mRNA_11719 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|92763 vs. uniprot
Match: A0A835YJA2_9STRA (Galectin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJA2_9STRA) HSP 1 Score: 667 bits (1721), Expect = 5.410e-242 Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 1
Query: 52 MLQEKREAQQAAAARASSFGAPAPKRAKFVTVAGKTVSTEINKDAFPVSGLVWNQDWDPTQETARLVVPLTDFALDQKQTLVLRMTVPDSSDKWGISLCPRDHADFKNVLYHFNPRSKERGGILVQNSRRDGQWEHAVTDRLNEFPAMFGLTFDTAIQIDTWGFHVTLAGDYQLSFKHRRPIEEWQQDGQLVLEVPRTDDYGNPQSLKLHQIWWGKKKYHPNQPTAEELEADHSGIGGGEYETEFRNLHISNIAHSDDPAEEALIRQELEDLFAKYDVEAVKVISGRGYGFINFKSAEGAAQALQETNGTRVHGQDIKVTKARSRG 1029
MLQEKREAQQAAAARASSFGAPAPKRAKFVTVAGKTVSTEINKDAFPVSGLVWNQDWDPTQETARLVVPLTDFALDQKQTLVLRMTVPDSSDKWGISLCPRDHADFKNVLYHFNPRSKERGGILVQNSRRDGQWEHAVTDRLNEFPAMFGLTFDTAIQIDTWGFHVTLAGDYQLSFKHRRPIEEWQQDGQLVLEVPRTDDYGNPQSLKLHQIWWGKKKYHPNQPTAEELEADHSGIGGGEYETEFRNLHISNIAHSDDPAEEALIRQELEDLFAKYDVEAVKVISGRGYGFINFKSAEGAAQALQETNGTRVHGQDIKVTKARSRG
Sbjct: 1 MLQEKREAQQAAAARASSFGAPAPKRAKFVTVAGKTVSTEINKDAFPVSGLVWNQDWDPTQETARLVVPLTDFALDQKQTLVLRMTVPDSSDKWGISLCPRDHADFKNVLYHFNPRSKERGGILVQNSRRDGQWEHAVTDRLNEFPAMFGLTFDTAIQIDTWGFHVTLAGDYQLSFKHRRPIEEWQQDGQLVLEVPRTDDYGNPQSLKLHQIWWGKKKYHPNQPTAEELEADHSGIGGGEYETEFRNLHISNIAHSDDPAEEALIRQELEDLFAKYDVEAVKVISGRGYGFINFKSAEGAAQALQETNGTRVHGQDIKVTKARSRG 326
BLAST of jgi.p|Trimin1|92763 vs. uniprot
Match: D7FJF5_ECTSI (Galectin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJF5_ECTSI) HSP 1 Score: 164 bits (416), Expect = 7.900e-43 Identity = 112/377 (29.71%), Postives = 180/377 (47.75%), Query Frame = 1
Query: 16 PKPLSANEKIRLMLQEKREAQQAAAARASSFGAPAPKRAKFVTVAGKTVST-EINKDAFPVSGLVWNQDWDPTQETAR-----------LVVPLTDFALDQK-------------QTLVLRMTVPDSSDKWGISLCPRDHADFKNVLYHFNPRSKERGGILVQNSRRDGQW----EHAVTDRLNEFPAMFGLTFDTAIQIDTWGFHVTLAGDYQLSFKHRRPIEEWQQDGQLVLEVPRTDDYGNPQSLKLHQIWWGKKKY---------HPNQPTAEELEADHSGIGGGEYETEFRNLHISNIAHSDDPAEEALIRQELEDLFAKYDVEAVKVI--SGRGYGFINFKSAEGAAQALQETNGTRVHGQDIKVTKARSR 1026
P P A + +++L++KR+A + ASS A ++AK G S ++ +P SGL+ ++ E + LV L +F + +TLV+R T+P S W I++CP+DH DF+ +L+HFNPR + + N+R W +H ++ R +P +F ++ + A+QID GFHV + G Y +F HR + ++ LVL+V DDY L +H+IWWG K PN+ TAE +S F +LH + + E +R+ L D+F Y V+V + +GFI F+ AA+AL+E G VHG+ ++++KA +R
