mRNA_10993 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|171473
Unique NamemRNA_10993
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|171473 vs. uniprot
Match: A0A835YIZ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIZ8_9STRA)

HSP 1 Score: 845 bits (2184), Expect = 5.560e-307
Identity = 506/506 (100.00%), Postives = 506/506 (100.00%), Query Frame = 1 
Query:    1 MLQAALSSRDENAPPGVNQRAAXXXXXXXXXXXXXXXXXXXXDVSPAAALQRLSAAVAALNYQHFPEAIPQRAAQLAVLTRYVTDALAERCGTAIYVSGAPGTGKTCTLQQVEDAVRVWRGEGSXXXXXXXXXARPAFVHVDAAFQTSAKEVFQRILEKIPGNVQRSLRAGRGGSGGSSSGDARAQLEAMLAPPDNGSGXXXXXXXXAAKTMLVLTIEEVNYLRGRGDAVLQALFGWACAPNSRLVLIGVANNINLTETADIGVPSDAVTSVLFPTYTAVQLEEILTARAGGVFDPRAAALCAKRVAVRSGDARDALQLAQGAVIVVRKRIEAALASGGSGXXXXXXXXXSQVSSNVAATAAGLVTTRDVSAAAAAIDGASGRSTMGELAPAQKMLLCVIAALRAERCGDTPEVAAIMQRHAGAMLDAGFGTYQQGFQYALDALADGNLVEVQGGGIDRRDGGEKPRFVKLNVSDDDLRAVFTENVFKKVLPRAGGGGRGGGSACR 1518
            MLQAALSSRDENAPPGVNQRAAXXXXXXXXXXXXXXXXXXXXDVSPAAALQRLSAAVAALNYQHFPEAIPQRAAQLAVLTRYVTDALAERCGTAIYVSGAPGTGKTCTLQQVEDAVRVWRGEGSXXXXXXXXXARPAFVHVDAAFQTSAKEVFQRILEKIPGNVQRSLRAGRGGSGGSSSGDARAQLEAMLAPPDNGSGXXXXXXXXAAKTMLVLTIEEVNYLRGRGDAVLQALFGWACAPNSRLVLIGVANNINLTETADIGVPSDAVTSVLFPTYTAVQLEEILTARAGGVFDPRAAALCAKRVAVRSGDARDALQLAQGAVIVVRKRIEAALASGGSGXXXXXXXXXSQVSSNVAATAAGLVTTRDVSAAAAAIDGASGRSTMGELAPAQKMLLCVIAALRAERCGDTPEVAAIMQRHAGAMLDAGFGTYQQGFQYALDALADGNLVEVQGGGIDRRDGGEKPRFVKLNVSDDDLRAVFTENVFKKVLPRAGGGGRGGGSACR
Sbjct:    1 MLQAALSSRDENAPPGVNQRAAXXXXXXXXXXXXXXXXXXXXDVSPAAALQRLSAAVAALNYQHFPEAIPQRAAQLAVLTRYVTDALAERCGTAIYVSGAPGTGKTCTLQQVEDAVRVWRGEGSXXXXXXXXXARPAFVHVDAAFQTSAKEVFQRILEKIPGNVQRSLRAGRGGSGGSSSGDARAQLEAMLAPPDNGSGXXXXXXXXAAKTMLVLTIEEVNYLRGRGDAVLQALFGWACAPNSRLVLIGVANNINLTETADIGVPSDAVTSVLFPTYTAVQLEEILTARAGGVFDPRAAALCAKRVAVRSGDARDALQLAQGAVIVVRKRIEAALASGGSGXXXXXXXXXSQVSSNVAATAAGLVTTRDVSAAAAAIDGASGRSTMGELAPAQKMLLCVIAALRAERCGDTPEVAAIMQRHAGAMLDAGFGTYQQGFQYALDALADGNLVEVQGGGIDRRDGGEKPRFVKLNVSDDDLRAVFTENVFKKVLPRAGGGGRGGGSACR 506
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BLAST of jgi.p|Trimin1|171473 vs. uniprot
Match: A0A835YJC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJC9_9STRA)

HSP 1 Score: 506 bits (1304), Expect = 9.150e-176
Identity = 313/341 (91.79%), Postives = 315/341 (92.38%), Query Frame = 1 
Query:  241 RYVTDALAERCGTAIYVSGAPGTGKTCTLQQVEDAVRVWRGEGSXXXXXXXXXARPAFVHVDAAFQTSAKEVFQRILEKIPGNVQRSLRAGRGGSGGSSSG-----DARAQLEAMLAPPDNGSGXXXXXXXXAAKTMLVLTIEEVNYLRGRGDAVLQALFGWACAPNSRLVLIGVANNINLTETADIGVPSDAVTSVLFPTYTAVQLEEILTARAGGVFDPRAAALCAKRVAVRSGDARDALQLAQGAVIVVRKRIEAALASGGSGXXXXXXXXXSQVSSNVAATAAGLVTTRDVSAAAAAIDGASGRSTMGELAPAQKMLLCVIAALRAERCGDTPEVAA 1248
