Trimin1|350531|estExt_Genemark1.C_Ctg_650066 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350531
Unique NameTrimin1|350531|estExt_Genemark1.C_Ctg_650066
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length1319
Homology
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BLAST of jgi.p|Trimin1|350531 vs. uniprot
Match: A0A835YQP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQP8_9STRA)

HSP 1 Score: 1940 bits (5026), Expect = 0.000e+0
Identity = 1318/1318 (100.00%), Postives = 1318/1318 (100.00%), Query Frame = 0 
Query:    1 MLRLSWKKTRRSSRSRDVQASRGVRSTTLALGLLLAAQHLSPTVGLLYSPALAVRSCQGVVTWLGCTAHATNAGAPHQQGAELQQATVSGPAAGAXXXXXXXXXXXXXXXXXXXXXXXXASGALQQGCVRDSLRNRRVAATAGRAVKRGASLRLAVGADRWAGTGGAARAVRRGGGGGQAVAPAVAEQWDAPQPQPAPTCATAPFARCGSDAASASRDCATRGRAAKRRCIDAHAHRGHDSDDGETAVYAHRPWRKQRXXXXXXXXXXXXXXXXXXXXXEMRADDAAAVPRAPEAVRLPSQKAIVEQLTALSDAVPMITDAQCVRVQKDGGLSACPCLPLRRIRSGVGASLCGAAASARLNACGLPLPWQSLAPKSPPCDSSARTPSSRDARRAATVLSDAIAAGVPPNAAMYNAAITVAARASXXXXXXXXXXARRLPAAHALLRDMRQRGLEPTLITYNAMLDAAAXXXXXXXXXXXXXXXXXXXXXXLHTDDTTPSRCTPAPDAADALHLLADMQERRLRPDNISYATAIAACGNDGMTEDALRLLDEAHTAGLAPGTYAHNAATDALIRAERWQEALLLQEHMPTITAPVLHCAHVVVGDACAARSRQCHLPKRQQTRHNRCCIRWEDALLLQERMTQRKVPWDAATWSLRVLALHSSGDHAAVLGVLNEMEERSVXXXXXXXXXXXXXXXXXXXXXXXXXXECTTXXXXXXXXXXXXXXXXXXXXXXXXXESRGAPRVLGXXXXXXXXXXXXXXXEVPMWSLRALALAXXXXXXXXXXXXXXXXXEGMMLNSRGYGAAVSSCRHAGDWRRALSLLERRRRXXXXXXXXTYAQAARAATGGACCRCWSRAGSQARRHXXXXXXXXXXXXXLELLLLALIATRLAARALSLAADGHGALLIIPCSRYPPALTLPGDWRRALSLLERRRLAGAATSAATYAQAVHAVCAAGELDRGLGLLNEMRKAHMRARADPMERREVPGVRSADRRRTRSQAQALSTKLAKKLRDRLRKLEAEAESTPLREMFTPLLAAAGAAGQWEVACSLLRRVEAESGRAPRKEHYLCVMEEHCLCATEAARKWGXXXXXXXXXXXXXXXXXXXXTVACYECAVRACGAARQFHAVTELLQASAAAAEHLGKAAAVPPAVLQAALQAFIAGEQPQHSMAQGLAARLSVHCAAHTRRKQRSATICAAASITPLAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSRFVRPSPSAFAAVVKALVREERLQCAAQLVDAARAAPWWRLRGDVVLQALPPAATAAARGDAEEELQVEGVTPAR 1318
            MLRLSWKKTRRSSRSRDVQASRGVRSTTLALGLLLAAQHLSPTVGLLYSPALAVRSCQGVVTWLGCTAHATNAGAPHQQGAELQQATVSGPAAGAXXXXXXXXXXXXXXXXXXXXXXXXASGALQQGCVRDSLRNRRVAATAGRAVKRGASLRLAVGADRWAGTGGAARAVRRGGGGGQAVAPAVAEQWDAPQPQPAPTCATAPFARCGSDAASASRDCATRGRAAKRRCIDAHAHRGHDSDDGETAVYAHRPWRKQRXXXXXXXXXXXXXXXXXXXXXEMRADDAAAVPRAPEAVRLPSQKAIVEQLTALSDAVPMITDAQCVRVQKDGGLSACPCLPLRRIRSGVGASLCGAAASARLNACGLPLPWQSLAPKSPPCDSSARTPSSRDARRAATVLSDAIAAGVPPNAAMYNAAITVAARASXXXXXXXXXXARRLPAAHALLRDMRQRGLEPTLITYNAMLDAAAXXXXXXXXXXXXXXXXXXXXXXLHTDDTTPSRCTPAPDAADALHLLADMQERRLRPDNISYATAIAACGNDGMTEDALRLLDEAHTAGLAPGTYAHNAATDALIRAERWQEALLLQEHMPTITAPVLHCAHVVVGDACAARSRQCHLPKRQQTRHNRCCIRWEDALLLQERMTQRKVPWDAATWSLRVLALHSSGDHAAVLGVLNEMEERSVXXXXXXXXXXXXXXXXXXXXXXXXXXECTTXXXXXXXXXXXXXXXXXXXXXXXXXESRGAPRVLGXXXXXXXXXXXXXXXEVPMWSLRALALAXXXXXXXXXXXXXXXXXEGMMLNSRGYGAAVSSCRHAGDWRRALSLLERRRRXXXXXXXXTYAQAARAATGGACCRCWSRAGSQARRHXXXXXXXXXXXXXLELLLLALIATRLAARALSLAADGHGALLIIPCSRYPPALTLPGDWRRALSLLERRRLAGAATSAATYAQAVHAVCAAGELDRGLGLLNEMRKAHMRARADPMERREVPGVRSADRRRTRSQAQALSTKLAKKLRDRLRKLEAEAESTPLREMFTPLLAAAGAAGQWEVACSLLRRVEAESGRAPRKEHYLCVMEEHCLCATEAARKWGXXXXXXXXXXXXXXXXXXXXTVACYECAVRACGAARQFHAVTELLQASAAAAEHLGKAAAVPPAVLQAALQAFIAGEQPQHSMAQGLAARLSVHCAAHTRRKQRSATICAAASITPLAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSRFVRPSPSAFAAVVKALVREERLQCAAQLVDAARAAPWWRLRGDVVLQALPPAATAAARGDAEEELQVEGVTPAR
Sbjct:    1 MLRLSWKKTRRSSRSRDVQASRGVRSTTLALGLLLAAQHLSPTVGLLYSPALAVRSCQGVVTWLGCTAHATNAGAPHQQGAELQQATVSGPAAGAXXXXXXXXXXXXXXXXXXXXXXXXASGALQQGCVRDSLRNRRVAATAGRAVKRGASLRLAVGADRWAGTGGAARAVRRGGGGGQAVAPAVAEQWDAPQPQPAPTCATAPFARCGSDAASASRDCATRGRAAKRRCIDAHAHRGHDSDDGETAVYAHRPWRKQRXXXXXXXXXXXXXXXXXXXXXEMRADDAAAVPRAPEAVRLPSQKAIVEQLTALSDAVPMITDAQCVRVQKDGGLSACPCLPLRRIRSGVGASLCGAAASARLNACGLPLPWQSLAPKSPPCDSSARTPSSRDARRAATVLSDAIAAGVPPNAAMYNAAITVAARASXXXXXXXXXXARRLPAAHALLRDMRQRGLEPTLITYNAMLDAAAXXXXXXXXXXXXXXXXXXXXXXLHTDDTTPSRCTPAPDAADALHLLADMQERRLRPDNISYATAIAACGNDGMTEDALRLLDEAHTAGLAPGTYAHNAATDALIRAERWQEALLLQEHMPTITAPVLHCAHVVVGDACAARSRQCHLPKRQQTRHNRCCIRWEDALLLQERMTQRKVPWDAATWSLRVLALHSSGDHAAVLGVLNEMEERSVXXXXXXXXXXXXXXXXXXXXXXXXXXECTTXXXXXXXXXXXXXXXXXXXXXXXXXESRGAPRVLGXXXXXXXXXXXXXXXEVPMWSLRALALAXXXXXXXXXXXXXXXXXEGMMLNSRGYGAAVSSCRHAGDWRRALSLLERRRRXXXXXXXXTYAQAARAATGGACCRCWSRAGSQARRHXXXXXXXXXXXXXLELLLLALIATRLAARALSLAADGHGALLIIPCSRYPPALTLPGDWRRALSLLERRRLAGAATSAATYAQAVHAVCAAGELDRGLGLLNEMRKAHMRARADPMERREVPGVRSADRRRTRSQAQALSTKLAKKLRDRLRKLEAEAESTPLREMFTPLLAAAGAAGQWEVACSLLRRVEAESGRAPRKEHYLCVMEEHCLCATEAARKWGXXXXXXXXXXXXXXXXXXXXTVACYECAVRACGAARQFHAVTELLQASAAAAEHLGKAAAVPPAVLQAALQAFIAGEQPQHSMAQGLAARLSVHCAAHTRRKQRSATICAAASITPLAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSRFVRPSPSAFAAVVKALVREERLQCAAQLVDAARAAPWWRLRGDVVLQALPPAATAAARGDAEEELQVEGVTPAR 1318
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350531 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YQP8_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 998..1018
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 242..294
NoneNo IPR availablePANTHERPTHR47932ATPASE EXPRESSION PROTEIN 3coord: 424..587
coord: 918..1274
coord: 391..471
coord: 631..1128
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 528..556
e-value: 0.27
score: 11.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 527..560
e-value: 4.4E-4
score: 18.2
