mRNA_12536 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|351019
Unique Name	mRNA_12536
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|351019 vs. uniprot
Match: A0A835YTB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB8_9STRA)

HSP 1 Score: 413 bits (1062), Expect = 3.600e-144
Identity = 229/232 (98.71%), Postives = 229/232 (98.71%), Query Frame = 1

Query:    1 MRHTTGTIAMIGTSTLDSRVGKALSGIEQTLVQAIQEQAALVAKLEEVNAALTQVTQAVMQSTAEVKDASATQLAAILGFYGYTWVAQAAVDPQTDQWKRQARETEAKKQRSDMADFLLRVLCIRCDDGGAAAAPHVFCALVWAVAHAAPQALWLRHALVVLPLWARRGAPALWQGLPLVRHAATPRAAAPPFAVXXXQAAAGRSPATAAARCVYGVVLPXXXXXXXVWAPP 696
            MRHTTGTIAMIGTSTLDSRVGKALSGIEQTLVQAIQEQAALVAKLEEVNAALTQVTQAVMQSTAEVKDASATQLAAILGFYGYTWVAQAAVDPQTDQWKRQARETEAKKQRSDMADFLLRVLCIRCDDGGAAAAPHVFCALVWAVAHAAPQALWLRHALVVLPLWARRGAPALWQGLPLVRHAATPRAAAPPFAVXXXQAAAGRSPATAAARCVYGVVLPXXXX   VWAPP
Sbjct:    1 MRHTTGTIAMIGTSTLDSRVGKALSGIEQTLVQAIQEQAALVAKLEEVNAALTQVTQAVMQSTAEVKDASATQLAAILGFYGYTWVAQAAVDPQTDQWKRQARETEAKKQRSDMADFLLRVLCIRCDDGGAAAAPHVFCALVWAVAHAAPQALWLRHALVVLPLWARRGAPALWQGLPLVRHAATPRAAAPPFAVXXXQAAAGRSPATAAARCVYGVVLPXXXXVLLVWAPP 232

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351019 vs. uniprot

BLAST of jgi.p|Trimin1|351019 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YTB8_9STRA	3.600e-144	98.71	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_78	contig	Contig_78:457016..462037 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|351019\|estExt_Genemark1.C_Ctg_780039
Hectar predicted targeting category	other localisation
TranscriptId	351341
Track	FilteredModels1
ProteinId	351019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351019	gene_12536	Tribonema minus UTEX_B_3156	gene	Contig_78 457016..462037 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351019	Trimin1\|351019\|estExt_Genemark1.C_Ctg_780039	Tribonema minus UTEX_B_3156	polypeptide	Contig_78 457196..462037 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_12536_4	exon_12536_4	Tribonema minus UTEX_B_3156	exon	Contig_78 457016..457523 -
exon_12536_3	exon_12536_3	Tribonema minus UTEX_B_3156	exon	Contig_78 461371..461522 -
exon_12536_2	exon_12536_2	Tribonema minus UTEX_B_3156	exon	Contig_78 461749..461853 -
exon_12536_1	exon_12536_1	Tribonema minus UTEX_B_3156	exon	Contig_78 461924..462037 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_12536	UTR3_12536	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_78 457016..457195 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_12536	CDS_12536	Tribonema minus UTEX_B_3156	CDS	Contig_78 461924..462037 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_78:457016..462037-
coding sequence from alignment at Contig_78:457016..462037-