            RYVTDALAERCGTAIYVSGAPGTGKTCTLQQVEDAVRVW GEG XXXXXXXXXARPAFVHVDAAFQTSAKEVFQRILEKIP NVQRSLR GR G  G         DARAQLEAMLAP      XXXXXXXX  KTMLVLTIEEVNYLRGRGDAVLQALFGWACAPNSRLVLIGVANNINLTETADIGVPSDAV SVLFPTYTAVQLEEILTARAGG+FDPRAAALCAKRVAVRSGDARDALQLAQGAVIVVRKRIEAALASGGSGXXXXXXXXX QVSSNVAATAAG+VTTRDVSAAAAAIDGASGRSTMGELAPAQKMLLCVIAALRAERCGDTPEVAA
Sbjct:    2 RYVTDALAERCGTAIYVSGAPGTGKTCTLQQVEDAVRVWLGEGXXXXXXXXXXARPAFVHVDAAFQTSAKEVFQRILEKIPRNVQRSLRPGRSGGCGXXXXXXXXXDARAQLEAMLAPXXXXXXXXXXXXXXXXKTMLVLTIEEVNYLRGRGDAVLQALFGWACAPNSRLVLIGVANNINLTETADIGVPSDAVKSVLFPTYTAVQLEEILTARAGGIFDPRAAALCAKRVAVRSGDARDALQLAQGAVIVVRKRIEAALASGGSGXXXXXXXXXXQVSSNVAATAAGMVTTRDVSAAAAAIDGASGRSTMGELAPAQKMLLCVIAALRAERCGDTPEVAA 342
[Close]
BLAST of jgi.p|Trimin1|171473 vs. uniprot
Match: A0A835Z562_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z562_9STRA)

HSP 1 Score: 439 bits (1128), Expect = 4.470e-148
Identity = 271/406 (66.75%), Postives = 305/406 (75.12%), Query Frame = 1 
Query:  283 IYVSGAPGTGKTCTLQQVEDAVRVWRGEGSXXXXXXXXX---ARPAFVHVDAAFQTSAKEVFQRILEKIPGNVQRSLRAGRGGSGGSSSGDARAQLEAMLAPPDNGSGXXXXXXXXAAKTMLVLTIEEVNYLRGRGDAVLQALFGWACAPNSRLVLIGVANNINLTETADIGVPSDAVTSVLFPTYTAVQLEEILTARAGGVFDPRAAALCAKRVAVRSGDARDALQLAQGAVIVVRKRIEAALASGGS--GXXXXXXXXXSQVSSNVAATAAGLVTTRDVSAAAAAIDGASGRSTMGELAPAQKMLLCVIAALRAERCGDTPEVAAIMQRHAGAMLDAGFGTYQQGFQYALDALADGNLVEVQGGGIDRRDGGEKPRFVKLNVSDDDLRAVFTENVFKKVLPRAG 1485
            +YV GAPGTGKTCTLQ++E  VR W   GS XXXXXXXX   ARP F++VDA FQTS  +VFQR+L+KIP  VQ SLR  R G G     DARAQLEAMLAP      XXXXXXXX  KTMLVLTI+EVNYLRGRGD VLQALFGWACAPNSRL+LIGVAN IN T+ AD+GVPSDAV +++FPTYTA QL+EI+  RAG VF PRAAA+C KRVA RSGDAR+ LQLAQ A + VRKR++AALASG S            +QVSSNVAAT  G+VTTRD+SAA AA +GAS RST+GEL PA K+LLCVIA LRAE CG  PEV AI +R A AM DAGFGTYQQ F  AL  L D   V+V+GGG +R    +KPR VKLNVS DDLRAV T  V+KKVL  AG
Sbjct:    1 VYVCGAPGTGKTCTLQRLEHEVRTWLAGGSGXXXXXXXXXXXARPTFINVDAVFQTSPMQVFQRVLDKIPKTVQHSLRGKRSGGG-----DARAQLEAMLAPXXX-XXXXXXXXXXXTKTMLVLTIDEVNYLRGRGDPVLQALFGWACAPNSRLILIGVANGINFTKKADLGVPSDAVKTLVFPTYTAAQLKEIVAVRAGSVFQPRAAAVCVKRVAARSGDAREMLQLAQSAALAVRKRVQAALASGRSLDDDGGSSSGVGTQVSSNVAATV-GMVTTRDISAADAAFNGASNRSTIGELPPAHKLLLCVIAVLRAECCGKPPEVMAIKERFAYAMDDAGFGTYQQYFNSALQTLVDYGHVDVKGGGTNRFHWHQKPRLVKLNVSVDDLRAVLTAGVYKKVLRHAG 399
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BLAST of jgi.p|Trimin1|171473 vs. uniprot
Match: A0A835ZET1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZET1_9STRA)

HSP 1 Score: 165 bits (418), Expect = 6.090e-46
Identity = 85/112 (75.89%), Postives = 93/112 (83.04%), Query Frame = 1 
Query:  634 MLVLTIEEVNYLRGRGDAVLQALFGWACAPNSRLVLIGVANNINLTETADIGVPSDAVTSVLFPTYTAVQLEEILTARAGGVFDPRAAALCAKRVAVRSGDARDALQLAQGA 969
            MLVLT++E+ YLRGR D+VLQALFGWACAPNSRL+LIGVAN IN TE AD+GVPSDAV SV+FPTYTA QLEEI+  RAG VF PRA  LC KR A  SGDAR ALQLAQ A
Sbjct:    1 MLVLTVDEIYYLRGRSDSVLQALFGWACAPNSRLILIGVANGINFTEKADLGVPSDAVKSVVFPTYTAKQLEEIVATRAGSVFQPRATELCVKRTATYSGDARIALQLAQSA 112