coord: 424..456
e-value: 0.0027
score: 15.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 424..468
e-value: 9.5E-8
score: 32.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 421..455
score: 9.328124
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 938..972
score: 8.560833
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 525..559
score: 9.930995
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 381..468
e-value: 1.5E-13
score: 52.8
coord: 469..609
e-value: 4.3E-21
score: 77.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 913..1172
e-value: 1.9E-17
score: 65.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 744..872
e-value: 9.6E-9
score: 37.1
coord: 610..743
e-value: 2.6E-8
score: 35.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_65contigContig_65:655390..671237 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350531mRNA_12696Tribonema minus UTEX_B_3156 mRNAContig_65 655390..671307 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350531|estExt_Genemark1.C_Ctg_650066 ID=Trimin1|350531|estExt_Genemark1.C_Ctg_650066|Name=jgi.p|Trimin1|350531|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1319bp
MLRLSWKKTRRSSRSRDVQASRGVRSTTLALGLLLAAQHLSPTVGLLYSP
ALAVRSCQGVVTWLGCTAHATNAGAPHQQGAELQQATVSGPAAGAAAAAA
APVAAAATAAANAAAAMAGASGALQQGCVRDSLRNRRVAATAGRAVKRGA
SLRLAVGADRWAGTGGAARAVRRGGGGGQAVAPAVAEQWDAPQPQPAPTC
ATAPFARCGSDAASASRDCATRGRAAKRRCIDAHAHRGHDSDDGETAVYA
HRPWRKQRRRSSGCGGGGGGSGGGSSGGGEMRADDAAAVPRAPEAVRLPS
QKAIVEQLTALSDAVPMITDAQCVRVQKDGGLSACPCLPLRRIRSGVGAS
LCGAAASARLNACGLPLPWQSLAPKSPPCDSSARTPSSRDARRAATVLSD
AIAAGVPPNAAMYNAAITVAARASYNAAITVAAQARRLPAAHALLRDMRQ
RGLEPTLITYNAMLDAAAKRGLEPTLITYNAMLNAAAKRDLHTDDTTPSR
CTPAPDAADALHLLADMQERRLRPDNISYATAIAACGNDGMTEDALRLLD
EAHTAGLAPGTYAHNAATDALIRAERWQEALLLQEHMPTITAPVLHCAHV
VVGDACAARSRQCHLPKRQQTRHNRCCIRWEDALLLQERMTQRKVPWDAA
TWSLRVLALHSSGDHAAVLGVLNEMEERSVTWSPRVLALHGSGDHAAVLG
VLNGMEECTTWSLRVLALHGSGDHAAMLAVLNEMEESRGAPRVLGAGDHA
AVLGVLNEMEEVPMWSLRALALAGSGDYATALGVLSDMEEEGMMLNSRGY
GAAVSSCRHAGDWRRALSLLERRRRAGAATSAATYAQAARAATGGACCRC
WSRAGSQARRHDWRRALSLLERRRLELLLLALIATRLAARALSLAADGHG
ALLIIPCSRYPPALTLPGDWRRALSLLERRRLAGAATSAATYAQAVHAVC
AAGELDRGLGLLNEMRKAHMRARADPMERREVPGVRSADRRRTRSQAQAL
STKLAKKLRDRLRKLEAEAESTPLREMFTPLLAAAGAAGQWEVACSLLRR
VEAESGRAPRKEHYLCVMEEHCLCATEAARKWGEWRVVLELLEEMQERHG
LTPTVACYECAVRACGAARQFHAVTELLQASAAAAEHLGKAAAVPPAVLQ
AALQAFIAGEQPQHSMAQGLAARLSVHCAAHTRRKQRSATICAAASITPL
APPAPPRRAARSQLDAAAALLQPPAAAAAAVLPPHAAAAAALSRFVRPSP
SAFAAVVKALVREERLQCAAQLVDAARAAPWWRLRGDVVLQALPPAATAA
ARGDAEEELQVEGVTPAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf