mRNA_2738 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: A0A835YTT9_9STRA (WLM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT9_9STRA) HSP 1 Score: 266 bits (679), Expect = 7.000e-90 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1 Query: 1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINRTKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAARDVRAXXXXXXXRRAQAGAIMQGSG 417 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINRTKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAARDVRAXXXXXXXRRAQAGAIMQGSG Sbjct: 1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINRTKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAARDVRAXXXXXXXRRAQAGAIMQGSG 139
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: D7FMC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC5_ECTSI) HSP 1 Score: 145 bits (366), Expect = 4.500e-38 Identity = 69/120 (57.50%), Postives = 86/120 (71.67%), Query Frame = 1 Query: 1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINR-TKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAARDVRA 357 QVKPICV H+W V L EF P+N GLLG+N+NR KIC+RLR P D + YP+E L +LHEL H G HSA FYR+LD L +EC+ L+ GI+GRNMP+ G+G++LGGG A D RA Sbjct: 35 QVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGSFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGGGRAPEDARA 154
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: A0A6H5J6X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X1_9PHAE) HSP 1 Score: 140 bits (353), Expect = 4.150e-36 Identity = 72/139 (51.80%), Postives = 90/139 (64.75%), Query Frame = 1 Query: 4 VKPICVKHEWSVAHLEEFYPSNKGLLGVNINR-TKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAARDVRAXXXXXXXRRAQAGAIMQGSG 417 VKPICV H+W V L EF P+N LLG+N+NR KIC+RLR P D + YP+E + +LHEL H G HSA FYR+LD L +EC+ L GI+GRNMP+ G+G+ LGGG A D RA +R + IM GSG Sbjct: 81 VKPICVAHKWKVVLLLEFIPNNPSLLGLNVNRGQKICIRLRPPSDEGSFYPYEFIIGTMLHELVHNQIGPHSAKFYRVLDQLNDECDKLTREGITGRNMPFAGDGQPLGGGRAPNDARAAALKAAEKRQRQQGIM-GSG 218
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: A0A5A7V0N8_CUCME (DNA-dependent metalloprotease WSS1-like n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7V0N8_CUCME) HSP 1 Score: 115 bits (289), Expect = 4.970e-30 Identity = 58/111 (52.25%), Postives = 73/111 (65.77%), Query Frame = 1 Query: 1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINR-TKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGG 330 QV+PI K W V L EFYP N GL+GVNI +I +R+R P + +P+E LD +LHEL H+VHG H+ADFY LLD LR+ECE LM+ GI+G + GR LGG Sbjct: 33 QVQPIMRKRRWKVETLSEFYPDNPGLMGVNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECEELMSKGITGTGQGFDLRGRRLGG 143
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: A0A1S4DV14_CUCME (LOW QUALITY PROTEIN: DNA-dependent metalloprotease WSS1-like n=2 Tax=Cucumis melo TaxID=3656 RepID=A0A1S4DV14_CUCME) HSP 1 Score: 115 bits (289), Expect = 1.460e-28 Identity = 58/111 (52.25%), Postives = 73/111 (65.77%), Query Frame = 1 Query: 1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINR-TKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGG 330 QV+PI K W V L EFYP N GL+GVNI +I +R+R P + +P+E LD +LHEL H+VHG H+ADFY LLD LR+ECE LM+ GI+G + GR LGG Sbjct: 33 QVQPIMRKRRWKVETLSEFYPDNPGLMGVNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECEELMSKGITGTGQGFDLRGRRLGG 143
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: A0A6J1HT53_CUCMA (DNA-dependent metalloprotease WSS1-like isoform X1 n=6 Tax=Cucurbita TaxID=3660 RepID=A0A6J1HT53_CUCMA) HSP 1 Score: 115 bits (288), Expect = 3.020e-28 Identity = 58/111 (52.25%), Postives = 71/111 (63.96%), Query Frame = 1 Query: 1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINR-TKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGG 330 QV+PI K W V L EFYP N GL+GVNI +I +R+R P +P+E LD +LHEL H+VHG H+ADFY LLD LR+ECE LM GI+G + GR LGG Sbjct: 56 QVQPIMRKRRWKVETLSEFYPDNPGLMGVNIGGGQEIKLRIRRPNSEWDFFPYEQILDTMLHELCHIVHGPHNADFYNLLDELRKECEELMCKGITGTGQGFDVRGRRLGG 166