Sbjct: 139 PAPTDAVSRAKMILEKKRKAAARFGSGASSGAAGVLRKAKITKATGTPSSNPRLDPIKYPASGLLLRDEYRTFAEIEKDGERVYEPLDPLVRLLKNFGIADSNSGADGVAKKQFHETLVMRATIPAHSTSWAINICPKDHKDFEEILFHFNPRRR----FVAMNNREGNIWGQQEKHMLSTR---WPEVFNVSINVAVQIDAAGFHVAVDGKYCATFAHRTKVPPSGEE--LVLQVMTRDDYDTNLRLVVHEIWWGHKDTMPGLPGRDKEPNRRTAENWRGSNSNDA-------FVDLHAAGLPPMPTSDLEESVRKRLIDMFQPYGAIQVRVFHRESKNFGFIKFREHNDAAKALEELGGAEVHGKPMRLSKAAAR 499
BLAST of jgi.p|Trimin1|92763 vs. uniprot
Match: A0A6H5JWU1_9PHAE (Galectin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU1_9PHAE) HSP 1 Score: 156 bits (395), Expect = 2.010e-41 Identity = 87/262 (33.21%), Postives = 138/262 (52.67%), Query Frame = 1
Query: 286 QTLVLRMTVPDSSDKWGISLCPRDHADFKNVLYHFNPRSKERGGILVQNSRRDGQW----EHAVTDRLNEFPAMFGLTFDTAIQIDTWGFHVTLAGDYQLSFKHRRPIEEWQQDGQLVLEVPRTDDYGNPQSLKLHQIWWGKKKY---------HPNQPTAEELEADHSGIGGGEYETEFRNLHISNIAHSDDPAEEALIRQELEDLFAKYDVEAVKVI--SGRGYGFINFKSAEGAAQALQETNGTRVHGQDIKVTKARSR 1026
+TLV+R T+P S W I++CP+DH +F+ +L+HFNPR + + N+R W +H ++ R +P +F ++ + A+QID GFHV + G Y +F HR + D +LVL+V DDY L +H+IWWG K PN+ TAE +S F +LH + + + + +R+ L D+F Y V+V + +GFI F+ AA+AL+E G VHG+ ++++KA +R
Sbjct: 71 ETLVMRATIPAHSTSWAINICPKDHKNFEEILFHFNPRRR----FVAMNNREGNIWGQQEKHMLSTR---WPEVFNVSINLAVQIDAAGFHVAVDGKYCATFAHRTKVPP--NDEELVLQVMTRDDYDTNLPLVVHEIWWGHKDTMPGLPGRDKEPNRRTAENWRGSNSNDA-------FVDLHAAGLPPMPNSDLQESVRKRLVDMFQPYGAIQVRVFHRESKNFGFIKFREHNDAAKALEELGGAEVHGKPMRLSKAAAR 316
BLAST of jgi.p|Trimin1|92763 vs. uniprot
Match: A0A7S2WNY8_9STRA (Galectin (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WNY8_9STRA) HSP 1 Score: 119 bits (297), Expect = 9.030e-27 Identity = 67/199 (33.67%), Postives = 104/199 (52.26%), Query Frame = 1
Query: 205 VWNQDWDPTQETAR-----LVVPLTDFALDQ------KQTLVLRMTVPDSSDKWGISLCPRDHADFKNVLYHFNPRSKERGGILVQNSRRDGQWEHAVTDRLNEFPAMFGLTFDTA-IQIDTWGFHVTLAGDYQLSFKHRRPIEEWQQDGQLVLEVPRTDDYGNPQSLKLHQIWWGKKKYHPNQPTAEELEADHSGIGG 765
V +W P R L V L DF Q K TL ++ T P S ++ I++ +H ++ +VL+HFNPR +++GG LV N ++DG W + L++ P +FG T T IQI+ GF + + G + +HR + + L+L+ P TDDYG P++ ++++WWG K PN T D SG+ G
Sbjct: 175 VHEPEWSPPFSALRPDEGCLEVSLPDFDSSQATVGKGKNTLAIKFTAPLDSKRFSINIAAPNHNNYDSVLFHFNPRQRQKGGQLVINDKKDGIWGQGINVPLSQVPLIFGQTSSTLLIQINGEGFDIFIEGKHCARLEHRTELPA--KKCPLILQFPSTDDYGKPENWIVYKVWWGHK---PNMATT----GDVSGVAG 364
BLAST of jgi.p|Trimin1|92763 vs. uniprot
