACTGCGCTGCCGGACAGCATAAGTCACCT
GCCGGCGCTGCAGCACGTCGACATCACAGGCACGCGCTGCACAAGGTTCA
ATGTGCGCGGTTGCGTCATCATTTGCCGGTGA