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BLAST of jgi.p|Trimin1|171473 vs. uniprot
Match: A0A836CKC2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKC2_9STRA)

HSP 1 Score: 102 bits (253), Expect = 5.580e-19
Identity = 52/71 (73.24%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:  136 PAAALQRLSAAVAALNYQHFPEAIPQRAAQLAVLTRYVTDALAERCGTAIYVSGAPGTGKTCTLQQVEDAV 348
            PAA L+R+SAAVAALN+Q+ PEA+PQRA QLAVLTR VTDALAERC  A+YV GAPGTGKTC LQQ++  +
Sbjct: 1526 PAAMLRRVSAAVAALNHQNCPEAVPQRAQQLAVLTRNVTDALAERCCPAVYVCGAPGTGKTCALQQLDTEI 1596
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BLAST of jgi.p|Trimin1|171473 vs. uniprot
Match: A0A7L4D207_9AVES (CDC6 protein (Fragment) n=1 Tax=Eurystomus gularis TaxID=325343 RepID=A0A7L4D207_9AVES)

HSP 1 Score: 94.7 bits (234), Expect = 3.390e-18
Identity = 80/274 (29.20%), Postives = 130/274 (47.45%), Query Frame = 1 
Query:  196 PEAIPQRAAQLAVLTRYVTDALAERCGTAIYVSGAPGTGKTCTLQQVEDAVRVWRGEGSXXXXXXXXXARPAFVHVDAAFQTSAKEVFQRILEKIPGNVQRSLRAGRGGSGGSSSGDARAQLEAMLAPPDNGSGXXXXXXXXAAKTMLVLTIEEVNYLRGRGDAVLQALFGWACAPNSRLVLIGVANNINLTET--ADIGV-PSDAVTSVLFPTYTAVQLEEILTARAGGV-----FDPRAAALCAKRVAVRSGDARDALQLAQGAVIVVRKRI 993
            P+ +  R  ++ ++ +++ + +  R   ++Y+SGAPGTGKT  L +V                     AR   + V+    +S + VF  + +++             G   ++S D+  +LE  L                A   +++L ++E++ L  +G  VL  LF W   PNSRLVL+G+AN ++LT+   A +G  P+ +   + FP YT  QL  ILT R G V      D  A   CA++V+  SGDAR AL + + AV VV   +
Sbjct:   16 PDRLHAREKEMGIIRQFLQEHVCGRRPGSLYISGAPGTGKTACLSRV-------------LLDCKDELARSKTIMVNCMSLSSPQSVFPAVAQEL-------------GLPSATSRDSVRRLEKQLT---------------AQGPVVLLVLDELDQLESKGQDVLYTLFEWPRLPNSRLVLVGLANALDLTDRGLARLGARPAGSPQLLHFPPYTREQLTAILTDRLGQVDGDPVLDAAALQFCARKVSAVSGDARKALDICRRAVEVVELEV 248
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BLAST of jgi.p|Trimin1|171473 vs. uniprot
Match: A0A1V9XYI1_9ACAR (Origin recognition complex subunit 1 n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XYI1_9ACAR)

HSP 1 Score: 98.2 bits (243), Expect = 6.310e-18
Identity = 79/268 (29.48%), Postives = 131/268 (48.88%), Query Frame = 1 
Query:  196 PEAIPQRAAQLAVLTRYVTDALAERCGTAIYVSGAPGTGKTCTLQQVEDAVRVWRGEGSXXXXXXXXXARPAFVHVDAAFQTSAKEVFQRILEKIPGNVQRSLRAGRGGSGGSSSGDARAQLEAMLAPPDNGSGXXXXXXXXAAKTMLVLTIEEVNYLRGRGDAVLQALFGWACAPNSRLVLIGVANNINLTETADIGVPSD--AVTSVLFPTYTAVQLEEILTARAGG--VFDPRAAALCAKRVAVRSGDARDALQLAQGAVIVVRK 987
            PE +  R  Q A +  ++ + L+E  G  +Y+SGAPGTGK+ T+++V +A+   +             A+  ++ ++    T   + + RIL+++ G      RA           D   ++        NG+             M+VL  +E++ L  R   VL  LF W   P+SRLV+I +AN ++L E   I   +    ++ + F  YT  +L+EIL AR  G  + DP A  L +++VA  SGDAR AL+L + +V ++ K
