Trimin1|350935|estExt_Genemark1.C_Ctg_750086 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350935
Unique NameTrimin1|350935|estExt_Genemark1.C_Ctg_750086
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length115
Homology
BLAST of jgi.p|Trimin1|350935 vs. uniprot
Match: A0A835YKF7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKF7_9STRA)

HSP 1 Score: 224 bits (572), Expect = 2.380e-74
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
Query:    1 MAVNVTRHTVVIQPDFHLRIVVAGLGVLAVVYLLLLWQCWGTLNPRAAARRHKERRALQASYDEAFQRRDDLLYHLDWARQRGEKAEVKNLQGQLEGMLEELDDLESQRLNAAG 114
            MAVNVTRHTVVIQPDFHLRIVVAGLGVLAVVYLLLLWQCWGTLNPRAAARRHKERRALQASYDEAFQRRDDLLYHLDWARQRGEKAEVKNLQGQLEGMLEELDDLESQRLNAAG
Sbjct:    1 MAVNVTRHTVVIQPDFHLRIVVAGLGVLAVVYLLLLWQCWGTLNPRAAARRHKERRALQASYDEAFQRRDDLLYHLDWARQRGEKAEVKNLQGQLEGMLEELDDLESQRLNAAG 114          
BLAST of jgi.p|Trimin1|350935 vs. uniprot
Match: A0A7S3HFQ8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HFQ8_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.840e-11
Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 0
Query:   24 GLGVLAVVYLLLLWQCWGTLNPRAAARRHKERRALQASYDEAFQRRDDLLYHLDWARQRGEKAEVKNLQGQLEGMLEELDDLES 107
             + V A  YL  +  C+GT   R A   +K  + +++ Y E F  RD+L+YH+ WA+ RGE  E +NL  QLE + +E+D +E+
Sbjct:   27 AITVFAFFYLSAMKMCFGTYFVRTAMSNYKSNKVIRSRYYELFSSRDNLMYHISWAKSRGELEEARNLMRQLEKVDKEIDQIET 110          
BLAST of jgi.p|Trimin1|350935 vs. uniprot
Match: W7TKY8_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKY8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.570e-9
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 0
Query:   33 LLLLWQCWGTLNPRAAARRHKERRALQASYDEAFQRRDDLLYHLDWARQRGEKAEVKNLQGQLEGMLEELDDLESQRLNAAG 114
            L +L  C+GT +        +ERR L+ +Y  A+QRR+D +YH DWA+ RG  +E K L  ++E    ELD L+    N  G
Sbjct:   31 LFVLRICFGTFSLSRVLAHFEERRHLERAYALAYQRREDSIYHRDWAKSRGAFSEAKRLDAEIEETESELDSLDDTLGNPQG 112          
BLAST of jgi.p|Trimin1|350935 vs. uniprot
Match: A0A4D9CYA4_9STRA (AAA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYA4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.030e-8
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 0
Query:   33 LLLLWQCWGTLNPRAAARRHKERRALQASYDEAFQRRDDLLYHLDWARQRGEKAEVKNLQGQLEGMLEELDDLESQRLNAAG 114
            LL+L  C+GT +        +ERR L+ +Y  A+QRR+D +YH DWA+ RG  +E K L  ++E    ELD L+ +  N  G
Sbjct:   31 LLILRICFGTFSLSRVLAHFEERRHLERAYALAYQRREDSIYHRDWAKSRGAFSEAKRLDAEIEETESELDSLDEKIGNPQG 112          
BLAST of jgi.p|Trimin1|350935 vs. uniprot
Match: A0A6H5L5M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M4_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.560e-8
Identity = 32/94 (34.04%), Postives = 56/94 (59.57%), Query Frame = 0
Query:   13 QPDFHLRIVVAGLGVLAVVYLLLLWQCWGTLNPRAAARRHKERRALQASYDEAFQRRDDLLYHLDWARQRGEKAEVKNLQGQLEGMLEELDDLE 106
             PD  +R+++    +L  +Y+ +++ CWGT++        KER+ L+ +Y+   QRR+D+LYH+  A+QRGE  +   L  QL  +  +LD +E
Sbjct:    8 HPD--VRVLLYSFLLLLGIYVSVMYTCWGTVSLSKVKAEFKERQDLERAYEATLQRREDMLYHIGGAQQRGEHQQAAVLDKQLLRVDGDLDLIE 99          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350935 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YKF7_9STRA2.380e-74100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3HFQ8_9STRA2.840e-1138.10Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
W7TKY8_9STRA5.570e-939.02Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A4D9CYA4_9STRA1.030e-840.24AAA domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A6H5L5M4_9PHAE1.560e-834.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 81..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_75contigContig_75:607287..608608 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350935mRNA_7674Tribonema minus UTEX_B_3156 mRNAContig_75 607287..608778 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350935|estExt_Genemark1.C_Ctg_750086 ID=Trimin1|350935|estExt_Genemark1.C_Ctg_750086|Name=jgi.p|Trimin1|350935|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=115bp
MAVNVTRHTVVIQPDFHLRIVVAGLGVLAVVYLLLLWQCWGTLNPRAAAR
RHKERRALQASYDEAFQRRDDLLYHLDWARQRGEKAEVKNLQGQLEGMLE
ELDDLESQRLNAAG*
back to top