spliced messenger RNA

>mRNA_12536 ID=mRNA_12536|Name=jgi.p|Trimin1|351019|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=879bp|location=Sequence derived from alignment at Contig_78:457016..462037- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCACACCACCGGCACCATAGCAATGATCGGCACCTCTACGCTGGA
CTCTCGCGTGGGCAAGGCCCTTTCCGGGATCGAGCAAACCTTGGTGCAGG
CCATCCAGGAGCAGGCAGCCCTCGTAGCCAAGCTGGAGGAGGTCAATGCA
GCCTTGACTCAGGTGACGCAAGCTGTGATGCAGTCGACTGCGGAGGTTAA
AGATGCCTCCGCTACGCAGCTCGCGGCCATTCTAGGCTTCTACGGTTACA
CCTGGGTTGCGCAAGCCGCTGTTGATCCGCAAACAGACCAGTGGAAGAGG
CAGGCTCGGGAGACAGAAGCGAAGAAGCAGCGTAGCGACATGGCTGACTT
TCTGCTGCGCGTCCTGTGCATACGCTGTGATGATGGCGGCGCCGCGGCGG
CGCCTCACGTGTTTTGTGCGCTGGTTTGGGCAGTGGCGCACGCGGCGCCG
CAGGCGTTGTGGCTGAGGCATGCGCTGGTGGTGCTGCCTTTGTGGGCGCG
GCGCGGCGCCCCCGCGCTCTGGCAAGGCCTGCCCCTTGTGCGGCATGCGG
CGACGCCGCGCGCTGCTGCGCCTCCGTTTGCGGTGGCGGCGCCTCAGGCT
GCTGCGGGACGTTCGCCGGCGACAGCGGCGGCGCGCTGTGTGTATGGGGT
CGTGCTGCCGCCGCCACCGCCGGTGCTGCTTGTTTGGGCGCCCCCCTGAC
GCAGGGGTGGCTCCACAATGCAGCCTTGAGACGCATGCTGCAGGGCCTTG
CCATCAATGATGGCCTTAAGGCCCTGCAGGCCCATCATCCATCGCAATCG
CGGAGTGTGCGTTGCGCGGCACGGCGCTGTCAGCACGCGCGACGCGCCCC
TCTGAAGGGCCTGGCCCAGTGCGAACAGG

protein sequence of jgi.p|Trimin1|351019

>Trimin1|351019|estExt_Genemark1.C_Ctg_780039 ID=Trimin1|351019|estExt_Genemark1.C_Ctg_780039|Name=jgi.p|Trimin1|351019|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=233bp
MRHTTGTIAMIGTSTLDSRVGKALSGIEQTLVQAIQEQAALVAKLEEVNA
ALTQVTQAVMQSTAEVKDASATQLAAILGFYGYTWVAQAAVDPQTDQWKR
QARETEAKKQRSDMADFLLRVLCIRCDDGGAAAAPHVFCALVWAVAHAAP
QALWLRHALVVLPLWARRGAPALWQGLPLVRHAATPRAAAPPFAVAAPQA
AAGRSPATAAARCVYGVVLPPPPPVLLVWAPP*