Sbjct:  119 PEQLSCRETQFAEIYDFIENRLSEETGGCMYISGAPGTGKSATIREVMEALNKAQKTNEV--------AKFKYIEINGMKLTKPHQAYVRILKQLTGRTATPERAA----------DILTKIFTGKEEATNGA-------------MVVLLADELDLLWTRKQQVLYNLFDWPTHPSSRLVVIAIANTMDLPERVFINKVTSRMGLSRITFQPYTFQELQEILNARLVGHELMDPDAIELVSRKVAALSGDARRALELCRRSVELLGK 355
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BLAST of jgi.p|Trimin1|171473 vs. uniprot
Match: A9RUZ9_PHYPA (Cdc6_C domain-containing protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RUZ9_PHYPA)

HSP 1 Score: 94.4 bits (233), Expect = 3.200e-17
Identity = 80/295 (27.12%), Postives = 134/295 (45.42%), Query Frame = 1 
Query:  175 ALNYQHFPEAIPQRAAQLAVLTRYVTDALAERCGTAIYVSGAPGTGKTCTLQQVEDAVRVWRGEGSXXXXXXXXXARPAFVHVDAAFQTSAKEVFQRILEKIP-----GNVQRSLRAGRGGSGGSSSGDARAQLEAMLAPPDNGSGXXXXXXXXAAKTMLVLTIEEVNYLRGRGDAVLQALFGWACAPNSRLVLIGVANNINLTET-----ADIGVPSDAVTSVLFPTYTAVQLEEILTARAGGV----FDPRAAALCAKRVAVRSGDARDALQLAQGAVIVVRKRIEAALASGG 1017
            AL+    P ++  R  + A +  +   ++ ++   +IYV G PGTGK+ T++QV+     W  E +         + P  V V+    T  + ++Q++L+ +       +V +S                  +L   +      SG        + + ML+L ++E++YL  R   VL  LF     PNS  +LIG+AN I+LT+        +    D +T   +P YT  Q+  +LT R  GV    F   +  LCA++VA  SGD R AL + + A+ ++   + A L  GG
Sbjct:    5 ALHLSAIPSSVLCRDVEQAKVIEFCKSSIVQQVPGSIYVCGCPGTGKSLTMEQVKLLSVSWAAEANL--------SPPDIVSVNCTTLTDPRNIYQKVLQSLKQKEASDDVVKSWSL------------CLKELRQRVCDTSRKSGG-------SPRHMLLLIVDEMDYLITRNQEVLYDLFQLPTYPNSCCILIGIANAIDLTDRFLPKLRSLNCRPDVIT---YPAYTKDQISTVLTQRLKGVPFTVFQTASVELCARKVAAASGDMRKALHVCRSALDILETEVRAELDKGG 269
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BLAST of jgi.p|Trimin1|171473 vs. uniprot
Match: A0A7S2QNY7_9DINO (Origin recognition complex subunit 1 (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QNY7_9DINO)

HSP 1 Score: 93.6 bits (231), Expect = 4.190e-17
Identity = 85/254 (33.46%), Postives = 117/254 (46.06%), Query Frame = 1 
Query:  283 IYVSGAPGTGKTCTLQQVEDAVRVWRGEGSXXXXXXXXXARP-AFVHVDAAFQTSAKEVFQRILEKIPGNVQRSLRAGRGGSGGSSSGDARAQLEAMLAPPDNGSGXXXXXXXXAAKTMLVLTIEEVNYLRGRGDAVLQALFGWACAPNSRLVLIGVANNINLTETADIGVPSD-AVTSVLFPTYTAVQLEEILTAR-----AGGVFDPRAAALCAKRVAVRSGDARDALQLAQGAVIVVRKRIEAALASGGSG 1023
            +YVSG PGTGKT +   V +AVR    E            RP AFVH++A   ++   VF  I  K+P     + RAGR  S         AQ  A L+                 + ++VL ++EV+ L  +   VL  +F W   P +RLV++ +AN ++L E     V S   V  V F  Y+  QL  IL  R     A   F   A  LCA R++  SGDAR ALQ+ +  V    +R+E + AS   G
Sbjct:   25 LYVSGMPGTGKTAS---VLEAVRSLNAE-------RRSLRRPFAFVHINAMCLSTPGAVFSEICRKVPAAAAHAGRAGRSMS--------EAQAHACLSSFFTCGAGVGPAAGNKDEAVVVLLLDEVDCLVTQTQTVLYRIFDWLSQPGARLVVMAIANTMDLPERLLPRVTSRLGVRRVNFTPYSRAQLRAILADRLRRFGAAAAFSEDALTLCAARISAASGDARKALQVCRRVVEARLRRLEGSEASQADG 260
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BLAST of jgi.p|Trimin1|171473 vs. uniprot
Match: A0A2K1L1G3_PHYPA (Cell division control protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L1G3_PHYPA)

