mRNA_10574 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151919
Unique NamemRNA_10574
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A835YM88_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM88_9STRA)

HSP 1 Score: 147 bits (372), Expect = 7.310e-45
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1
Query:    1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSKPRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
            NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSKPRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT
Sbjct:    1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSKPRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 82          
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A089VHI2_9STRA (ATP synthase subunit b', chloroplastic n=2 Tax=Rhizosolenia TaxID=3004 RepID=A0A089VHI2_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.650e-17
Identity = 49/85 (57.65%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYK---SKPRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
            N ILY+PLL VI +RN+YI  NLA AS IL+Q+N L  +Y+   SK RKEAQLEI+  QK+HK ILETE   SQK ID     +T
Sbjct:   41 NIILYSPLLAVITERNEYILNNLAKASEILAQANDLTAEYEQELSKVRKEAQLEITNSQKIHKEILETELIISQKYIDNLLDNVT 125          
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A023HC60_9STRA (ATP synthase subunit b', chloroplastic n=2 Tax=Coscinodiscus TaxID=33641 RepID=A0A023HC60_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.860e-16
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSK---PRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
            N ILY+PLL+VI +RN+YI  NLA AS ILS++N+L  QY+ +    RKEAQLEI+  QK+HK ILE E   SQK ID     IT
Sbjct:   41 NIILYSPLLSVITERNEYILNNLAKASEILSEANKLTAQYEQELTSVRKEAQLEITNSQKIHKEILEIELNISQKYIDNLLDTIT 125          
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A0S0GJT6_COSCS (ATP synthase CF0 B' chain subunit II n=27 Tax=Laminariales TaxID=2886 RepID=A0A0S0GJT6_COSCS)

HSP 1 Score: 77.8 bits (190), Expect = 2.620e-16
Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYK---SKPRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
            NFILYTPLL+ I++RN YI K+L  A+S+L++SNQL  +Y+   SK RK A+L++ T QKL+K ILE + KSSQ  ID+F ++ T
Sbjct:   41 NFILYTPLLDTIDERNLYIKKSLDEATSVLTKSNQLNVKYEAKTSKARKAAKLDLLTYQKLYKDILEEKMKSSQLFIDKFLIETT 125          
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A023HB42_LITUN (ATP synthase subunit b', chloroplastic n=1 Tax=Lithodesmium undulatum TaxID=59812 RepID=A0A023HB42_LITUN)

HSP 1 Score: 76.6 bits (187), Expect = 7.400e-16
Identity = 47/85 (55.29%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSK---PRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
            N ILY PLL +I +R +YI  NLA AS ILSQ+N+L  QY+ +    RKEAQLEI+  QK+HK ILE E   SQK ID     IT
Sbjct:   41 NIILYNPLLTIIEERKEYILNNLAKASKILSQANELTAQYEQELNSVRKEAQLEITNSQKIHKEILEIELNISQKYIDNLLDNIT 125          
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A8A6KMM1_9STRA (ATP synthase subunit b', chloroplastic n=1 Tax=Coscinodiscus granii TaxID=265552 RepID=A0A8A6KMM1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.050e-15
Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSK---PRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
            N ILY PLLN+I +RN+YI  NLA AS  L+++NQL  QY+ +    RKEAQLEI+  QK+HK IL+ E   SQK ID     IT
Sbjct:   41 NIILYNPLLNIITERNEYILNNLAKASKTLAEANQLTAQYEQELNSVRKEAQLEITNSQKIHKEILDIELTISQKYIDNLLDTIT 125          
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A2U9NNX9_9STRA (ATP synthase subunit b', chloroplastic n=1 Tax=Guinardia striata TaxID=1514137 RepID=A0A2U9NNX9_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.050e-15
Identity = 47/85 (55.29%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSK---PRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
            N +LY+PLL VI +RN+YI  NLA AS IL+Q+N+L  QY+ +    RKEAQLEI+  QK+HK ILE E   SQK ID     IT
Sbjct:   41 NTVLYSPLLEVIAERNEYILNNLAKASEILAQANELTAQYEQELNSVRKEAQLEITNSQKIHKEILEIELNISQKYIDNLLDTIT 125          
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A089VPZ1_CERBC (ATP synthase subunit b', chloroplastic n=11 Tax=Bacillariophyta TaxID=2836 RepID=A0A089VPZ1_CERBC)