mRNA from alignment at Contig_78:457016..462037-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12536 ID=mRNA_12536|Name=jgi.p|Trimin1|351019|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5022bp|location=Sequence derived from alignment at Contig_78:457016..462037- (Tribonema minus UTEX_B_3156 )
ATGCGGCACACCACCGGCACCATAGCAATGATCGGCACCTCTACGCTGGA
CTCTCGCGTGGGCAAGGCCCTTTCCGGGATCGAGCAAACCTTGGTGCAGG
CCATCCAGGAGCAGGTGGCACAGGAGGCGAGGACATGTCGACAAAAAACA
CAGCTCCATCCAAGGCGCTGTGGACGCCAGCAAGGCAGCCCTCGTAGCCA
AGCTGGAGGAGGTCAATGCAGCCTTGACTCAGGTGACGCAAGCTGTGATG
CAGTCGACTGCGGAGGTTAAAGATGCCTCCGCTACGCAGGTGCGGGCGTT
AGTTGCCAACGGCCAGGTGGCAGCACGTGCTGCCAACGCGGCTGCTGAAG
ACGGGGCATTTCTAGTACGGCTACCTGATAGTGGCGGCCATCTGCCGGAG
ATTATTGGTCAGGGAGTGCGGCCCTCCAGTGGCTTGAGCAAGTATTATCT
CAAGGGGAGGCGGGTGTTCCGGAGGGCCAGCTTCCTGCGACGGTCAAGCG
CTGACTTATGCGCAGCTCGCGGCCATTCTAGGCTTCTACGGTTACACCTG
GGTTGCGCAAGCCGCTGTTGATCCGCAAACAGACCAGTGGAAGAGGCAGG
CTCGGGAGACAGAAGCGAAGAAGCAGCGTAGCGACATGGCTGACTTTCTG
CTGCGCGTCCTGTGCATGTAGGTGCCACAGTGTGCGAAGTATCCATTTCT
AGCACCTGACTGCTGCATGTTGGGCTCAGTGTTCGACCAGTAATAGTACA
CATGATGATGCCACGCACTCCACAAAATCCCCAACACTGCTCAGTGCACG
CCCTCCCCAATGCGCACGTTGCTTGCATTGCATCGTTCAGGTTGCTCTGC
TGACCCGTTTGATAGCAACTTGAAGGTGATAGCACTGGCAGCAGACCCTA
TGCTCATCCACTCTGAAAGATGTCACTTGAAGCTTCATTGCGCACGAGGA
TGGCGACACATGTATAAGATCAGCTGTGGGCATCAGTTCACTCTTTGCTG
GACTACAGGCCTTTTTGCACATCCATTGCGATCCTCTTTTTGACAAAAAC
CTTTGTGTGAGCAAGTATGTTACAAACAACAGCTCTGCACACAACACTCT
GCGACGCAGAGGCACAACAACAGAAACGACAACATACACCGCAAGCTTGG
TGTATGTATGAAGAGTCTGCCAGCACTTTCAAGTTGACACACTCGAGAGC
ATGGCACGGGCATTGTGGAGCTTGTCTTATTTGTAGATGTGTTCAAGTTG
TTGTAGACTCATTCCAGACTTCCTCTGCTGGTGGTTCCTGGCACTCTGTC
TGGCTATATGAGCCTGAATCTGATCAGACAGAGATGTGTCAGTCAAATTT
CCAGAACCCAGAAACTAGGGTTTGCAGGCGGAGGACAGATGAACCAATGT
AACTGTTTGGGGCATCATATGGCACCAAAGAAGTGTAGTAATGGGAGCAT
GCAGTGCCACGCTTGATGCTTGATAATGCTTTTGTGGTGCAAGCACCTCA
CCAAATCTGTACACCATCCCACAATTCAATGTGACAATTGTCTTCACTCA
GAGATAGACAGTGGCTTCACATGCTCGTTCAGCGCCACTGCCCATGTGTG
ATCTACACCTGCAAAGGCTGAGGGCCGCTGACACCGCAACAAAAGACTAC
AAGTACAAAAGTACAAACGTCCCCAGCTCGTTAACGCCGAAAGGCGTGGC
AGCGAATGCGGCTGGTTTGGTGGGTGGGCTGGGCTGCAGGGCTTGCAGGA
GCTAGCACCAGCGGCCCTCAGGTGATGCCAGCGTGCGTAGCCCCTTCGAG
AGAACTTCAAACGTGTGGTGGTGTCTCGGAAGCCCTGGCTGGCGTGCGGA
GGAGGGACAGGCAGCGGCTTGGCGTGCTTGGAGAGCAAGCGGAGTCGGCT
GCACGCCACGGCACCAACCACAAGTTACTCGCAGCGGTAAATGGCAATAT
CTTGTCAGGCTTGCAGCCTGCGGTGAGCCGTGACCTCGCTCATCAAGGAG
GCGATGCTTTACTTAGTTATATAGCCTTTCTCTCTAGCGTCAGCGCCTGG
CGCCCAGTGACTCCCTCTGCTTATCTCTATGATATCGGGGTTCACGTAGA
TAGCCACAATCTCCAGTTCAGGGCCCATCATGGTGACCTTGGCCTGCATG
AAAACTTTGAGATGGAGTCTGCGTGGAGCTGGGTGGCCCTTAGAAGGGTC
TGTCTGTGGGGGGAGAGTCTTGCAGCTTTGTTTGGTATCCCTGCTAGTGT
GTGGGGGACAGTCGCTTGCGGATGCTTTGTTGGGGGTGATATGGGAGGCC
CGGTGAACCACCGTCCCGCTCATCAAGGAGGCGATGCTTTGCTTAGTTAT