Match: A0A8J2SPR1_9STRA (Galectin n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPR1_9STRA) HSP 1 Score: 115 bits (288), Expect = 6.950e-25 Identity = 64/186 (34.41%), Postives = 97/186 (52.15%), Query Frame = 1
Query: 154 KTVSTEINKDAFPVSGLVWNQDWDPTQETARLVVPLTDFALDQKQTLVLRMTVPDSSDKWGISLCPRDHADFKNVLYHFNPRSKERGGILVQNSRRDGQWEHAVTDRLNEFPAMFGLT-FDTAIQIDTWG----FHVTLAGDYQLSFKHRRPIEEWQQDGQLVLEVPRTDDYGNPQSLKLHQIWWG 696
+ V+ I +A P ++++ L VPL +F + TL+L ++V D W ++LCP DH D +LYHFNPR +ERGG LV+N + + W AV +L PA+FGL + A+++ HVT+ +++ R + E G L L VP DD+GN Q + +H WWG
Sbjct: 316 RDVAKLIKSEALPFDAATSDEEY--------LEVPLPNFP--ENDTLILHVSVAADVDIWAMNLCPGDHDDGATILYHFNPRRRERGGRLVENDKNEDDWGRAVKTQLPPKPALFGLAKAEVALRVVRRAGHVDVHVTVNRQQATAWRLRTEVSE----GALALLVPTRDDFGNRQGVVVHDAWWG 487
BLAST of jgi.p|Trimin1|92763 vs. uniprot
Match: A0A7S4AMI0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AMI0_9STRA) HSP 1 Score: 112 bits (281), Expect = 9.140e-24 Identity = 83/285 (29.12%), Postives = 137/285 (48.07%), Query Frame = 1
Query: 220 WDPTQETAR------LVVPLTDFALDQKQ------TLVLRMTVPDSSDKWGISLCPRDHADFKNVLYHFNPRSKERGGILVQNSRRDGQWEHAVTDRLNEFPAMFGLTFDTA-IQIDTWGFHVTLAGDYQLSFKHRRPIEEWQQDGQLVLEVPRTDDYGNPQSLKLHQIWWGKKKYHPNQPTAEELEADHSGIGGGE-YETEF-RNLHISNIAHSDDPAEEALIRQELEDLFAKYD-VEAVKVISGRG--YGFINFKSAEGAAQALQETNGTRVHGQDIKVTKAR 1020
W P R +V L DF + + TL L+ P S ++ ++ +H DF ++L+HFNPR +++GG LV N ++ G W AV L++ P MFG T IQI+ GF V + G + +HR +E + +L L+ P DDY + ++ +++ WWG K +P A+E D SG+ G + Y++ + + +S + + L ELE +F KY V + + Y F+ F++ A+Q+ GT K+ +AR
Sbjct: 287 WSPPDYRPRDPNDGAFMVALEDFDITKANNGEGPNTLALKFHAPSDSKRFSFNIAGPNHNDFDSILFHFNPRQRQKGGQLVVNDKQKGTWGRAVQLPLSQVPLMFGQPSMTLMIQINGDGFDVFVEGKHVARLEHR--VELPSRPCKLYLQFPSCDDYRSTENWTVYRTWWGNK-----EPMAKE---DISGVAGVDAYDSVHPKKIFVSGLRKIRTDQQVELRTAELERVFRKYGGARGVSCLVPKNSTYAFVEFETEHMCDVAIQQMPGTSF---PYKINRAR 558
BLAST of jgi.p|Trimin1|92763 vs. uniprot
Match: A0A7S2E642_9STRA (Galectin n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E642_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.180e-23 Identity = 72/234 (30.77%), Postives = 119/234 (50.85%), Query Frame = 1
Query: 289 TLVLRMTVPDSSDKWGISLCPRDHADFKNVLYHFNPRSKERGGILVQNSRRDGQWEHAVTDRLNEFPAMFGLTFDTAI-QIDTWGFHVTLAGDYQLSFKHRRPIEEWQQDGQLVLEVPRTDDYGNPQSLKLHQIWWGKKKYHPNQPTAEELEA-DHSGIGG-GEYETEF-RNLHISNIAHSDDPAEEALIRQELEDLFAKYDVEA---VKVISGRGYGFINFKSAEGAAQALQE 969