HSP 1 Score: 94.4 bits (233), Expect = 9.100e-17
Identity = 80/295 (27.12%), Postives = 134/295 (45.42%), Query Frame = 1 
Query:  175 ALNYQHFPEAIPQRAAQLAVLTRYVTDALAERCGTAIYVSGAPGTGKTCTLQQVEDAVRVWRGEGSXXXXXXXXXARPAFVHVDAAFQTSAKEVFQRILEKIP-----GNVQRSLRAGRGGSGGSSSGDARAQLEAMLAPPDNGSGXXXXXXXXAAKTMLVLTIEEVNYLRGRGDAVLQALFGWACAPNSRLVLIGVANNINLTET-----ADIGVPSDAVTSVLFPTYTAVQLEEILTARAGGV----FDPRAAALCAKRVAVRSGDARDALQLAQGAVIVVRKRIEAALASGG 1017
            AL+    P ++  R  + A +  +   ++ ++   +IYV G PGTGK+ T++QV+     W  E +         + P  V V+    T  + ++Q++L+ +       +V +S                  +L   +      SG        + + ML+L ++E++YL  R   VL  LF     PNS  +LIG+AN I+LT+        +    D +T   +P YT  Q+  +LT R  GV    F   +  LCA++VA  SGD R AL + + A+ ++   + A L  GG
Sbjct:  208 ALHLSAIPSSVLCRDVEQAKVIEFCKSSIVQQVPGSIYVCGCPGTGKSLTMEQVKLLSVSWAAEANL--------SPPDIVSVNCTTLTDPRNIYQKVLQSLKQKEASDDVVKSWSL------------CLKELRQRVCDTSRKSGG-------SPRHMLLLIVDEMDYLITRNQEVLYDLFQLPTYPNSCCILIGIANAIDLTDRFLPKLRSLNCRPDVIT---YPAYTKDQISTVLTQRLKGVPFTVFQTASVELCARKVAAASGDMRKALHVCRSALDILETEVRAELDKGG 472
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|171473 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YIZ8_9STRA5.560e-307100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YJC9_9STRA9.150e-17691.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z562_9STRA4.470e-14866.75AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835ZET1_9STRA6.090e-4675.89Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CKC2_9STRA5.580e-1973.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7L4D207_9AVES3.390e-1829.20CDC6 protein (Fragment) n=1 Tax=Eurystomus gularis... [more]
A0A1V9XYI1_9ACAR6.310e-1829.48Origin recognition complex subunit 1 n=1 Tax=Tropi... [more]
A9RUZ9_PHYPA3.200e-1727.12Cdc6_C domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S2QNY7_9DINO4.190e-1733.46Origin recognition complex subunit 1 (Fragment) n=... [more]
A0A2K1L1G3_PHYPA9.100e-1727.12Cell division control protein n=3 Tax=Physcomitriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_82contigContig_82:557666..559219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|171473|e_gw1.82.17.1
BRITEko00000,ko00001,ko00002,ko03032,ko03036
KEGG ModuleM00284
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG koko:K02213,ko:K02603,ko:K02606
GOsGO:0000075,GO:0000076,GO:0000079,GO:0000082,GO:0000083,GO:0000166,GO:0000228,GO:0000278,GO:0000793,GO:0000794,GO:0000922,GO:0001932,GO:0001934,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006275,GO:0006355,GO:0006725,GO:0006807,GO:0007049,GO:0007088,GO:0007089,GO:0007346,GO:0008150,GO:0008152,GO:0008156,GO:0008284,GO:0008285,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010965,GO:0015630,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0019900,GO:0022402,GO:0030071,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031401,GO:0031570,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032465,GO:0032467,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033674,GO:0034641,GO:0034645,GO:0036094,GO:0042127,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045737,GO:0045786,GO:0045787,GO:0045859,GO:0045860,GO:0045931,GO:0045934,GO:0045937,GO:0046483,GO:0048145,GO:0048146,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051053,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051233,GO:0051246,GO:0051247,GO:0051252,GO:0051302,GO:0051338,GO:0051347,GO:0051726,GO:0051781,GO:0051783,GO:0051983,GO:0051984,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0090068,GO:0090304,GO:0097159,GO:1900087,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902806,GO:1902808,GO:1903047,GO:1903506,GO:1904029,GO:1904031,GO:1905818,GO:2000045,GO:2000112,GO:2000113,GO:2001141
Preferred nameCDC6
DescriptionDNA replication initiation
COG categoryLO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1474@1|root,KOG2227@2759|Eukaryota
Evalue1.29e-20
Seed ortholog2880.D7FJK0
Hectar predicted targeting categoryother localisation
TranscriptId171795
TrackFilteredModels1
ProteinId171473
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171473gene_10993Tribonema minus UTEX_B_3156 geneContig_82 557666..559219 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10993_1exon_10993_1Tribonema minus UTEX_B_3156 exonContig_82 557666..558050 +
exon_10993_2exon_10993_2Tribonema minus UTEX_B_3156 exonContig_82 558084..559219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10993CDS_10993Tribonema minus UTEX_B_3156 CDSContig_82 557666..558050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171473Trimin1|171473|e_gw1.82.17.1Tribonema minus UTEX_B_3156 polypeptideContig_82 557666..559219 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10993 ID=mRNA_10993|Name=jgi.p|Trimin1|171473|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1521bp|location=Sequence derived from alignment at Contig_82:557666..559219+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCAGGCGGCGCTGTCGTCTCGCGATGAGAACGCGCCGCCAGGCGT
TAACCAGCGTGCTGCGGCGACGGTGGCGGTGGCGGCGGCGGTGGTGGCAG
CAGCGGCGGCGCCGCCGCCGCCCGAGGACGTCAGCCCCGCGGCCGCGCTG
CAGCGCCTGAGCGCTGCTGTGGCGGCGCTCAACTACCAGCACTTCCCCGA
GGCGATCCCGCAGCGCGCGGCGCAGCTGGCGGTCCTGACGCGCTACGTGA
CGGACGCCCTTGCTGAGCGCTGCGGCACAGCAATTTATGTGAGCGGCGCG
CCGGGGACGGGCAAGACGTGCACGCTGCAACAAGTGGAGGATGCGGTGCG
TGTGTGGCGCGGCGAAGGCAGCGGCAGCAGCGCCGCAGCAGCGGCAGCAG
CGCGTCCCGCGTTTGTCCACGTGGACGCCGCATTCCAGACATCGGCGAAG
GAGGTGTTCCAGCGCATTCTTGAGAAGATTCCCGGGAACGTGCAGCGCAG
CCTCCGAGCAGGGCGCGGCGGCAGCGGCGGCAGCAGCAGCGGCGATGCGC
GTGCGCAGCTGGAGGCCATGCTTGCGCCCCCGGACAATGGCAGTGGCAGC
AGCAGCGGCGGCGCTGGCGGCGCAGCGAAGACGATGCTTGTGCTGACGAT
