mRNA_2770 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152605
Unique NamemRNA_2770
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|152605 vs. uniprot
Match: A0A835YJF3_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJF3_9STRA)

HSP 1 Score: 181 bits (460), Expect = 5.200e-58
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    1 QLLEVIDDPAAAQLFVIMEFVAGGPVMEFNMLVGRYAAPQTGGPLGAATAGMVFADVISGLAYLHSNCIAHRDIKPENVLVAGDGRAKLGD 273
            QLLEVIDDPAAAQLFVIMEFVAGGPVMEFNMLVGRYAAPQTGGPLGAATAGMVFADVISGLAYLHSNCIAHRDIKPENVLVAGDGRAKLGD
Sbjct:    1 QLLEVIDDPAAAQLFVIMEFVAGGPVMEFNMLVGRYAAPQTGGPLGAATAGMVFADVISGLAYLHSNCIAHRDIKPENVLVAGDGRAKLGD 91
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BLAST of jgi.p|Trimin1|152605 vs. uniprot
Match: K8YRV3_NANGC (Calcium/calmodulin-dependent protein kinase kinase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YRV3_NANGC)

HSP 1 Score: 86.3 bits (212), Expect = 3.670e-19
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    4 LLEVIDDPAAAQLFVIMEFVAGGPVMEFNMLVGRYAAPQTG---GPLGAATAGMVFADVISGLAYLHSNCIAHRDIKPENVLVAGDGRAKLGD 273
            L EVIDD +   L++++E+V GGP+M+F+    RY  P++    G L    A  V +D+++GL YLH + IAHRD+KPENVLV   GR K+ D
Sbjct:   46 LYEVIDDASQDALYLVLEYVPGGPIMDFDAEERRYVCPRSSDGMGVLNEVHAARVLSDMLAGLVYLHVHHIAHRDLKPENVLVGRGGRCKIAD 138
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BLAST of jgi.p|Trimin1|152605 vs. uniprot
Match: A0A7S2RI55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RI55_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.630e-17
Identity = 44/102 (43.14%), Postives = 63/102 (61.76%), Query Frame = 1 
Query:    1 QLLEVIDDPAAAQLFVIMEFVAGGPVMEFNMLVGRYAAP--QTGGPLGAATAGMVFA---------DVISGLAYLHSNCIAHRDIKPENVLVAGDGRAKLGD 273
            +L EVIDD    Q+F+++EFV GG ++++N    R+  P  Q  GP  +  A  ++A         D++ GL +LH N IAHRD+KPENVL+ GDG AK+ D
Sbjct:  143 RLFEVIDDENEDQMFMVLEFVEGGTILDWNPEEERFNLPVSQLKGPKRSGAASAMYAEEEAAAYTVDILRGLKFLHQNHIAHRDLKPENVLITGDGHAKIAD 244
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BLAST of jgi.p|Trimin1|152605 vs. uniprot
Match: A0A4D9D4E9_9STRA (Protein kinase domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4E9_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.210e-16
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:    4 LLEVIDDPAAAQLFVIMEFVAGGPVMEFNMLVGRYAAPQTG---GPLGAATAGMVFADVISGLAYLHSNCIAHRDIKPENVLVAGDGRAKLGD 273
            L EVIDD +   L++++E+V GGP+M+F+    RY   ++    G L    A  V +D+++GL YLH + IAHRD+KPENVLV   GR K+ D
Sbjct:  168 LYEVIDDASQDALYLVLEYVPGGPIMDFDAEERRYVCTRSSDGMGVLNEVHAARVLSDMLAGLVYLHVHHIAHRDLKPENVLVGRGGRCKIAD 260
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BLAST of jgi.p|Trimin1|152605 vs. uniprot
Match: A0A7S3Y6M6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6M6_HETAK)

HSP 1 Score: 79.0 bits (193), Expect = 2.830e-15
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:    1 QLLEVIDDPAAAQLFVIMEFVAGGPVMEFNMLVGRYAAPQTGGPLGAATAGMVFADVISGLAYLHSNCIAHRDIKPENVLVAGDGRAKLGD 273
            Q+ EVIDDP   QLF+++E+V  G VME++     + +  TGG      A     D+ +G+ YLH N I HRD+KPEN+L++   R K+ D
