mRNA_12693 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|169564 vs. uniprot
Match: A0A835YM75_9STRA (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM75_9STRA) HSP 1 Score: 362 bits (928), Expect = 6.340e-127 Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1
Query: 1 LRVTSYTNKYGTFQTRTLNGMLPGPLMRMEACSEYSVTLNNRMHGYLPPFPEAPFNSYRDPLVTNMHLHGLHISGSAGGDDMTVEIEPGADHTYLYKIPCDHSGGLHWYHPHHHGSTTLQAGAGAAALLVVEDNPWLEASMPEVYKDIPQVKLTLRCGETGTCALVE 501
LRVTSYTNKYGTFQTRTLNGMLPGPLMRMEACSEYSVTLNNRMHGYLPPFPEAPFNSYRDPLVTNMHLHGLHISGSAGGDDMTVEIEPGADHTYLYKIPCDHSGGLHWYHPHHHGSTTLQAGAGAAALLVVEDNPWLEASMPEVYKDIPQVKLTLRCGETGTCALVE
Sbjct: 1 LRVTSYTNKYGTFQTRTLNGMLPGPLMRMEACSEYSVTLNNRMHGYLPPFPEAPFNSYRDPLVTNMHLHGLHISGSAGGDDMTVEIEPGADHTYLYKIPCDHSGGLHWYHPHHHGSTTLQAGAGAAALLVVEDNPWLEASMPEVYKDIPQVKLTLRCGETGTCALVE 167
BLAST of jgi.p|Trimin1|169564 vs. uniprot
Match: A0A835YN74_9STRA (Cupredoxin (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN74_9STRA) HSP 1 Score: 256 bits (654), Expect = 1.160e-85 Identity = 115/132 (87.12%), Postives = 122/132 (92.42%), Query Frame = 1
Query: 1 LRVTSYTNKYGTFQTRTLNGMLPGPLMRMEACSEYSVTLNNRMHGYLPPFPEAPFNSYRDPLVTNMHLHGLHISGSAGGDDMTVEIEPGADHTYLYKIPCDHSGGLHWYHPHHHGSTTLQAGAGAAALLVVE 396
L+VTSYTN +GTFQTRT NGMLPGPLMRMEAC YSVTLNNRM GYL PFPEAPFNSYRDPLVTNMH HGLH+SG+ GGDDMTVEI+PGAD TY+YKIPCDH+GGLHWYHPHHHGSTTLQAGAGAA LLVVE
Sbjct: 1 LQVTSYTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFPEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 132
BLAST of jgi.p|Trimin1|169564 vs. uniprot
Match: A0A836CMI9_9STRA (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMI9_9STRA) HSP 1 Score: 216 bits (550), Expect = 6.100e-62 Identity = 95/126 (75.40%), Postives = 104/126 (82.54%), Query Frame = 1
Query: 91 ACSEYSVTLNNRMHGYLPPFPEAPFNSYRDPLVTNMHLHGLHISGSAGGDDMTVEIEPGADHTYLYKIPCDHSGGLHWYHPHHHGSTTLQAGAGAAALLVVEDNPWLEASMPEVYKDIPQVKLTLR 468
AC EY VTLNNRM GY PPFPEAPFNSYRDPL TN+H HGLH+SGS GGDD+TV IEPG HT+ YKIPC+HSGGLHWYHPHHHGSTTLQAGAGAA LL+VEDNPWLE MPE + Q L ++
Sbjct: 882 ACGEYRVTLNNRMQGYEPPFPEAPFNSYRDPLRTNLHTHGLHVSGSEGGDDVTVVIEPGESHTFTYKIPCNHSGGLHWYHPHHHGSTTLQAGAGAAGLLLVEDNPWLEGGMPEALAGMRQAFLQIQ 1007
BLAST of jgi.p|Trimin1|169564 vs. uniprot
Match: A0A835Z3E9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3E9_9STRA) HSP 1 Score: 162 bits (409), Expect = 5.490e-43 Identity = 75/159 (47.17%), Postives = 98/159 (61.64%), Query Frame = 1
Query: 16 YTNKYGTFQTRTLNGMLPGPLMRMEACSEYSVTLNNRMHGYLPPFPEAPFNSYRDPLVTNMHLHGLHISGSAGGDDMTVEIEPGADHTYLYKIPCDHSGGLHWYHPHHHGSTTLQAGAGAAALLVVEDNPWLEA--SMPEVYKDIPQVKLTLRCGETGT 486
+TNKYGT +TR NG +PGPLMR++AC Y +TL N + G+ P N + +P TN+H HGLH+SG D++ E+ G Y Y IPCDH+GG H+YH HHHG TLQAG GA LL V+DNP EA S P +Y +P + L+ + T
Sbjct: 705 FTNKYGTTRTRGYNGGIPGPLMRLQACKVYKLTLKNTLSGWADP-TSPTLNQFTNPSTTNLHTHGLHVSGMGNADNVLREVARGESAVYTYAIPCDHAGGTHFYHAHHHGGVTLQAGGGAVGLLRVDDNPTFEAIASRPAIYGSMPTRYVVLQYVDPDT 862
BLAST of jgi.p|Trimin1|169564 vs. uniprot
Match: A0A835YZ52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ52_9STRA) HSP 1 Score: 158 bits (400), Expect = 8.910e-42 Identity = 74/152 (48.68%), Postives = 94/152 (61.84%), Query Frame = 1
Query: 1 LRVTSYTNKYGTFQTRTLNGMLPGPLMRMEACSEYSVTLNNRMHGYLPPFPEAPFNSYRDPLVTNMHLHGLHISGSAGGDDMTVEIEPGADHTYLYKIPCDHSGGLHWYHPHHHGSTTLQAGAGAAALLVVEDNPWLEASM--PEVYKDIPQ 450
L + NK+GT +TR NG +P PLMR+ AC Y +TL N + P N +R+P TN+H HGLH+SG DD E+ PG + Y Y IPCDH+GG H+YHPHHHGS L AGAGA +L V+DNP LEA+ P +Y +PQ
Sbjct: 593 LGAVQFANKWGTTRTRGYNGGVPAPLMRLRACGVYKLTLRNAQQKW--GNPGGALNDFREPATTNLHTHGLHVSGIGNADDTYREVLPGKETVYTYAIPCDHAGGTHFYHPHHHGSVFLSAGAGAVGMLRVDDNPTLEANARRPAIYGRMPQ 742
BLAST of jgi.p|Trimin1|169564 vs. uniprot
Match: A0A835YYP6_9STRA (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP6_9STRA) HSP 1 Score: 154 bits (389), Expect = 1.850e-41 Identity = 73/126 (57.94%), Postives = 80/126 (63.49%), Query Frame = 1
Query: 91 ACSEYSVTLNNRMHGYLPPFPEAPFNSYRDPLVTNMHLHGLHISGSAGGDDMTVEIEPGADHTYLYKIPCDHSGGLHWYHPHHHGSTTLQAGAGAAALLVVEDNPWLEASMPEVYKDIPQVKLTLR 468
AC EY VTLNNRM G PP P P P H DD+TV IEPG HT+ YKIPC+HSGGLHWYHPHHHGSTTLQAGAGAA LL+VEDNPWLE MPE + Q L ++
Sbjct: 364 ACGEYRVTLNNRMQGTSPPSPRPPSTRTVTPAHEPAHARPARQRLGRRRDDVTVVIEPGESHTFTYKIPCNHSGGLHWYHPHHHGSTTLQAGAGAAGLLLVEDNPWLEGGMPEALAGMRQAFLQIQ 489
BLAST of jgi.p|Trimin1|169564 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA) HSP 1 Score: 157 bits (397), Expect = 2.260e-41 Identity = 77/162 (47.53%), Postives = 99/162 (61.11%), Query Frame = 1
Query: 1 LRVTSYTNKYGTFQTRTLNGMLPGPLMRMEACSEYSVTLNNRMHGYLPPFPE----APFNSYRDPLVTNMHLHGLHISGSAGGDDMTVEIEPGADHTYLYKIPCDHSGGLHWYHPHHHGSTTLQAGAGAAALLVVEDN-------PWLEASMPEVYKDIPQV 453
L V + G +TR NGM+PGPLMRM+ C Y +T+ N + G+ P P A NS DPLVTN+H+HGLH+SG A GDD+ IEPG Y Y IPCDH+ G +WYHPHHHGS LQ G GAA +LV+E + P A++PE + I ++
Sbjct: 547 LDVVMLETERGAVRTRAWNGMIPGPLMRMQPCGTYHLTVKNALKGWPAPPPRIAAAAQLNSVHDPLVTNVHVHGLHVSGEAPGDDVFGVIEPGDAAMYTYTIPCDHASGTNWYHPHHHGSVALQTGGGAAGMLVIEPSAREALGTPAEIAALPEQFVVIQEI 708
BLAST of jgi.p|Trimin1|169564 vs. uniprot
Match: A0A835ZH56_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH56_9STRA) HSP 1 Score: 157 bits (396), Expect = 2.980e-41 Identity = 70/141 (49.65%), Postives = 91/141 (64.54%), Query Frame = 1
Query: 31 GTFQTRTLNGMLPGPLMRMEACSEYSVTLNNRMHGYLPPF-PEAPFNSYRDPLVTNMHLHGLHISGSAGGDDMTVEIEPGADHTYLYKIPCDHSGGLHWYHPHHHGSTTLQAGAGAAALLVVEDNPWLEASMPEVYKDIPQ 450
GT +T NG+ PGP+MRM+AC Y +TL N + G+ PEA N DP VTN+HLHG+HISG A GDD+ I G + Y+Y +PCDH+GG +WYHPHHHG LQ+G GA +L+VE NP MP + +P+
Sbjct: 294 GTMRTVGYNGLQPGPIMRMQACGVYHLTLKNTLEGWPEGIGPEAGVNGEHDPTVTNIHLHGMHISGMAPGDDVFAAIAAGEEQEYVYTVPCDHTGGTNWYHPHHHGIVALQSGTGAMGMLIVESNPREAQDMPPEIQMMPE 434
