mRNA_10343 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169851
Unique NamemRNA_10343
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|169851 vs. uniprot
Match: A0A836CAB2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAB2_9STRA)

HSP 1 Score: 318 bits (814), Expect = 2.230e-110
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 
Query:    1 MTGSWGSSRRVLTKFCKQHAPPGTRSLYRSCEAPGCTTHAYYGYVSTGVKRSCARHKEDGMVFIERPRCSTDGCNRYPLYGASQIGGTHCSDHIGDIIGTPIYFDQECNVRGCKRVASWGSTAAPYVLTHCETHKLPDAVPL 426
            MTGSWGSSRRVLTKFCKQHAPPGTRSLYRSCEAPGCTTHAYYGYVSTGVKRSCARHKEDGMVFIERPRCSTDGCNRYPLYGASQIGGTHCSDHIGDIIGTPIYFDQECNVRGCKRVASWGSTAAPYVLTHCETHKLPDAVPL
Sbjct:    1 MTGSWGSSRRVLTKFCKQHAPPGTRSLYRSCEAPGCTTHAYYGYVSTGVKRSCARHKEDGMVFIERPRCSTDGCNRYPLYGASQIGGTHCSDHIGDIIGTPIYFDQECNVRGCKRVASWGSTAAPYVLTHCETHKLPDAVPL 142
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169851 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CAB2_9STRA2.230e-110100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_67contigContig_67:68469..68894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169851|e_gw1.67.134.1
Hectar predicted targeting categoryother localisation
TranscriptId170173
TrackFilteredModels1
ProteinId169851
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169851gene_10343Tribonema minus UTEX_B_3156 geneContig_67 68469..68894 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10343_1exon_10343_1Tribonema minus UTEX_B_3156 exonContig_67 68469..68894 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10343CDS_10343Tribonema minus UTEX_B_3156 CDSContig_67 68469..68894 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169851Trimin1|169851|e_gw1.67.134.1Tribonema minus UTEX_B_3156 polypeptideContig_67 68469..68894 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10343 ID=mRNA_10343|Name=jgi.p|Trimin1|169851|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=426bp|location=Sequence derived from alignment at Contig_67:68469..68894- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGGAAGCTGGGGCTCAAGTCGCCGAGTTCTAACCAAATTCTGCAA
GCAGCATGCCCCGCCCGGAACAAGGAGCTTGTACCGGTCCTGTGAGGCTC
CAGGCTGCACCACGCATGCGTATTACGGTTACGTTAGCACAGGCGTCAAA
AGGTCTTGTGCTCGGCACAAGGAAGATGGAATGGTTTTTATCGAGCGGCC
CCGGTGCTCAACGGATGGCTGCAACAGGTATCCCCTGTATGGTGCATCCC
AGATAGGTGGCACGCACTGCAGTGACCACATCGGTGACATCATCGGCACA
CCCATCTACTTCGATCAGGAGTGCAACGTGCGCGGCTGCAAACGCGTGGC
GTCCTGGGGCAGCACGGCTGCACCCTACGTTCTTACACACTGCGAGACTC
ACAAGCTGCCGGATGCCGTTCCTCTC
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protein sequence of jgi.p|Trimin1|169851

>Trimin1|169851|e_gw1.67.134.1 ID=Trimin1|169851|e_gw1.67.134.1|Name=jgi.p|Trimin1|169851|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=142bp
MTGSWGSSRRVLTKFCKQHAPPGTRSLYRSCEAPGCTTHAYYGYVSTGVK
RSCARHKEDGMVFIERPRCSTDGCNRYPLYGASQIGGTHCSDHIGDIIGT
PIYFDQECNVRGCKRVASWGSTAAPYVLTHCETHKLPDAVPL
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mRNA from alignment at Contig_67:68469..68894-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10343 ID=mRNA_10343|Name=jgi.p|Trimin1|169851|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=426bp|location=Sequence derived from alignment at Contig_67:68469..68894- (Tribonema minus UTEX_B_3156 )
ATGACGGGAAGCTGGGGCTCAAGTCGCCGAGTTCTAACCAAATTCTGCAA
GCAGCATGCCCCGCCCGGAACAAGGAGCTTGTACCGGTCCTGTGAGGCTC
CAGGCTGCACCACGCATGCGTATTACGGTTACGTTAGCACAGGCGTCAAA
AGGTCTTGTGCTCGGCACAAGGAAGATGGAATGGTTTTTATCGAGCGGCC
CCGGTGCTCAACGGATGGCTGCAACAGGTATCCCCTGTATGGTGCATCCC
AGATAGGTGGCACGCACTGCAGTGACCACATCGGTGACATCATCGGCACA
CCCATCTACTTCGATCAGGAGTGCAACGTGCGCGGCTGCAAACGCGTGGC
GTCCTGGGGCAGCACGGCTGCACCCTACGTTCTTACACACTGCGAGACTC
ACAAGCTGCCGGATGCCGTTCCTCTC
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Coding sequence (CDS) from alignment at Contig_67:68469..68894-

>mRNA_10343 ID=mRNA_10343|Name=jgi.p|Trimin1|169851|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=426bp|location=Sequence derived from alignment at Contig_67:68469..68894- (Tribonema minus UTEX_B_3156 )
ATGACGGGAAGCTGGGGCTCAAGTCGCCGAGTTCTAACCAAATTCTGCAA
GCAGCATGCCCCGCCCGGAACAAGGAGCTTGTACCGGTCCTGTGAGGCTC
CAGGCTGCACCACGCATGCGTATTACGGTTACGTTAGCACAGGCGTCAAA
AGGTCTTGTGCTCGGCACAAGGAAGATGGAATGGTTTTTATCGAGCGGCC
CCGGTGCTCAACGGATGGCTGCAACAGGTATCCCCTGTATGGTGCATCCC
AGATAGGTGGCACGCACTGCAGTGACCACATCGGTGACATCATCGGCACA
CCCATCTACTTCGATCAGGAGTGCAACGTGCGCGGCTGCAAACGCGTGGC
GTCCTGGGGCAGCACGGCTGCACCCTACGTTCTTACACACTGCGAGACTC
ACAAGCTGCCGGATGCCGTTCCTCTC
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