Trimin1|351002|estExt_Genemark1.C_Ctg_770060 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|351002
Unique Name	Trimin1\|351002\|estExt_Genemark1.C_Ctg_770060
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	126

Homology

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BLAST of jgi.p|Trimin1|351002 vs. uniprot
Match: A0A835YN30_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN30_9STRA)

HSP 1 Score: 249 bits (636), Expect = 9.280e-84
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0

Query:    1 MADMDKRRTGRLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRVDEMKKRREIEEIKAKFGVGGEAAAI 125
            MADMDKRRTGRLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRVDEMKKRREIEEIKAKFGVGGEAAAI
Sbjct:    1 MADMDKRRTGRLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRVDEMKKRREIEEIKAKFGVGGEAAAI 125

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BLAST of jgi.p|Trimin1|351002 vs. uniprot
Match: A0A7S2C985_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C985_9STRA)

HSP 1 Score: 199 bits (506), Expect = 6.610e-64
Identity = 97/120 (80.83%), Postives = 109/120 (90.83%), Query Frame = 0

Query:    2 ADMDKRRTGRLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRVDEMKKRREIEEIKAKFGVGGE 121
            AD+  +R GRLPPEVNR+LY+RNLPFKIT++EMYDIFGKYGAIRQIR+GDKPDTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYLIVLYYQ+ +  KR+D  KKRRE+EE+KAKF V GE
Sbjct:    4 ADLAAKR-GRLPPEVNRVLYIRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQAARMEKRIDNDKKRRELEELKAKFNVSGE 122

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BLAST of jgi.p|Trimin1|351002 vs. uniprot
Match: A0A7S2DAY0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAY0_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.320e-61
Identity = 93/124 (75.00%), Postives = 107/124 (86.29%), Query Frame = 0

Query:    1 MADMDKRRTGRLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRVDEMKKRREIEEIKAKFGVGGEAAA 124
            MA   KR   RLPPEVNR+LYVRNLPFKIT++EMYDIFGKYGAIRQIR+GDKPDTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYL+VLYYQ+++  KR+D  KKR+E+EE+K K+ V  +  A
Sbjct:    4 MATGGKRGNARLPPEVNRVLYVRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQASRMQKRMDNDKKRKELEELKQKYNVSADEVA 127

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BLAST of jgi.p|Trimin1|351002 vs. uniprot
Match: A0A6S9GFW4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GFW4_HETAK)

HSP 1 Score: 191 bits (484), Expect = 1.400e-60
Identity = 89/112 (79.46%), Postives = 104/112 (92.86%), Query Frame = 0

Query:    5 DKRRTGRLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRVDEMKKRREIEEIKAKF 116
            ++R   RLPPEVNR+LYVRNLPFKITA+EMYDIFGKYGAIRQIR+GDKPDT+GTAFVVYEDIYDAK AVDHLSGFNVCGRYLIVLYYQ T+  K++D+ ++RRE+EE+KAK+
Sbjct:    6 NRRANARLPPEVNRVLYVRNLPFKITAEEMYDIFGKYGAIRQIRIGDKPDTKGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQPTRMAKKMDQERERRELEELKAKY 117

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BLAST of jgi.p|Trimin1|351002 vs. uniprot
Match: A0A7S2S8J7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8J7_9STRA)

HSP 1 Score: 189 bits (480), Expect = 6.680e-60
Identity = 87/119 (73.11%), Postives = 107/119 (89.92%), Query Frame = 0

Query:    6 KRRTGRLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRVDEMKKRREIEEIKAKFGVGGEAAA 124
            +R   RLPPEVNR++YVRNLPFKI+A+E+YDIFGKYGA+RQ+RLGDKPDTRGTAFVVYEDIYDAK AVDHL+GFNVCGRYL+VLYYQ++K  +R+D  +KR+E+EE+K K+ +  EAAA
Sbjct:   11 RRGNARLPPEVNRVVYVRNLPFKISAEEIYDIFGKYGALRQVRLGDKPDTRGTAFVVYEDIYDAKNAVDHLNGFNVCGRYLVVLYYQASKMQERIDNQRKRQELEELKKKYNIQTEAAA 129

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BLAST of jgi.p|Trimin1|351002 vs. uniprot
Match: A0A1B6C7B8_9HEMI (RRM domain-containing protein n=4 Tax=Arthropoda TaxID=6656 RepID=A0A1B6C7B8_9HEMI)

HSP 1 Score: 188 bits (478), Expect = 1.080e-59
Identity = 90/121 (74.38%), Postives = 105/121 (86.78%), Query Frame = 0

Query:    1 MADMDKRRTGRLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRVDEMKKRREIEEIKAKFGVGGE 121
            MA M +R   RLPPEVNR+LY+RNLP+KITA+EMYDIFGKYGAIRQIR+G+ PDTRGTAFVVYEDI+DAK A DHLSGFNVC RYL+VLYYQ+ KA KRVD  KK+ EIE++K K+G+G E
Sbjct:    1 MAMMQRRANVRLPPEVNRVLYIRNLPYKITAEEMYDIFGKYGAIRQIRVGNTPDTRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQANKAFKRVDVDKKKEEIEKVKTKYGLGEE 121

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BLAST of jgi.p|Trimin1|351002 vs. uniprot
Match: UPI0008F9A0EF (splicing factor 3B subunit 6-like protein n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9A0EF)

HSP 1 Score: 186 bits (472), Expect = 9.120e-59
Identity = 88/118 (74.58%), Postives = 103/118 (87.29%), Query Frame = 0