Sbjct:   27 QMFEVIDDPDGDQLFMVLEYVPNGIVMEWDETADAFYSRFTGGVYTEEQAAGHMMDICAGMQYLHQNHICHRDLKPENILLSSQNRCKIAD 117
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BLAST of jgi.p|Trimin1|152605 vs. uniprot
Match: A0A485KAP4_9STRA (Aste57867_2731 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KAP4_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.200e-14
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:    1 QLLEVIDDPAAAQLFVIMEFVAGGPVMEFNMLVGRYAAPQTGGPLGAATAGMV---FADVISGLAYLHSNCIAHRDIKPENVLVAGDGRAKLGD 273
            +L+EVID P   ++F+++E + GG VMEF+    RY  P+ G  + A    MV     D+   L YLH+N I HRDIKPENVLV+ +G  KLGD
Sbjct:  142 KLIEVIDSPDDDKMFLVLELIGGGAVMEFDAKTLRYTYPEEG-MVEADRLLMVQNCLLDMALALDYLHANHICHRDIKPENVLVSDNGFYKLGD 234
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BLAST of jgi.p|Trimin1|152605 vs. uniprot
Match: A0A2R5GT39_9STRA (Protein kinase, putative n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GT39_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.230e-14
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    4 LLEVIDDPAAAQLFVIMEFVAGGPVMEFNMLVGRYAAPQTGGPLGAATAGMVFADVISGLAYLHSNCIAHRDIKPENVLVAGDGRAKLGD 273
            L+E ID+     L++++EFV+GG VM ++    RY+  + GG      A  +   V+ GL YLH+  I HRD+KPEN+L+A DGR K+GD
Sbjct:   92 LVEAIDNEDTDNLYIVLEFVSGGQVMYWSGADARYSK-KGGGVYSENAARPIAQGVLDGLRYLHAQDIIHRDLKPENLLLASDGRVKIGD 180
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BLAST of jgi.p|Trimin1|152605 vs. uniprot
Match: A0A024U9R7_9STRA (CAMKK protein kinase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9R7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.320e-14
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    1 QLLEVIDDPAAAQLFVIMEFVAGGPVMEFNMLVGRYAAPQTGGPLGAATAGMVFA-----DVISGLAYLHSNCIAHRDIKPENVLVAGDGRAKLGD 273
            +L EVID P   ++F+I+E ++GG +ME+N    RY  P+ G    A++A ++       D+   L YLH+N I HRDIKPENVLV   G  KLGD
Sbjct:  172 KLYEVIDSPDDDKMFLILELLSGGQIMEYNATSLRYTYPEEGM---ASSARLLMVQNCTLDIALALEYLHANHICHRDIKPENVLVTDTGFYKLGD 264
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BLAST of jgi.p|Trimin1|152605 vs. uniprot
Match: A0A2V3INP6_9FLOR (Calcium/calmodulin-dependent protein kinase kinase 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INP6_9FLOR)

HSP 1 Score: 75.9 bits (185), Expect = 4.520e-14
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:   13 VIDDPAAAQLFVIMEFVAGGPVMEFNMLVGRYAAPQTGGPLGAATAGMVFADVISGLAYLHSNCIAHRDIKPENVLVAGDGRAKLGD 273
            V +D    + ++++EFVA GP+M    L G         PL    A   F DV++GL YLHSN IAHRDIKP+N+L AGDG  K+ D
Sbjct:  610 VYNDTEEDRFYIVLEFVARGPIMSSAKLKGAE-------PLSEDRARTAFIDVVAGLQYLHSNHIAHRDIKPDNLLEAGDGTVKISD 689
[Close]
BLAST of jgi.p|Trimin1|152605 vs. uniprot
Match: A0A5J4XW52_9CHLO (Calcium calmodulin dependent kinase kinase 2 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XW52_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 8.400e-14
Identity = 39/88 (44.32%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:   10 EVIDDPAAAQLFVIMEFVAGGPVMEFNMLVGRYAAPQTGGPLGAATAGMVFADVISGLAYLHSNCIAHRDIKPENVLVAGDGRAKLGD 273
            EVIDDP A +L ++ME+   GPVM  +    +        PL    A   F DV+ GL YLHS  I H D+KP+N+L+A DGR K+ D
Sbjct:  273 EVIDDPQADKLLLVMEYAEAGPVMRGDRSTEKV-------PLAEGVALKFFRDVLQGLDYLHSKSIVHGDLKPDNMLLASDGRVKISD 353
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152605 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YJF3_9STRA5.200e-58100.00Kinase-like domain-containing protein (Fragment) n... [more]
K8YRV3_NANGC3.670e-1946.24Calcium/calmodulin-dependent protein kinase kinase... [more]
A0A7S2RI55_9STRA5.630e-1743.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9D4E9_9STRA1.210e-1645.16Protein kinase domain-containing protein n=3 Tax=M... [more]
A0A7S3Y6M6_HETAK2.830e-1541.76Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A485KAP4_9STRA4.200e-1446.81Aste57867_2731 protein n=1 Tax=Aphanomyces stellat... [more]
A0A2R5GT39_9STRA4.230e-1443.33Protein kinase, putative n=1 Tax=Hondaea fermental... [more]
A0A024U9R7_9STRA4.320e-1444.79CAMKK protein kinase n=1 Tax=Aphanomyces invadans ... [more]
A0A2V3INP6_9FLOR4.520e-1445.98Calcium/calmodulin-dependent protein kinase kinase... [more]
A0A5J4XW52_9CHLO8.400e-1444.32Calcium calmodulin dependent kinase kinase 2 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_8contigContig_8:495274..496991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152605|gw1.8.297.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04140,ko04152,ko04211,ko04920,ko04921,ko05034,map04140,map04152,map04211,map04920,map04921,map05034
KEGG koko:K07359
EC2.7.11.17
Descriptionpeptidyl-threonine phosphorylation
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0585@1|root,KOG0585@2759|Eukaryota
Evalue7e-22
Seed ortholog2880.D7FNU8
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCa2 /calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases
Ec32 orthologEc-16_002680.1
TranscriptId152927
TrackFilteredModels1
ProteinId152605
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152605gene_2770Tribonema minus UTEX_B_3156 geneContig_8 495274..496991 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2770_1exon_2770_1Tribonema minus UTEX_B_3156 exonContig_8 495274..495504 +
exon_2770_2exon_2770_2Tribonema minus UTEX_B_3156 exonContig_8 496950..496991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2770CDS_2770Tribonema minus UTEX_B_3156 CDSContig_8 495274..495504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152605Trimin1|152605|gw1.8.297.1Tribonema minus UTEX_B_3156 polypeptideContig_8 495274..496991 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2770 ID=mRNA_2770|Name=jgi.p|Trimin1|152605|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_8:495274..496991+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCTGCTGGAAGTTATCGACGACCCAGCGGCCGCGCAGCTCTTTGTCAT
CATGGAGTTCGTTGCTGGGGGCCCCGTAATGGAGTTCAACATGCTGGTAG
GTAGGTATGCGGCGCCCCAAACGGGGGGCCCCCTGGGGGCGGCGACGGCG
GGCATGGTGTTCGCGGACGTGATCTCGGGGCTGGCGTACCTGCACAGCAA
CTGCATCGCGCACAGGGACATCAAGCCGGAGAATGTGCTGGTCGCCGGCG
ATGGTCGCGCCAAGCTAGGTGAC
