mRNA_15063 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132068
Unique NamemRNA_15063
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A836CN72_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN72_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.430e-50
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1
Query:    1 RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRKGGVPSGEKEPFLLSTDNPVVVAGILVGTGIVYSALT 240
            RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRKGGVPSGEKEPFLLSTDNPVVVAGILVGTGIVYSALT
Sbjct:    1 RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRKGGVPSGEKEPFLLSTDNPVVVAGILVGTGIVYSALT 80          
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A7S1TTG4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTG4_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 5.190e-12
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRKGGVPSGEKEPFLLSTDNPVVVAGILVGTGIV 225
            R  ++ SKR+G IKEYL+E+  D   RG EQW F DWL   K+   +P   K+ F  S DNPV+ AG L+  G+V
Sbjct:   54 RAEVAASKRKGEIKEYLEEIRDDDT-RGAEQWLFNDWLEPAKKDAAIPFLPKKKFN-SGDNPVLAAGALILLGVV 126          
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A7R9U9Y4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9Y4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.940e-9
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    1 RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRKGGVPSGEKEPFLLSTDNPVVVA 198
            R+ +S+SKR+G IKEYL+E+  D  DR +EQW   DWL  ++++  VP   K  F  S DNPV+ A
Sbjct:  125 RLEVSKSKRKGEIKEYLEEIRGDD-DRKVEQWLLNDWLEPKEKEAAVPFLPKTKFN-SGDNPVIAA 188          
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A7S3NQW6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NQW6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.420e-8
Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 1
Query:    1 RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRKGGVPSGEKEPFLLSTDNPVVVAGILV 210
            R+ LSRSK+ G +KEYLD+LE +  +R  E+W   DW+   KRK        +    S DNP++ AG L+
Sbjct:   68 RLELSRSKKAGEVKEYLDKLETNE-ERQFEKWLLNDWINPNKRKEPALPFLPDGKFNSGDNPILAAGALI 136          
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A1Z5J6K2_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6K2_FISSO)

HSP 1 Score: 55.1 bits (131), Expect = 2.330e-7
Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 1
Query:    1 RVALSRSKRRGRIKEYLDELEVDAA----------DRGLEQWFFTDWLRQRKRKGGVPSGEKEPFL 168
            R  L+ SKRRG +K+YLDEL  + A           R  E+W FTDWL QR++K    S +KEP L
Sbjct:   82 RTKLALSKRRGAVKQYLDELSAEEAIVRSEGRSSSSRSFERWLFTDWLVQREKKLTGQSIKKEPAL 147          
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A7S3CFU0_9CHLO (Hypothetical protein n=2 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CFU0_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 4.120e-7
Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    1 RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRKGGVPSGEKEPF 165
            R AL++SKRRG +  YLDELE D + R LE+WF+TDW ++R+ K    +  + P 
Sbjct:  131 RRALAKSKRRGSLSSYLDELEGDDS-RALERWFYTDWRKKRQEKAERDARRRAPI 184          
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A0D2MJ50_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MJ50_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 4.690e-7
Identity = 23/44 (52.27%), Postives = 35/44 (79.55%), Query Frame = 1
Query:    1 RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRK 132
            R  L++ KR G ++ YL+E++ D+ DRGLE+WF+TDWLRQ +R+
Sbjct:   26 RRTLAKEKRAGAVRGYLEEIQNDS-DRGLERWFYTDWLRQLERR 68          
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A8J4BPH2_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BPH2_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 5.840e-7
Identity = 28/63 (44.44%), Postives = 37/63 (58.73%), Query Frame = 1
Query:    1 RVALSRSKRRGRIKEYLDELEVD--AADRGLEQWFFTDWLRQRKRKGGVPSGEKEPFLLSTDN 183
            R AL RSKR G +  YL ELE      +RGLE+WF+TDWLRQR+ +      ++ P    + N
Sbjct:  120 RAALGRSKRLGPLNTYLQELERPDTVQNRGLERWFYTDWLRQREERRRQRDQQRTPTAEDSSN 182          
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A7S4GI34_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GI34_9EUGL)

HSP 1 Score: 50.4 bits (119), Expect = 2.450e-5
Identity = 22/41 (53.66%), Postives = 32/41 (78.05%), Query Frame = 1
Query:    1 RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQR 123
            R AL+  KRRG +KEYL+E+  D + RGLE+WF+ DWL+++
Sbjct:  221 RRALASDKRRGEVKEYLEEIAGDES-RGLERWFYDDWLKRK 260          
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A383V710_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383V710_TETOB)