Query:    1 MADMDKRRTGRLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRVDEMKKRREIEEIKAKFGV 118
            MA M +R + RLPPEVNR+LY+RNLP+KITA+EMYDIFGKYGAIRQIR+G  PDTRGTAFVVYEDI+DAK A DHLSGFNVC RYL+VLYYQS KA K+VD  KK+ EIE++K K+G+
Sbjct:    1 MAMMQRRASVRLPPEVNRVLYIRNLPYKITAEEMYDIFGKYGAIRQIRVGSTPDTRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKKVDVDKKKEEIEKVKTKYGI 118

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BLAST of jgi.p|Trimin1|351002 vs. uniprot
Match: A0A7R9BDY3_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BDY3_9CRUS)

HSP 1 Score: 188 bits (478), Expect = 1.230e-58
Identity = 87/117 (74.36%), Postives = 105/117 (89.74%), Query Frame = 0

Query:    4 MDKRRTGRLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRVDEMKKRREIEEIKAKFGVGG 120
            M K+ T RLPPEVNR+LYVRNLP+KI+ DEMYDIFGKYGAIRQIR+G+ P+TRGTAFVVYEDI+DAK+A DHLSGFNVCGRYL+VLYYQ+ KA KR+D  +KR ++E++KAKF +GG
Sbjct:   77 MQKKNTVRLPPEVNRVLYVRNLPYKISGDEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKSACDHLSGFNVCGRYLVVLYYQANKAFKRMDSDQKREDLEKVKAKFNLGG 193

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BLAST of jgi.p|Trimin1|351002 vs. uniprot
Match: A0A482WYA4_LAOST (RRM domain-containing protein n=5 Tax=Auchenorrhyncha TaxID=1955247 RepID=A0A482WYA4_LAOST)

HSP 1 Score: 186 bits (471), Expect = 1.250e-58
Identity = 88/121 (72.73%), Postives = 104/121 (85.95%), Query Frame = 0

Query:    1 MADMDKRRTGRLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRVDEMKKRREIEEIKAKFGVGGE 121
            MA M +R   RLPPEVNR+LY+RNLP+KITA+EMYDIFGKYGAIRQIR+G+ PDTRGTAFVVYEDI+DAK A DHLSGFNVC RYL+VLYYQ+ KA KRVD  KK+ E+E++K K+G+  E
Sbjct:    1 MAMMQRRANVRLPPEVNRVLYIRNLPYKITAEEMYDIFGKYGAIRQIRVGNTPDTRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQANKAFKRVDVDKKKDELEKVKTKYGINDE 121

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BLAST of jgi.p|Trimin1|351002 vs. uniprot
Match: C4WTB0_ACYPI (ACYPI001295 protein n=7 Tax=Aphididae TaxID=27482 RepID=C4WTB0_ACYPI)

HSP 1 Score: 184 bits (467), Expect = 5.270e-58
Identity = 85/121 (70.25%), Postives = 105/121 (86.78%), Query Frame = 0

Query:    1 MADMDKRRTGRLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRVDEMKKRREIEEIKAKFGVGGE 121
            +A M ++   RLPPE+NR+LY+RNLP+KITA+EMYDIFGKYGAIRQIR+G+ PDTRGTAFVVYEDI+DAK A DHLSGFNVC RYL+VLYYQSTKA K++D  KK+ E+E++K K+G+  E
Sbjct:    3 LASMQRKTNVRLPPEINRVLYIRNLPYKITAEEMYDIFGKYGAIRQIRVGNTPDTRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSTKAFKKLDTDKKKAELEKVKMKYGLSEE 123

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351002 vs. uniprot

BLAST of jgi.p|Trimin1|351002 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YN30_9STRA	9.280e-84	100.00	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A7S2C985_9STRA	6.610e-64	80.83	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S2DAY0_9STRA	1.320e-61	75.00	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A6S9GFW4_HETAK	1.400e-60	79.46	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S2S8J7_9STRA	6.680e-60	73.11	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A1B6C7B8_9HEMI	1.080e-59	74.38	RRM domain-containing protein n=4 Tax=Arthropoda T...	[more]
UPI0008F9A0EF	9.120e-59	74.58	splicing factor 3B subunit 6-like protein n=1 Tax=...	[more]
A0A7R9BDY3_9CRUS	1.230e-58	74.36	Hypothetical protein n=1 Tax=Notodromas monacha Ta...	[more]
A0A482WYA4_LAOST	1.250e-58	72.73	RRM domain-containing protein n=5 Tax=Auchenorrhyn...	[more]
C4WTB0_ACYPI	5.270e-58	70.25	ACYPI001295 protein n=7 Tax=Aphididae TaxID=27482 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 19..89 e-value: 2.4E-17 score: 73.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 20..86 e-value: 6.5E-16 score: 57.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 18..93 score: 15.852027
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 14..117 e-value: 2.4E-21 score: 77.7
None	No IPR available	PANTHER	PTHR12785:SF7	SPLICING FACTOR 3B SUBUNIT 6	coord: 4..112
None	No IPR available	PANTHER	PTHR12785	SPLICING FACTOR 3B	coord: 4..112
IPR034150	SF3B6, RNA recognition motif	CDD	cd12241	RRM_SF3B14	coord: 16..92 e-value: 1.72697E-54 score: 163.171
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 17..96

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_77	contig	Contig_77:659505..661419 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351002	mRNA_12499	Tribonema minus UTEX_B_3156	mRNA	Contig_77 659323..661535 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|351002|estExt_Genemark1.C_Ctg_770060 ID=Trimin1|351002|estExt_Genemark1.C_Ctg_770060|Name=jgi.p|Trimin1|351002|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=126bp
MADMDKRRTGRLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLG
DKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRV
DEMKKRREIEEIKAKFGVGGEAAAI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR034150	SF3B6_RRM
IPR035979	RBD_domain_sf