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: A0A540K4W6_MALBA (WLM domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540K4W6_MALBA) HSP 1 Score: 113 bits (282), Expect = 5.510e-28 Identity = 63/139 (45.32%), Postives = 80/139 (57.55%), Query Frame = 1 Query: 1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINR-TKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAAR---DVRAXXXXXXXRRAQAGAIM 405 QV+PI KH+W V L EF P+N GL G+N+ +I +RLR P YP+E LD +LHEL H HG H+ADFYRLLD +R ECE L+ GISG + GR LGG S +R RA+ GA++ Sbjct: 33 QVQPIMRKHQWKVKVLSEFCPANPGLQGLNVGGGVEIKLRLRRPNSDWVFYPYEQILDTMLHELCHNEHGPHNADFYRLLDEIRRECEELIAKGISGTGQGFDLPGRRLGGFSRQAPLSSIRQTALAAAETRARRGAVL 171
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: A0A0J8BEE3_BETVV (Uncharacterized protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BEE3_BETVV) HSP 1 Score: 112 bits (281), Expect = 2.100e-27 Identity = 65/139 (46.76%), Postives = 81/139 (58.27%), Query Frame = 1 Query: 1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINR-TKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAARDV---RAXXXXXXXRRAQAGAIM 405 QV+PI KH+W V L EF PSN L+G+NI ++I +RLR P +P+E LD +LHEL H HG H+ADFY+LLD LR ECE LM GI+G + GR LGG S + R RRAQ G +M Sbjct: 35 QVQPIMHKHKWKVQVLSEFCPSNPSLMGLNIGGGSEIKIRLRRPERQWDFFPYEQILDTMLHELCHNQHGPHNADFYKLLDELRLECEELMAKGITGTGRGFDVPGRRLGGFSQPAPLPLLRQSALAAAERRAQRGTLM 173
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: A0A6J1DF71_MOMCH (DNA-dependent metalloprotease WSS1-like isoform X1 n=2 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1DF71_MOMCH) HSP 1 Score: 112 bits (281), Expect = 2.250e-27 Identity = 57/111 (51.35%), Postives = 73/111 (65.77%), Query Frame = 1 Query: 1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINR-TKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGG 330 QV+PI K +W V L EFYP+N GL+GVNI +I +R+R P + +P+E LD +LHEL H+VHG H+ADFY LLD LR+ECE LM GI+ + GR LGG Sbjct: 33 QVQPIMRKRKWKVETLSEFYPANPGLMGVNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECEELMCKGITRTGQGFDLHGRRLGG 143
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: UPI000C1D2C0C (uncharacterized protein LOC111410124 isoform X1 n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D2C0C) HSP 1 Score: 110 bits (276), Expect = 4.080e-26 Identity = 56/111 (50.45%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINR-TKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGG 330 QV+PI KH W V L EF P N LLG+N+ + + +RLR P D YPF LD +LHEL H VHG H+A+FY+L D +R+ECE LM GISG + GR LGG Sbjct: 34 QVQPIMRKHNWRVKVLSEFCPKNSALLGLNVGKGIHVKLRLRRPNRDDQFYPFNEILDTMLHELCHNVHGPHNANFYKLWDEIRKECEDLMNKGISGTGEGFDVPGRRLGG 144 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2738 ID=mRNA_2738|Name=jgi.p|Trimin1|144098|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=417bp|location=Sequence derived from alignment at Contig_8:271233..271649- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAGGTGAAGCCGATCTGCGTGAAGCACGAGTGGAGCGTCGCCCACCTGGAback to top protein sequence of jgi.p|Trimin1|144098 >Trimin1|144098|gw1.8.202.1 ID=Trimin1|144098|gw1.8.202.1|Name=jgi.p|Trimin1|144098|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=139bp QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINRTKICVRLREPRDADALYback to top mRNA from alignment at Contig_8:271233..271649- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2738 ID=mRNA_2738|Name=jgi.p|Trimin1|144098|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=417bp|location=Sequence derived from alignment at Contig_8:271233..271649- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_8:271233..271649- >mRNA_2738 ID=mRNA_2738|Name=jgi.p|Trimin1|144098|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=417bp|location=Sequence derived from alignment at Contig_8:271233..271649- (Tribonema minus UTEX_B_3156 )back to top |