HSP 1 Score: 49.7 bits (117), Expect = 3.940e-5
Identity = 22/44 (50.00%), Postives = 34/44 (77.27%), Query Frame = 1
Query:    1 RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRK 132
            R  L++ KR G +KEYL EL+ +  D+G+E+WF+TDWL+Q +R+
Sbjct:   97 RRTLAKEKRSGPLKEYLVELQENP-DKGVERWFYTDWLQQLQRR 139          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A836CN72_9STRA1.430e-50100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S1TTG4_9STRA5.190e-1246.67Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U9Y4_9STRA2.940e-946.97Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3NQW6_9STRA1.420e-841.43Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A1Z5J6K2_FISSO2.330e-745.45Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S3CFU0_9CHLO4.120e-747.27Hypothetical protein n=2 Tax=Chloropicon roscoffen... [more]
A0A0D2MJ50_9CHLO4.690e-752.27Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A8J4BPH2_9CHLO5.840e-744.44Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A7S4GI34_9EUGL2.450e-553.66Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A383V710_TETOB3.940e-550.00Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_114contigContig_114:206834..207073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132068|gw1.114.11.1
Max annot lvl2836|Bacillariophyta
EggNOG OGs29N82@1|root,2RVIP@2759|Eukaryota,2XCSX@2836|Bacillariophyta
Evalue3.4e-11
Seed ortholog2850.Phatr35749
Hectar predicted targeting categoryother localisation
TranscriptId132390
TrackFilteredModels1
ProteinId132068
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132068gene_15063Tribonema minus UTEX_B_3156 geneContig_114 206834..207073 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15063_1exon_15063_1Tribonema minus UTEX_B_3156 exonContig_114 206834..207073 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15063CDS_15063Tribonema minus UTEX_B_3156 CDSContig_114 206834..207073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132068Trimin1|132068|gw1.114.11.1Tribonema minus UTEX_B_3156 polypeptideContig_114 206834..207073 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15063 ID=mRNA_15063|Name=jgi.p|Trimin1|132068|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=240bp|location=Sequence derived from alignment at Contig_114:206834..207073- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCGTGGCGCTCTCGCGCAGCAAGCGGCGCGGCCGCATCAAGGAGTACCT
GGACGAACTTGAAGTTGACGCAGCCGACAGGGGGCTCGAGCAGTGGTTCT
TCACGGACTGGCTCAGGCAGCGCAAGCGCAAGGGCGGCGTGCCCAGCGGC
GAAAAAGAGCCGTTTCTGCTGAGCACTGACAACCCTGTGGTGGTCGCTGG
GATTCTGGTCGGGACGGGCATTGTGTATAGCGCTCTCACG
back to top

protein sequence of jgi.p|Trimin1|132068

>Trimin1|132068|gw1.114.11.1 ID=Trimin1|132068|gw1.114.11.1|Name=jgi.p|Trimin1|132068|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=80bp
RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRKGGVPSG
EKEPFLLSTDNPVVVAGILVGTGIVYSALT
back to top

mRNA from alignment at Contig_114:206834..207073-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15063 ID=mRNA_15063|Name=jgi.p|Trimin1|132068|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=240bp|location=Sequence derived from alignment at Contig_114:206834..207073- (Tribonema minus UTEX_B_3156 )
CGCGTGGCGCTCTCGCGCAGCAAGCGGCGCGGCCGCATCAAGGAGTACCT GGACGAACTTGAAGTTGACGCAGCCGACAGGGGGCTCGAGCAGTGGTTCT TCACGGACTGGCTCAGGCAGCGCAAGCGCAAGGGCGGCGTGCCCAGCGGC GAAAAAGAGCCGTTTCTGCTGAGCACTGACAACCCTGTGGTGGTCGCTGG GATTCTGGTCGGGACGGGCATTGTGTATAGCGCTCTCACG
back to top

Coding sequence (CDS) from alignment at Contig_114:206834..207073-

>mRNA_15063 ID=mRNA_15063|Name=jgi.p|Trimin1|132068|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=240bp|location=Sequence derived from alignment at Contig_114:206834..207073- (Tribonema minus UTEX_B_3156 )
CGCGTGGCGCTCTCGCGCAGCAAGCGGCGCGGCCGCATCAAGGAGTACCT
GGACGAACTTGAAGTTGACGCAGCCGACAGGGGGCTCGAGCAGTGGTTCT
TCACGGACTGGCTCAGGCAGCGCAAGCGCAAGGGCGGCGTGCCCAGCGGC
GAAAAAGAGCCGTTTCTGCTGAGCACTGACAACCCTGTGGTGGTCGCTGG
GATTCTGGTCGGGACGGGCATTGTGTATAGCGCTCTCACG
back to top