HSP 1 Score: 75.9 bits (185), Expect = 1.480e-15
Identity = 47/85 (55.29%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSK---PRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
            N +LY+PLL +I++R +YI  NLA AS ILSQ+N+L TQY+ +    RKEAQLEI+  QK+HK ILE E   SQK ID     IT
Sbjct:   41 NALLYSPLLAIISERKEYILGNLAKASEILSQANELTTQYEQELDSVRKEAQLEITNSQKIHKEILEIELNISQKYIDNLLDTIT 125          
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A8F0FAP4_9PHAE (CF0 subunit II n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAP4_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.090e-15
Identity = 45/85 (52.94%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYK---SKPRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
            NFILYTPLL+ I++RN YI  +L  A+++L++SNQL T+Y+   SK RK A+L++ T QKL+K IL+ + KSSQ  ID+F V+ T
Sbjct:   41 NFILYTPLLDTIDERNIYIKTSLEEATNVLAKSNQLNTKYEKKASKARKAAKLDLITYQKLYKDILDEKMKSSQIFIDDFLVETT 125          
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Match: A0A2U9NP93_9STRA (ATP synthase subunit b', chloroplastic n=1 Tax=Eunotogramma sp. TaxID=2219035 RepID=A0A2U9NP93_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.090e-15
Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    1 NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSK---PRKEAQLEISTLQKLHKSILETEAKSSQKVIDEFFVKIT 246
            N ILY+PLL +I +R +YI  NLA AS IL+Q+N+L  QY+ +    RKEAQLEI+  QK+HK ILE E   SQK ID     IT
Sbjct:   41 NVILYSPLLTIIEERKEYILSNLAKASEILAQANELTAQYEEELDTVRKEAQLEITNSQKIHKEILEIELNISQKYIDNLLETIT 125          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151919 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YM88_9STRA7.310e-45100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A089VHI2_9STRA4.650e-1757.65ATP synthase subunit b', chloroplastic n=2 Tax=Rhi... [more]
A0A023HC60_9STRA1.860e-1656.47ATP synthase subunit b', chloroplastic n=2 Tax=Cos... [more]
A0A0S0GJT6_COSCS2.620e-1654.12ATP synthase CF0 B' chain subunit II n=27 Tax=Lami... [more]
A0A023HB42_LITUN7.400e-1655.29ATP synthase subunit b', chloroplastic n=1 Tax=Lit... [more]
A0A8A6KMM1_9STRA1.050e-1554.12ATP synthase subunit b', chloroplastic n=1 Tax=Cos... [more]
A0A2U9NNX9_9STRA1.050e-1555.29ATP synthase subunit b', chloroplastic n=1 Tax=Gui... [more]
A0A089VPZ1_CERBC1.480e-1555.29ATP synthase subunit b', chloroplastic n=11 Tax=Ba... [more]
A0A8F0FAP4_9PHAE2.090e-1552.94CF0 subunit II n=1 Tax=Desmarestia aculeata TaxID=... [more]
A0A2U9NP93_9STRA2.090e-1554.12ATP synthase subunit b', chloroplastic n=1 Tax=Eun... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_74contigContig_74:558680..558980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151919|gw1.74.83.1
KEGG TC3.A.2.1
BRITEko00000,ko00001,ko00002,ko00194
KEGG ModuleM00157
KEGG Pathwayko00190,ko00195,ko01100,map00190,map00195,map01100
KEGG koko:K02109
Preferred nameatpG
DescriptionATP synthesis coupled proton transport
COG categoryC
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0711@1|root,2S8NX@2759|Eukaryota
Evalue1.11e-14
Seed ortholog2880.D1J794
Hectar predicted targeting categoryother localisation
TranscriptId152241
TrackFilteredModels1
ProteinId151919
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151919gene_10574Tribonema minus UTEX_B_3156 geneContig_74 558680..558980 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10574_1exon_10574_1Tribonema minus UTEX_B_3156 exonContig_74 558680..558809 +
exon_10574_2exon_10574_2Tribonema minus UTEX_B_3156 exonContig_74 558865..558980 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10574CDS_10574Tribonema minus UTEX_B_3156 CDSContig_74 558680..558809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151919Trimin1|151919|gw1.74.83.1Tribonema minus UTEX_B_3156 polypeptideContig_74 558680..558980 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10574 ID=mRNA_10574|Name=jgi.p|Trimin1|151919|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=246bp|location=Sequence derived from alignment at Contig_74:558680..558980+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AATTTCATACTGTATACTCCTCTTTTAAATGTTATTAATGACCGTAATCA
GTACATTAGCAAAAATTTAGCAAATGCTTCAAGCATTTTATCTCAATCAA
ATCAACTAATTACGCAGTACAAAAGTAAACCAAGAAAAGAAGCTCAATTA
GAAATTTCAACACTGCAAAAACTTCATAAAAGTATTTTAGAAACTGAAGC
AAAATCTTCACAAAAAGTTATCGATGAATTTTTTGTGAAAATTACA
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protein sequence of jgi.p|Trimin1|151919

>Trimin1|151919|gw1.74.83.1 ID=Trimin1|151919|gw1.74.83.1|Name=jgi.p|Trimin1|151919|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=82bp
NFILYTPLLNVINDRNQYISKNLANASSILSQSNQLITQYKSKPRKEAQL
EISTLQKLHKSILETEAKSSQKVIDEFFVKIT
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mRNA from alignment at Contig_74:558680..558980+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10574 ID=mRNA_10574|Name=jgi.p|Trimin1|151919|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=301bp|location=Sequence derived from alignment at Contig_74:558680..558980+ (Tribonema minus UTEX_B_3156 )
AATTTCATACTGTATACTCCTCTTTTAAATGTTATTAATGACCGTAATCA GTACATTAGCAAAAATTTAGCAAATGCTTCAAGCATTTTATCTCAATCAA ATCAACTAATTACGCAGTACAAAAGTAAACGTTTTATCTCAATCAAATCA ACTAATTAAGCAGTATGAAAGTGAACTTGCTAAAGCAAGAAAAGAAGCTC AATTAGAAATTTCAACACTGCAAAAACTTCATAAAAGTATTTTAGAAACT GAAGCAAAATCTTCACAAAAAGTTATCGATGAATTTTTTGTGAAAATTAC A
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Coding sequence (CDS) from alignment at Contig_74:558680..558980+

>mRNA_10574 ID=mRNA_10574|Name=jgi.p|Trimin1|151919|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=246bp|location=Sequence derived from alignment at Contig_74:558680..558980+ (Tribonema minus UTEX_B_3156 )
AATTTCATACTGTATACTCCTCTTTTAAATGTTATTAATGACCGTAATCA
GTACATTAGCAAAAATTTAGCAAATGCTTCAAGCATTTTATCTCAATCAA
ATCAACTAATTACGCAGTACAAAAGTAAACCAAGAAAAGAAGCTCAATTA
GAAATTTCAACACTGCAAAAACTTCATAAAAGTATTTTAGAAACTGAAGC
AAAATCTTCACAAAAAGTTATCGATGAATTTTTTGTGAAAATTACA
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