ATGGCCTTTCTTTCTAGCGTCAGCGCCTGGCGCCCAGTGACTCCCTCTGC
TTATCTTTATGATATCGGGGTTCACGTAGATAGCCACAATCTCCAGTTCA
GGGCCCATTATGGTGACCTTGGCCTGCATGAAAACTGTGAGATGGAGTCT
GCGTGGAGCTGGGTGGCCCTAAGACGGGTCTGTCTGTGGGGGGAGAGTCT
TGTAGCTTTGTTTGGTATCCCTGCTAGTATTCGGGGGACAGTCGCTTCGG
GTGCTTTGTTGGGGGTGATGTGGGGGGCGGGGTGTGGCGTGCAAGCTTTG
CATGCTACATCCAAGAGTGAGAACAAGGCGACACACCTACAACATGGCAT
TTCCACAGCCACAAGTGGAATATAATAAAAGTACAGCAGCAACAGTCGCT
GTCCTGCGGGTTGCGAGCCCCCATTGGAGGAGTCTTGTAGTGGAGTGACA
CTGGATGACACGGCTGGTGCATCCAATACAATAAAATACTTAAGTTGTTG
ACTAGTCGAGGAATACAACAGTATTCATGTACTGTGCTACCCTGCGCATT
GGACGCGAGCATTGACAACTTGAACACACCTGGCACGTGCGCAAGTAAAA
AACAGCGTCCCAAGCTCGTTAACGCCGAAAGGCGTGGCAGCGAATGCGGC
TGGTTTGGTAGGTGGGCTGGGCTGCAGGGCTTGCAGGAGCTAGCACCAGC
GGCCCTCAGGTGATGCCAGCGTGCGTAGCCCCTTCGAGAGAACTTCAAAC
GTGTGGTGGTGTCTCGGAAGCCCTGGCTGGCGTGCGGAGGAGGGACAGGC
AGCGGCTTGGCGTGCTTGGGCAGCAAGCGGAGTCGGCTGCACGCCACGGC
ACCAACCACAAGTTGCTCGCAGCGGTAAATGGCAATATCTTGTCAGGCTT
GCAGCCTGCGGTGAGCCGTGACCTCGCTCATCAAGGAGGCGATGCTTTAC
TTAGTTATATAGCCTTTCTCTCTAGCGTCAGCGCCTGGCGCCCAGTGACT
CCCTCTGCTTATCGCTATGATATCGGGGTTCACGTAGATCGCCACCATCT
CCAGTTCAGGGCCCATCATGGTGACCTTGGCCTGCATGAAAACTTTGAGA
TGGAGTCTGCGTGGAGCTGGGTGGCCCTTAGAAGGGTCTGTCTGTGGGGG
GAGAGTCTTGCAGCTTTGTTTGGTATCCCTGCTAGTGTGTGGGGGACAGT
CGCTTGCGGATGCTTTGTTGGGGGTGATATGGGAGGCCCGGTGAACCACC
GTCCCGCTCATCAAGGAGGCGATGCTTTGCTTAGTTATATAGCCTTTCTT
TCTAGCGTCAGCGCCTGGCGCCCAGTGACTCCCTCTGCTTATCTTTATGA
TATCGGGGTTCACGTAGATAGCCACAATCTCCAGTTCAGGGCCCATTATG
GTGACCTTGGCCTGCATGAAAACTTTGAGATGGAGTCTGCGTGGAGCTGG
GTGGCCCTAAGACGGGTCTGTCTGTGGGGGGAGAGTCTTGTAGCTTTGTT
TGGTATCCCTGCTAGTATTCGGGGGACAGTCGCTTGCGGGTGCTTTGTTG
GGGGTGATGTGGGGGGCGGGGTGTGGCGTGCAAGCTTTGCATGCTACATC
CAAGAGTGAGAACAAGGCGACACACCTACAACATGGCATTTCCACAGCCA
CAAGTGGAATATAATAAAAGTACTGCTAGTAGTTTTGAAGTGATGCAGGC
CTTGCGCTGGCAAAAGGATGCGTCTTGACCTGCACTCGATGACGACATGC
AAACCTGTAAACGACAATGCGTGGGTCCACCAGGTGACATCACTGCCCAG
CGCAGCTGCCGTAGCATTACTCATTAAATTTTACTGCCACACACAATGCA
TGACCATTGGCTGCTTCAGCCAGCTCCAAAGTTTTCTGTCTGTTTCTGAG
ATGCAGCAATTTGATCACACTCTGAACCTGTTGTTGATACAAAACGAAAG
ATGGTATGATGTATGTCATTGCGATTTTGCTGTGCACATGTGCACATTTT
ATTTGGGCATTCAGGCATGCCGTCAGATAAGGCTGGCCAGTGCGCAGCCC
ACTGAAGGTCAGGAACAGTTGGCAGCTGACTGAAGCATCGGCGTGCTAAC
AACATGTTACACACTGTGTTCTGCACTCAGTCAGTGTCGGCACACACCTG
CTCTGCTGCCGCAGACGCTGTGATGATGGCGGCGCCGCGGCGGCGCCTCA
CGTGTTTTGTGCGCTGGTTTGGGCAGTGGCGCACGCGGCGCCGCAGGCGT
TGTGGCTGAGGCATGCGCTGGTGGTGCTGCCTTTGTGGGCGCGGCGCGGC
GCCCCCGCGCTCTGGCAAGGCCTGCCCCTTGTGCGGCATGCGGCGACGCC
GCGCGCTGCTGCGCCTCCGTTTGCGGTGGCGGCGCCTCAGGCTGCTGCGG
GACGTTCGCCGGCGACAGCGGCGGCGCGCTGTGTGTATGGGGTCGTGCTG
CCGCCGCCACCGCCGGTGCTGCTTGTTTGGGCGCCCCCCTGACGCAGGGG
TGGCTCCACAATGCAGCCTTGAGACGCATGCTGCAGGGCCTTGCCATCAA
TGATGGCCTTAAGGCCCTGCAGGCCCATCATCCATCGCAATCGCGGAGTG
TGCGTTGCGCGGCACGGCGCTGTCAGCACGCGCGACGCGCCCCTCTGAAG
GGCCTGGCCCAGTGCGAACAGG