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protein sequence of jgi.p|Trimin1|152605

>Trimin1|152605|gw1.8.297.1 ID=Trimin1|152605|gw1.8.297.1|Name=jgi.p|Trimin1|152605|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=91bp
QLLEVIDDPAAAQLFVIMEFVAGGPVMEFNMLVGRYAAPQTGGPLGAATA
GMVFADVISGLAYLHSNCIAHRDIKPENVLVAGDGRAKLGD
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mRNA from alignment at Contig_8:495274..496991+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2770 ID=mRNA_2770|Name=jgi.p|Trimin1|152605|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1718bp|location=Sequence derived from alignment at Contig_8:495274..496991+ (Tribonema minus UTEX_B_3156 )
CAGCTGCTGGAAGTTATCGACGACCCAGCGGCCGCGCAGCTCTTTGTCAT
CATGGAGTTCGTTGCTGGGGGCCCCGTAATGGAGTTCAACATGCTGGTAG
GTAGGTATGCGGCGCCCCAAACGGGGGGCCCCCTGGGGGCGGCGACGGCG
GGCATGGTGTTCGCGGACGTGATCTCGGGGCTGGCGTACCTGCACAGCAA
CTGCATCGCGCACAGGGACATCAAGCCGGAGGTGCGCTGCGCGGTGTGTG
CTTGACATACATATTGATGTGTAGGCTGGTGTTGGAGCATATGGCAGTTA
CATGGCGTACCTGCACAGCAACTGCATCGCACACAGGGACATCAAGCCGG
AGGTGCGCTGCGCGATGTACTTGATTACATTCCACTTTGCGCGATTTCAC
GCTGCGCAGTGCTTCGCTTATATATGCTTCGAGCGCATGGCCACCACTCA
TGTCCATGTATATAACTGTTTTGGTTGGTGTCGGGGTGTATGGCGTTCAC
GTGCTCGTAGCTGTTTGCACGCTGAACGGCTACGGCAGTACTGACTTGTA
AGCGTAGTTGAGCGTTGGAGCATATGGCAGTTACATGCTCATGGCCGTTA
CGGCAGATACACTTGCTGGTGGGCAGACCGCATAACAATCACTTCTAGCA
GCACCGTGTGACATGACTGGCGTCCGTCTTCTGTTGTATTGGTCTTCTTG
ACTCTACATTTGGCCTTGCATTGCAACCGGCCTCATAGTGAGCAAAGCTC
TCTAGCTTTCATCACTTGACAGTGCAGAGAGGAAATCTGGACTGTGCTGA
GAGATCACATGGCGCGACTGTGCGGCAGTTGCACCTGCTCTAGCGTTATG
CTTATGTGAAGTGCACTGCGCACGAGGACAGCAAATTGCATGTGCACTTT
CTGATGCGCTGAAAAGGAATGGACTCAAGGAGAATGTTGGTAGAAAAGTT
GGGATATTACGTGCTAGCGCGACCTGGTATCGATAGGGTCAAAATTGGGG
TTGGTATGCGTGCGTGCGCACAGCGTTTCGTCGCAAGCCGCACAGCGTTC
GAATGACACCTACGCACCAAGTTGATGATGTGAGTGGATCCATGCACGGC
TTCCATGTGGTGCGGAGACTGATGTTTACGGTTGGCATTAGAACTAGCTT
AGCGGTAGGGTTAGTGTTAAGGTTGGGGTTAGGGTTGGGGTTAGCCTGGA
GTCGCAATGTCGCATCATATGCAAACTGATCTGTAGAGGAATGCCATTGG
CTTTCATACAACCTTTCTGCACCTTGTGCCGTCAAAGTATAGGCAATGTG
AATTCGCTGGCAGCGGCCACAATTCGTAAGGCATGCAGCTGGCTCCACAT
ATGCCACGTGTGAGATCGTGCACTCCCACTGCTTGGGATTAGGGTTGAAA
TTAGAGTGAGGGTTAGTTAGGGTTACGATTAGGGTTAGACAATACGTGTG
GGATGCAAATGGCACATCAAATACCACGTGTGAGGTCGTGCCTGGGAGGA
CTGCCAAGACGTCACGCCGCATATACACCGCTCTGTTCAGAATTGCCTGT
GGCTCATGGCTAGGGGTCTGCTTTCTGGTTATGACACACCCTCAGAATTC
AGTTAATGACAACCCCTCAGAATTTGCGATATGACGACCTCTTTTGACAA
CTTTTATGTATCTCGTGTGCATGCAGAATGTGCTGGTCGCCGGCGATGGT
CGCGCCAAGCTAGGTGAC
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Coding sequence (CDS) from alignment at Contig_8:495274..496991+

>mRNA_2770 ID=mRNA_2770|Name=jgi.p|Trimin1|152605|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=273bp|location=Sequence derived from alignment at Contig_8:495274..496991+ (Tribonema minus UTEX_B_3156 )
CAGCTGCTGGAAGTTATCGACGACCCAGCGGCCGCGCAGCTCTTTGTCAT
CATGGAGTTCGTTGCTGGGGGCCCCGTAATGGAGTTCAACATGCTGGTAG
GTAGGTATGCGGCGCCCCAAACGGGGGGCCCCCTGGGGGCGGCGACGGCG
GGCATGGTGTTCGCGGACGTGATCTCGGGGCTGGCGTACCTGCACAGCAA
CTGCATCGCGCACAGGGACATCAAGCCGGAGAATGTGCTGGTCGCCGGCG
ATGGTCGCGCCAAGCTAGGTGAC
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