TL ++ +VP S ++ ++ +H D+ NVL+HFNPR +++GG LV N +++G W + L++ P +FG T I QI F V + + HR + ++ L +VP TDDYG+ ++ ++++WWG+K +L+A D G+ G +Y + + L IS + A+ L R ELE F KY V V + + F+ ++ A ALQE
Sbjct: 111 TLAIKFSVPKESRRFSFNIAGPNHGDYNNVLFHFNPRQRQKGGHLVINDKQEGTWGQGINVPLSQIPVIFGQVSCTLILQITGDCFDVFIGDKHCARLDHRTSLPR--ENCSLHFQVPSTDDYGSLENWIVYRVWWGRK----------DLKAGDLEGVAGVNQYSSVHPKKLFISGLTKIKHEAQVDLRRAELERAFRKYGGALGCKVTVPTNSTFAFVEVETERQADIALQE 332
BLAST of jgi.p|Trimin1|92763 vs. uniprot
Match: A0A7S4K6P9_9STRA (Galectin n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6P9_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.270e-23 Identity = 75/250 (30.00%), Postives = 119/250 (47.60%), Query Frame = 1
Query: 289 TLVLRMTVPDSSDKWGISLCPRDHADFKNVLYHFNPRSKERGGILVQNSRRDGQWEHAVTDRLNEFPAMFGLTFDTAI-QIDTWGFHVTLAGDYQLSFKHRRPIEEWQQDGQLVLEVPRTDDYGNPQSLKLHQIWWGKKKYHPNQPTAEELEADHSGIGGGEYETEF--RNLHISNIAHSDDPAEEALIRQELEDLFAKYD-VEAVKVIS--GRGYGFINFKSAEGAAQALQETNGTRVHGQDIKVTKAR 1020
TL ++ P+ S ++ +++ H D+ ++L+HFNPR +E+GG +V N +++G W AV L++ P +FG T I QI G+ V + + +HR + L L+ P TDDYGNP+ ++++WWG K A D S + G + R L +S ++ E L + ELE F KY V VI+ Y F+ +S A AL+E K+ +AR
Sbjct: 261 TLAVKFMAPEDSRRFSLNIAGPGHRDYHDILFHFNPRQREKGGQVVINDKQEGIWGSAVNVPLSQCPIIFGQPSMTLIIQITGDGYDVFIDNKHCARLEHRTQLPP--NKCPLTLQFPSTDDYGNPEGWLVYKVWWGHK--------AIMATGDLSNVAGVNMFSSIHPRKLFVSGLSKIHSEPEVDLRKAELERAFRKYGGAHGVSVIAPTNSSYAFVEVESERQADLALREMQS------QYKINRAR 494
BLAST of jgi.p|Trimin1|92763 vs. uniprot
Match: A0A448ZRG9_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRG9_9STRA) HSP 1 Score: 108 bits (269), Expect = 3.670e-22 Identity = 83/290 (28.62%), Postives = 130/290 (44.83%), Query Frame = 1
Query: 220 WDPTQETAR------LVVPLTDFALDQKQ------TLVLRMTVPDSSDKWGISLCPRDHADFKNVLYHFNPRSKERGGILVQNSRRDGQWEHAVTDRLNEFPAMFGLTFDTA-IQIDTWGFHVTLAGDYQLSFKHR-----RPIEEWQQDGQLVLEVPRTDDYGNPQSLKLHQIWWGKKKYHPNQPTAEELEADHSGIGGGEY--ETEFRNLHISNIAHSDDPAEEALIRQELEDLFAKYD-VEAVKVISGRG--YGFINFKSAEGAAQALQETNGTRVHGQDIKVTKAR 1020
W P R V L DF + + TL L+ P S ++ ++ +H DF ++L+HFNPR +++GG LV N ++ G W AV L++ P MFG T IQI+ GF V + + +HR RP + W L+ P DD NP++ +++ WWG K +P A+E D SGI G + + L +S + + L ELE +F ++ V + + Y F+ F++ ALQ+ T K+ +AR