Coding sequence (CDS) from alignment at Contig_78:457016..462037-

>mRNA_12536 ID=mRNA_12536|Name=jgi.p|Trimin1|351019|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=699bp|location=Sequence derived from alignment at Contig_78:457016..462037- (Tribonema minus UTEX_B_3156 )
ATGCGGCACACCACCGGCACCATAGCAATGATCGGCACCTCTACGCTGGA
CTCTCGCGTGGGCAAGGCCCTTTCCGGGATCGAGCAAACCTTGGTGCAGG
CCATCCAGGAGCAGGCAGCCCTCGTAGCCAAGCTGGAGGAGGTCAATGCA
GCCTTGACTCAGGTGACGCAAGCTGTGATGCAGTCGACTGCGGAGGTTAA
AGATGCCTCCGCTACGCAGCTCGCGGCCATTCTAGGCTTCTACGGTTACA
CCTGGGTTGCGCAAGCCGCTGTTGATCCGCAAACAGACCAGTGGAAGAGG
CAGGCTCGGGAGACAGAAGCGAAGAAGCAGCGTAGCGACATGGCTGACTT
TCTGCTGCGCGTCCTGTGCATACGCTGTGATGATGGCGGCGCCGCGGCGG
CGCCTCACGTGTTTTGTGCGCTGGTTTGGGCAGTGGCGCACGCGGCGCCG
CAGGCGTTGTGGCTGAGGCATGCGCTGGTGGTGCTGCCTTTGTGGGCGCG
GCGCGGCGCCCCCGCGCTCTGGCAAGGCCTGCCCCTTGTGCGGCATGCGG
CGACGCCGCGCGCTGCTGCGCCTCCGTTTGCGGTGGCGGCGCCTCAGGCT
GCTGCGGGACGTTCGCCGGCGACAGCGGCGGCGCGCTGTGTGTATGGGGT
CGTGCTGCCGCCGCCACCGCCGGTGCTGCTTGTTTGGGCGCCCCCCTGA