CGAGGAGGTCAACTACCTGCGAGGCCGCGGCGATGCCGTGCTGCAGGCGC
TGTTCGGCTGGGCATGCGCACCCAACTCTCGCCTCGTTCTTATCGGCGTC
GCCAACAACATCAACCTGACGGAGACGGCGGATATTGGCGTCCCGAGCGA
CGCCGTGACGAGCGTGCTGTTCCCCACGTATACGGCTGTGCAGCTCGAGG
AGATACTGACGGCGCGCGCCGGCGGCGTTTTCGACCCACGCGCCGCTGCG
CTGTGCGCCAAGAGGGTGGCGGTGCGCAGCGGCGATGCGCGCGACGCGCT
GCAGCTGGCGCAGGGCGCTGTCATTGTCGTTCGAAAGCGGATCGAGGCAG
CTCTCGCCAGCGGCGGCAGCGGCAACGGCAGCGGCAGCAACGGCGGCGGC
AGCCAAGTCAGCAGCAACGTTGCAGCGACGGCGGCCGGCCTGGTTACCAC
ACGCGACGTTTCCGCAGCAGCCGCCGCCATTGACGGCGCTAGCGGCCGCA
GCACGATGGGCGAGCTCGCGCCCGCGCAGAAGATGCTGCTCTGCGTCATC
GCGGCGCTGCGCGCGGAGCGCTGCGGCGACACGCCCGAGGTGGCAGCGAT
CATGCAGCGCCACGCCGGCGCCATGCTTGACGCCGGCTTCGGCACGTACC
AGCAGGGCTTTCAGTATGCGCTCGATGCCCTCGCTGATGGCAATCTCGTG
GAGGTGCAGGGCGGGGGTATCGACCGCCGCGACGGGGGCGAGAAACCCCG
CTTCGTCAAGTTGAACGTCAGCGACGACGACCTACGCGCGGTGTTCACAG
AGAACGTCTTCAAGAAGGTGCTGCCGCGCGCGGGCGGCGGCGGCCGCGGC
GGCGGCAGCGCGTGCCGCTGA
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protein sequence of jgi.p|Trimin1|171473

>Trimin1|171473|e_gw1.82.17.1 ID=Trimin1|171473|e_gw1.82.17.1|Name=jgi.p|Trimin1|171473|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=507bp
MLQAALSSRDENAPPGVNQRAAATVAVAAAVVAAAAAPPPPEDVSPAAAL
QRLSAAVAALNYQHFPEAIPQRAAQLAVLTRYVTDALAERCGTAIYVSGA
PGTGKTCTLQQVEDAVRVWRGEGSGSSAAAAAAARPAFVHVDAAFQTSAK
EVFQRILEKIPGNVQRSLRAGRGGSGGSSSGDARAQLEAMLAPPDNGSGS
SSGGAGGAAKTMLVLTIEEVNYLRGRGDAVLQALFGWACAPNSRLVLIGV
ANNINLTETADIGVPSDAVTSVLFPTYTAVQLEEILTARAGGVFDPRAAA
LCAKRVAVRSGDARDALQLAQGAVIVVRKRIEAALASGGSGNGSGSNGGG
SQVSSNVAATAAGLVTTRDVSAAAAAIDGASGRSTMGELAPAQKMLLCVI
AALRAERCGDTPEVAAIMQRHAGAMLDAGFGTYQQGFQYALDALADGNLV
EVQGGGIDRRDGGEKPRFVKLNVSDDDLRAVFTENVFKKVLPRAGGGGRG
GGSACR*
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mRNA from alignment at Contig_82:557666..559219+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10993 ID=mRNA_10993|Name=jgi.p|Trimin1|171473|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1554bp|location=Sequence derived from alignment at Contig_82:557666..559219+ (Tribonema minus UTEX_B_3156 )
ATGCTGCAGGCGGCGCTGTCGTCTCGCGATGAGAACGCGCCGCCAGGCGT
TAACCAGCGTGCTGCGGCGACGGTGGCGGTGGCGGCGGCGGTGGTGGCAG
CAGCGGCGGCGCCGCCGCCGCCCGAGGACGTCAGCCCCGCGGCCGCGCTG
CAGCGCCTGAGCGCTGCTGTGGCGGCGCTCAACTACCAGCACTTCCCCGA
GGCGATCCCGCAGCGCGCGGCGCAGCTGGCGGTCCTGACGCGCTACGTGA
CGGACGCCCTTGCTGAGCGCTGCGGCACAGCAATTTATGTGAGCGGCGCG
CCGGGGACGGGCAAGACGTGCACGCTGCAACAAGTGGAGGATGCGGTGCG
TGTGTGGCGCGGCGAAGGCAGCGGCAGCAGCGCCGGTGCCGCTGCCGCCG
CCGCCGCAGCACCAGCAGCAGCAGCGGCAGCAGCGCGTCCCGCGTTTGTC
CACGTGGACGCCGCATTCCAGACATCGGCGAAGGAGGTGTTCCAGCGCAT
TCTTGAGAAGATTCCCGGGAACGTGCAGCGCAGCCTCCGAGCAGGGCGCG
GCGGCAGCGGCGGCAGCAGCAGCGGCGATGCGCGTGCGCAGCTGGAGGCC
ATGCTTGCGCCCCCGGACAATGGCAGTGGCAGCAGCAGCGGCGGCGCTGG
CGGCGCAGCGAAGACGATGCTTGTGCTGACGATCGAGGAGGTCAACTACC
TGCGAGGCCGCGGCGATGCCGTGCTGCAGGCGCTGTTCGGCTGGGCATGC
