mRNA_8458 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149398
Unique NamemRNA_8458
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|149398 vs. uniprot
Match: A0A835YQ36_9STRA (TAZ zinc finger-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ36_9STRA)

HSP 1 Score: 157 bits (398), Expect = 4.450e-49
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 RERLLLLRHACQCTAAAGACRATARCAEMKVLWRHVRACAAPDCAVEHCRSSRFVLGHYDGCRDDACGVCAPVR 222
            RERLLLLRHACQCTAAAGACRATARCAEMKVLWRHVRACAAPDCAVEHCRSSRFVLGHYDGCRDDACGVCAPVR
Sbjct:    1 RERLLLLRHACQCTAAAGACRATARCAEMKVLWRHVRACAAPDCAVEHCRSSRFVLGHYDGCRDDACGVCAPVR 74
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BLAST of jgi.p|Trimin1|149398 vs. uniprot
Match: A0A024TS23_9STRA (Histone acetyltransferase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TS23_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 9.320e-10
Identity = 32/74 (43.24%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:    4 ERLLLLRHACQCTAAAGACRATARCAEMKVLWRHVRACAAPD-CAVEHCRSSRFVLGHYDGCRDDACGVCAPVR 222
            +RL+ L+HAC+C      C A   CAEMK LW H++ C   + C+  HC SS++VL HY  C    C VCA + 
Sbjct:  476 QRLMQLKHACECKQ--DKC-AQLACAEMKPLWAHIQTCPENENCSTPHCVSSKYVLAHYQQCMKSTCVVCASLN 546
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149398 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YQ36_9STRA4.450e-49100.00TAZ zinc finger-domain-containing protein (Fragmen... [more]
A0A024TS23_9STRA9.320e-1043.24Histone acetyltransferase n=2 Tax=Aphanomyces inva... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_68contigContig_68:117141..117362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149398|gw1.68.94.1
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
KEGG koko:K04498
EC2.3.1.48
DescriptionTAZ zinc finger, present in p300 and CBP
COG categoryK
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG5076@1|root,KOG1474@2759|Eukaryota,KOG1778@2759|Eukaryota,2XENY@2836|Bacillariophyta
Evalue3.29e-19
Seed ortholog159749.K0SP97
Hectar predicted targeting categorysignal peptide
TranscriptId149720
TrackFilteredModels1
ProteinId149398
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149398gene_8458Tribonema minus UTEX_B_3156 geneContig_68 117141..117362 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8458_1exon_8458_1Tribonema minus UTEX_B_3156 exonContig_68 117141..117362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8458CDS_8458Tribonema minus UTEX_B_3156 CDSContig_68 117141..117362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149398Trimin1|149398|gw1.68.94.1Tribonema minus UTEX_B_3156 polypeptideContig_68 117141..117362 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8458 ID=mRNA_8458|Name=jgi.p|Trimin1|149398|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_68:117141..117362- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCGAGCGCCTGCTGCTGCTGCGGCACGCGTGCCAGTGCACCGCGGCGGC
GGGCGCGTGCCGCGCGACGGCGCGCTGCGCGGAGATGAAGGTGCTTTGGC
GCCACGTGCGCGCGTGCGCAGCGCCGGACTGCGCCGTGGAGCACTGCCGC
AGCTCCAGGTTCGTCCTCGGCCACTACGACGGCTGCAGGGACGACGCGTG
CGGCGTGTGCGCGCCCGTGCGC
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protein sequence of jgi.p|Trimin1|149398

>Trimin1|149398|gw1.68.94.1 ID=Trimin1|149398|gw1.68.94.1|Name=jgi.p|Trimin1|149398|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=74bp
RERLLLLRHACQCTAAAGACRATARCAEMKVLWRHVRACAAPDCAVEHCR
SSRFVLGHYDGCRDDACGVCAPVR
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mRNA from alignment at Contig_68:117141..117362-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8458 ID=mRNA_8458|Name=jgi.p|Trimin1|149398|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_68:117141..117362- (Tribonema minus UTEX_B_3156 )
CGCGAGCGCCTGCTGCTGCTGCGGCACGCGTGCCAGTGCACCGCGGCGGC
GGGCGCGTGCCGCGCGACGGCGCGCTGCGCGGAGATGAAGGTGCTTTGGC
GCCACGTGCGCGCGTGCGCAGCGCCGGACTGCGCCGTGGAGCACTGCCGC
AGCTCCAGGTTCGTCCTCGGCCACTACGACGGCTGCAGGGACGACGCGTG
CGGCGTGTGCGCGCCCGTGCGC
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Coding sequence (CDS) from alignment at Contig_68:117141..117362-

>mRNA_8458 ID=mRNA_8458|Name=jgi.p|Trimin1|149398|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=222bp|location=Sequence derived from alignment at Contig_68:117141..117362- (Tribonema minus UTEX_B_3156 )
CGCGAGCGCCTGCTGCTGCTGCGGCACGCGTGCCAGTGCACCGCGGCGGC
GGGCGCGTGCCGCGCGACGGCGCGCTGCGCGGAGATGAAGGTGCTTTGGC
GCCACGTGCGCGCGTGCGCAGCGCCGGACTGCGCCGTGGAGCACTGCCGC
AGCTCCAGGTTCGTCCTCGGCCACTACGACGGCTGCAGGGACGACGCGTG
CGGCGTGTGCGCGCCCGTGCGC
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