BLAST of jgi.p|Trimin1|169564 vs. uniprot
Match: A0A6H5LB76_9PHAE (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB76_9PHAE) HSP 1 Score: 154 bits (388), Expect = 3.680e-40 Identity = 76/160 (47.50%), Postives = 97/160 (60.62%), Query Frame = 1
Query: 22 NKYGTFQTRTLNGMLPGPLMRMEACSEYSVTLNNRMHGYLPPFPEAPFNSYRDPLVTNMHLHGLHISGSAGGDDMT-VEIEPGADHTYLYKIPCDHSGGLHWYHPHHHGSTTLQAGAGAAALLVVEDN------PWLEASMPEVYKDIPQVKLTLRCGET 480
N +G TR NG +PGP +RMEAC Y +T N + P P +N+ +DP TN+H HGLHISG + DD+ VEI PG HT++Y IPCDH+GG WYHPHHHGST+LQ G GA LVVED P A+MPE+ I ++ L ++
Sbjct: 665 NFWGVTTTRAFNGQIPGPTIRMEACQTYELTYTNNLG---PLNPGGAWNTMKDPNTTNLHTHGLHISGESPADDVLYVEITPGESHTFVYTIPCDHAGGTFWYHPHHHGSTSLQMGGGAMGALVVEDRVDVHGIPDQIANMPELVMVIQEMNPELSTADS 821
BLAST of jgi.p|Trimin1|169564 vs. uniprot
Match: A0A836CIZ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ3_9STRA) HSP 1 Score: 152 bits (385), Expect = 9.180e-40 Identity = 73/158 (46.20%), Postives = 99/158 (62.66%), Query Frame = 1
Query: 7 VTSYTNKYGTFQTRTLNGMLPGPLMRMEACSEYSVTLNNRMHGYLPPFPEAPFNSYRDPLVTNMHLHGLHISGSAGGDDMT-VEIEPGADHTYLYKIPCDHSGGLHWYHPHHHGSTTLQAGAGAAALLVVEDNPWLEASMPEVYKDIPQVKLTLRCGE 477
V YTN YGT +TR N L P +RM+AC +Y +TL N + P N+ RDP TN+H+HGLHISG+ D++ V++ PG H Y Y+IPCDH+ GLH+YH HHHGS ++QAG GA L+V+EDNP E ++P +P+ L + E
Sbjct: 587 VVEYTNSYGTTRTRAFN--LYNPTIRMKACGKYLITLTNDLAAGWGD-PTGAINTLRDPQRTNLHVHGLHISGNGAVDNVVDVQLSPGGGHLYKYEIPCDHASGLHFYHTHHHGSASVQAGGGAVGLIVIEDNPQFEGTLPGWLNGMPERHLLIEVVE 741 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169564 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12693 ID=mRNA_12693|Name=jgi.p|Trimin1|169564|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=504bp|location=Sequence derived from alignment at Contig_65:631477..633213- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TTGCGGGTTACCAGCTACACCAACAAGTACGGGACCTTTCAGACACGCACback to top protein sequence of jgi.p|Trimin1|169564 >Trimin1|169564|e_gw1.65.80.1 ID=Trimin1|169564|e_gw1.65.80.1|Name=jgi.p|Trimin1|169564|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp LRVTSYTNKYGTFQTRTLNGMLPGPLMRMEACSEYSVTLNNRMHGYLPPFback to top mRNA from alignment at Contig_65:631477..633213- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12693 ID=mRNA_12693|Name=jgi.p|Trimin1|169564|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1737bp|location=Sequence derived from alignment at Contig_65:631477..633213- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_65:631477..633213- >mRNA_12693 ID=mRNA_12693|Name=jgi.p|Trimin1|169564|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=504bp|location=Sequence derived from alignment at Contig_65:631477..633213- (Tribonema minus UTEX_B_3156 )back to top |