mRNA_10527 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350846
Unique NamemRNA_10527
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350846 vs. uniprot
Match: A0A835YK81_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK81_9STRA)

HSP 1 Score: 218 bits (556), Expect = 1.080e-69
Identity = 123/125 (98.40%), Postives = 123/125 (98.40%), Query Frame = 3 
Query:   36 MTKCTIWADCSCSTAEGXXXXXXXXXXTVSIKALEDAKASACKFGDCPCGDSXXXXXGXXXGGTVERTEEQWIALAKKSKAKAILFDCSGPGYSTGECPWSDCSCKASGGECACKESCGCGSTKA 410
            MTKCTIWADCSCSTAEG XXXXXXXXXTVSIKALEDAKASACKFGDCPCGDSXXXXX XXXGGTVERTEEQWIALAKKSKAKAILFDCSGPGYSTGECPWSDCSCKASGGECACKESCGCGSTKA
Sbjct:    1 MTKCTIWADCSCSTAEGCXXXXXXXXXTVSIKALEDAKASACKFGDCPCGDSXXXXXXXXXGGTVERTEEQWIALAKKSKAKAILFDCSGPGYSTGECPWSDCSCKASGGECACKESCGCGSTKA 125
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350846 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YK81_9STRA1.080e-6998.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_74contigContig_74:217373..219352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350846|estExt_Genemark1.C_Ctg_740021
Hectar predicted targeting categoryother localisation
TranscriptId351168
TrackFilteredModels1
ProteinId350846
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350846gene_10527Tribonema minus UTEX_B_3156 geneContig_74 217373..219352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350846Trimin1|350846|estExt_Genemark1.C_Ctg_740021Tribonema minus UTEX_B_3156 polypeptideContig_74 217678..219317 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10527_6exon_10527_6Tribonema minus UTEX_B_3156 exonContig_74 217373..217773 -
exon_10527_5exon_10527_5Tribonema minus UTEX_B_3156 exonContig_74 218136..218167 -
exon_10527_4exon_10527_4Tribonema minus UTEX_B_3156 exonContig_74 218771..218848 -
exon_10527_3exon_10527_3Tribonema minus UTEX_B_3156 exonContig_74 218934..218991 -
exon_10527_2exon_10527_2Tribonema minus UTEX_B_3156 exonContig_74 219100..219164 -
exon_10527_1exon_10527_1Tribonema minus UTEX_B_3156 exonContig_74 219269..219352 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10527UTR3_10527Tribonema minus UTEX_B_3156 three_prime_UTRContig_74 217373..217677 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10527CDS_10527Tribonema minus UTEX_B_3156 CDSContig_74 219269..219317 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10527UTR5_10527Tribonema minus UTEX_B_3156 five_prime_UTRContig_74 219318..219352 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10527 ID=mRNA_10527|Name=jgi.p|Trimin1|350846|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=718bp|location=Sequence derived from alignment at Contig_74:217373..219352- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAACGAGAGCTAAACAGGCCGTTTCAATCGCCATCATGACCAAGTGCACC
ATCTGGGCCGATTGCTCATGCTCCACGGCCGAGGGCTGCAAGTGCGGCGA
GTCCTGCTCCTGCGGCACCGTCAGCATTAAGGCGCTCGAGGACGCCAAGG
CCTCAGCCTGCAAGTTCGGCGACTGCCCCTGCGGAGACAGCTGCGGCTGC
GGGTCGGGCTGCGGCTGCGGCGGCACCGTGGAGCGCACCGAGGAGCAGTG
GATCGCTCTGGCGAAGAAGTCTAAGGCCAAGGCAATCCTGTTTGACTGCT
CCGGTCCCGGGTACTCAACGGGGGAGTGCCCCTGGAGCGACTGCTCCTGC
AAGGCGTCCGGCGGCGAGTGCGCGTGCAAGGAGTCGTGCGGCTGCGGCAG
CACCAAGGCCTGAGCGCTGCCTCCGCATCTGAGCGCTGACGCGACACTCC
CTTTTTCCTCTGTAGACGACTAGCAATCTCCTGTCGCGCCACTGGCGTCC
GCTCGGCCTGAAGGGCCACGGCACACAGGGGGCCGCAGCCGAGAGAGAGT
AACTGTGCGTAGTTCATGTGTGTGTAAGTTTGGAGGGGGGACGGGGGGCA
TCTGCCGCGCTGCTGCTGAGGTGCGGAGCGTGGAGGCGGCGGACGAACCT
GGGATGGTGTCGAGTCACGGCTGCTGTCTCAGCTAATGACATGCTGCCGT
TTCCCCTGCCTTGGGACA
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protein sequence of jgi.p|Trimin1|350846