GCACCCAACTCTCGCCTCGTTCTTATCGGCGTCGCCAACAACATCAACCT
GACGGAGACGGCGGATATTGGCGTCCCGAGCGACGCCGTGACGAGCGTGC
TGTTCCCCACGTATACGGCTGTGCAGCTCGAGGAGATACTGACGGCGCGC
GCCGGCGGCGTTTTCGACCCACGCGCCGCTGCGCTGTGCGCCAAGAGGGT
GGCGGTGCGCAGCGGCGATGCGCGCGACGCGCTGCAGCTGGCGCAGGGCG
CTGTCATTGTCGTTCGAAAGCGGATCGAGGCAGCTCTCGCCAGCGGCGGC
AGCGGCAACGGCAGCGGCAGCAACGGCGGCGGCAGCCAAGTCAGCAGCAA
CGTTGCAGCGACGGCGGCCGGCCTGGTTACCACACGCGACGTTTCCGCAG
CAGCCGCCGCCATTGACGGCGCTAGCGGCCGCAGCACGATGGGCGAGCTC
GCGCCCGCGCAGAAGATGCTGCTCTGCGTCATCGCGGCGCTGCGCGCGGA
GCGCTGCGGCGACACGCCCGAGGTGGCAGCGATCATGCAGCGCCACGCCG
GCGCCATGCTTGACGCCGGCTTCGGCACGTACCAGCAGGGCTTTCAGTAT
GCGCTCGATGCCCTCGCTGATGGCAATCTCGTGGAGGTGCAGGGCGGGGG
TATCGACCGCCGCGACGGGGGCGAGAAACCCCGCTTCGTCAAGTTGAACG
TCAGCGACGACGACCTACGCGCGGTGTTCACAGAGAACGTCTTCAAGAAG
GTGCTGCCGCGCGCGGGCGGCGGCGGCCGCGGCGGCGGCAGCGCGTGCCG
CTGA
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Coding sequence (CDS) from alignment at Contig_82:557666..559219+

>mRNA_10993 ID=mRNA_10993|Name=jgi.p|Trimin1|171473|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1521bp|location=Sequence derived from alignment at Contig_82:557666..559219+ (Tribonema minus UTEX_B_3156 )
ATGCTGCAGGCGGCGCTGTCGTCTCGCGATGAGAACGCGCCGCCAGGCGT
TAACCAGCGTGCTGCGGCGACGGTGGCGGTGGCGGCGGCGGTGGTGGCAG
CAGCGGCGGCGCCGCCGCCGCCCGAGGACGTCAGCCCCGCGGCCGCGCTG
CAGCGCCTGAGCGCTGCTGTGGCGGCGCTCAACTACCAGCACTTCCCCGA
GGCGATCCCGCAGCGCGCGGCGCAGCTGGCGGTCCTGACGCGCTACGTGA
CGGACGCCCTTGCTGAGCGCTGCGGCACAGCAATTTATGTGAGCGGCGCG
CCGGGGACGGGCAAGACGTGCACGCTGCAACAAGTGGAGGATGCGGTGCG
TGTGTGGCGCGGCGAAGGCAGCGGCAGCAGCGCCGCAGCAGCGGCAGCAG
CGCGTCCCGCGTTTGTCCACGTGGACGCCGCATTCCAGACATCGGCGAAG
GAGGTGTTCCAGCGCATTCTTGAGAAGATTCCCGGGAACGTGCAGCGCAG
CCTCCGAGCAGGGCGCGGCGGCAGCGGCGGCAGCAGCAGCGGCGATGCGC
GTGCGCAGCTGGAGGCCATGCTTGCGCCCCCGGACAATGGCAGTGGCAGC
AGCAGCGGCGGCGCTGGCGGCGCAGCGAAGACGATGCTTGTGCTGACGAT
CGAGGAGGTCAACTACCTGCGAGGCCGCGGCGATGCCGTGCTGCAGGCGC
TGTTCGGCTGGGCATGCGCACCCAACTCTCGCCTCGTTCTTATCGGCGTC
GCCAACAACATCAACCTGACGGAGACGGCGGATATTGGCGTCCCGAGCGA
CGCCGTGACGAGCGTGCTGTTCCCCACGTATACGGCTGTGCAGCTCGAGG
AGATACTGACGGCGCGCGCCGGCGGCGTTTTCGACCCACGCGCCGCTGCG
CTGTGCGCCAAGAGGGTGGCGGTGCGCAGCGGCGATGCGCGCGACGCGCT
GCAGCTGGCGCAGGGCGCTGTCATTGTCGTTCGAAAGCGGATCGAGGCAG
CTCTCGCCAGCGGCGGCAGCGGCAACGGCAGCGGCAGCAACGGCGGCGGC
AGCCAAGTCAGCAGCAACGTTGCAGCGACGGCGGCCGGCCTGGTTACCAC
ACGCGACGTTTCCGCAGCAGCCGCCGCCATTGACGGCGCTAGCGGCCGCA
GCACGATGGGCGAGCTCGCGCCCGCGCAGAAGATGCTGCTCTGCGTCATC
GCGGCGCTGCGCGCGGAGCGCTGCGGCGACACGCCCGAGGTGGCAGCGAT
CATGCAGCGCCACGCCGGCGCCATGCTTGACGCCGGCTTCGGCACGTACC
AGCAGGGCTTTCAGTATGCGCTCGATGCCCTCGCTGATGGCAATCTCGTG
GAGGTGCAGGGCGGGGGTATCGACCGCCGCGACGGGGGCGAGAAACCCCG
CTTCGTCAAGTTGAACGTCAGCGACGACGACCTACGCGCGGTGTTCACAG
AGAACGTCTTCAAGAAGGTGCTGCCGCGCGCGGGCGGCGGCGGCCGCGGC
GGCGGCAGCGCGTGCCGCTGA
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