Sbjct: 306 WQPPDYRPRDPNDGAFTVALEDFDIGKANNGEGPNTLALKFNAPSDSRRFSFNIAGPNHNDFDSILFHFNPRQRQKGGQLVVNDKQQGTWGRAVQLPLSQVPLMFGQPSSTLMIQINGDGFDVFVENKHVARLEHRVELPSRPCKLW-------LQFPSCDDSRNPENWTVYRAWWGNK-----EPLAKE---DVSGIAGVDAFDSVHPKKLFVSGLPKIRTDKQVELRTAELERVFRRFGGARGVSCVVPKNSKYAFVEFETEHMCDVALQKMPETSF---PYKINRAR 577
BLAST of jgi.p|Trimin1|92763 vs. uniprot
Match: A0A7S0GIA8_9STRA (Galectin (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GIA8_9STRA) HSP 1 Score: 105 bits (262), Expect = 7.650e-22 Identity = 60/185 (32.43%), Postives = 92/185 (49.73%), Query Frame = 1
Query: 187 FPVSGL-----VWNQDWDPTQETAR-LVVPLTDFALDQ------KQTLVLRMTVPDSSDKWGISLCPRDHADFKNVLYHFNPRSKERGGILVQNSRRDGQWEHAVTDRLNEFPAMFGLTFDT-AIQIDTWGFHVTLAGDYQLSFKHRRPIEEWQQDGQLVLEVPRTDDYGNPQSLKLHQIWWGKK 702
FP SG VW + R LV+ L F + TL ++ P S+++ I++ H DF +VL+HFNPR + +GG LV N R+DG W V L+ P +FG T +Q++ GF V + + +HR + ++ L L+ P TDDYG ++ K+ ++WWG K
Sbjct: 190 FPESGAGGPSAVWTPPDSASDPNDRALVIELPKFQSSKAMRGQGNNTLAIKFAAPPESERFSINIAGPGHRDFFDVLFHFNPRQRHKGGQLVVNERQDGIWGQGVAVPLSTLPLIFGQNSCTLTVQVNGGGFDVFIDEKHCARLEHRTQLPP--EECNLFLQFPSTDDYGKSENWKVFKVWWGHK 372 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|92763 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11719 ID=mRNA_11719|Name=jgi.p|Trimin1|92763|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1069bp|location=Sequence derived from alignment at Contig_80:133026..140046- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AACGCAGGTGCGGCACCGAAACCACTGAGTGCCAACGAGAAAATCCGCCTback to top protein sequence of jgi.p|Trimin1|92763 >Trimin1|92763|CE92762_68 ID=Trimin1|92763|CE92762_68|Name=jgi.p|Trimin1|92763|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=327bp MLQEKREAQQAAAARASSFGAPAPKRAKFVTVAGKTVSTEINKDAFPVSGback to top mRNA from alignment at Contig_80:133026..140046- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11719 ID=mRNA_11719|Name=jgi.p|Trimin1|92763|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7021bp|location=Sequence derived from alignment at Contig_80:133026..140046- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_80:133026..140046- >mRNA_11719 ID=mRNA_11719|Name=jgi.p|Trimin1|92763|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=981bp|location=Sequence derived from alignment at Contig_80:133026..140046- (Tribonema minus UTEX_B_3156 )back to top |