>Trimin1|350846|estExt_Genemark1.C_Ctg_740021 ID=Trimin1|350846|estExt_Genemark1.C_Ctg_740021|Name=jgi.p|Trimin1|350846|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=126bp
MTKCTIWADCSCSTAEGCKCGESCSCGTVSIKALEDAKASACKFGDCPCG
DSCGCGSGCGCGGTVERTEEQWIALAKKSKAKAILFDCSGPGYSTGECPW
SDCSCKASGGECACKESCGCGSTKA*
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mRNA from alignment at Contig_74:217373..219352-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10527 ID=mRNA_10527|Name=jgi.p|Trimin1|350846|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1980bp|location=Sequence derived from alignment at Contig_74:217373..219352- (Tribonema minus UTEX_B_3156 )
GAACGAGAGCTAAACAGGCCGTTTCAATCGCCATCATGACCAAGTGCACC
ATCTGGGCCGATTGCTCATGCTCCACGGCCGAGGGTGAGCCGACGCCGTT
TGCTTGCCGGTGCGGTATCTAGCGCTGCAACATTGTGTGAGGCAGGGACT
GATGGACGACGCCTGCTGTGTGTGCTTGTGCTGCGCAGGCTGCAAGTGCG
GCGAGTCCTGCTCCTGCGGCACCGTCAGCATTAAGGCGCTCGAGGACGCC
AAGGTGCGTGAGTGGAAGAAGTGATCTCGATGAGTGTTGAAGCTCCGTGT
GGAGATCACGACGCGGATATTTACGTGCGCTGCTGTTTATGGATTCTGCT
CTCTTCCTCAGGCCTCAGCCTGCAAGTTCGGCGACTGCCCCTGCGGAGAC
AGCTGCGGCTGCGGGTCGGGTAAGTCACAGCGTGCTATGTTTCTGTGTGC
GCTTCAGCTGTTGGCGCAGTTTAACTTGACTGATGTGCTCCTGTTTCACC
ACAGGCTGCGGCTGCGGCGGCACCGTGGAGCGCACCGAGGAGCAGTGGAT
CGCTCTGGCGAAGAAGTCTAAGGCCAAGGCAAGTCGTTGCCGTTGGTTGC
GATTCGATTTCTTTTTTTGCACGCCGGCAACTTATTCGATCCGGACGCGG
GACGCACCCACTACACTTGTGGGATACGGGACGCACGCATTATCTGTCAA
CATTCAGATCGCTTTTCTGGAGGGGCTCTGTCGACCTCATTCTCGTCGTT
GTTGGTCTGGAGCCCGTCATAGTTGCTGGACGGGACTTGACGCGGTATCT
AGAACCTCAGCAGGCTTTTGGAACCTCCATGTGCCCCCTCAGAGTGTAGC
TGCATCTCGAGTTATCCCAGCCACTGCTCCGCATCAGACAGCCATGAGAT
TTCAAGTCTTTATGTTGTGGCTCCACACAGCAGACATTCGCACTGCAGCC
ATGTGCTTGCACCTCACAACGCTGTGAAGAATGCCTCGCTGAATTCGTCA
ACATCGACAGTGGCTGTCTAGCCTGTCCCATCCCACTGTGCGGCTTTCTG
GTATTTGAACGTGTTGGCGCCTCCTCGGGTTTTGCGTTGTGTACGCAGTA
AGCTCGGTCAGTCAGGCCATACTCTTCTACCCTGATACTTGTTTTTGCAA
AGGTTTTTCTCATTATCTACCACTGTTATGTGCAGTCCTGTTTGACTGCT
CCGGTCCCGGGTACTCAGTAAGAGGTGCTTGACACAGCAATGTAGCATTA
CGCCCACCACTGTCTCGTTTCTGTCCAGTCTTGTTGGCGCCTCGCAAGTC
AACCGTGCTCATTCTTGTTGCCCGCAGCAACACCTACTCAGCCTCTCATG
CCAGTGGCCTCGTGTAACTTTGCCTGCCGCGCGTGCGCCAGCACGACCTT
GTTACAGTCTCACTGCGGCCCACTGCGGCAGCGCGAGCATACGCCCTGAA
CCAGACAACAAGATCATGTGCTGCTGCTCGCTGACACATGTTAGCAATTG
CTCGCGGCTGAGCGCGCCAGTCGTCCGTTGTCCTGACACCCTCCCTTGCT
GCTGCTGCTGCTGCTGCGTGCGCGCGCAGACGGGGGAGTGCCCCTGGAGC
GACTGCTCCTGCAAGGCGTCCGGCGGCGAGTGCGCGTGCAAGGAGTCGTG
CGGCTGCGGCAGCACCAAGGCCTGAGCGCTGCCTCCGCATCTGAGCGCTG
ACGCGACACTCCCTTTTTCCTCTGTAGACGACTAGCAATCTCCTGTCGCG
CCACTGGCGTCCGCTCGGCCTGAAGGGCCACGGCACACAGGGGGCCGCAG
CCGAGAGAGAGTAACTGTGCGTAGTTCATGTGTGTGTAAGTTTGGAGGGG
GGACGGGGGGCATCTGCCGCGCTGCTGCTGAGGTGCGGAGCGTGGAGGCG
GCGGACGAACCTGGGATGGTGTCGAGTCACGGCTGCTGTCTCAGCTAATG
ACATGCTGCCGTTTCCCCTGCCTTGGGACA
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Coding sequence (CDS) from alignment at Contig_74:217373..219352-

>mRNA_10527 ID=mRNA_10527|Name=jgi.p|Trimin1|350846|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=378bp|location=Sequence derived from alignment at Contig_74:217373..219352- (Tribonema minus UTEX_B_3156 )
ATGACCAAGTGCACCATCTGGGCCGATTGCTCATGCTCCACGGCCGAGGG
CTGCAAGTGCGGCGAGTCCTGCTCCTGCGGCACCGTCAGCATTAAGGCGC
TCGAGGACGCCAAGGCCTCAGCCTGCAAGTTCGGCGACTGCCCCTGCGGA
GACAGCTGCGGCTGCGGGTCGGGCTGCGGCTGCGGCGGCACCGTGGAGCG
CACCGAGGAGCAGTGGATCGCTCTGGCGAAGAAGTCTAAGGCCAAGGCAA
TCCTGTTTGACTGCTCCGGTCCCGGGTACTCAACGGGGGAGTGCCCCTGG
AGCGACTGCTCCTGCAAGGCGTCCGGCGGCGAGTGCGCGTGCAAGGAGTC
GTGCGGCTGCGGCAGCACCAAGGCCTGA
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