Trimin1|350483|estExt_Genemark1.C_Ctg_640035 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350483
Unique NameTrimin1|350483|estExt_Genemark1.C_Ctg_640035
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length737
Homology
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: A0A836CA75_9STRA (PHD-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA75_9STRA)

HSP 1 Score: 1187 bits (3072), Expect = 0.000e+0
Identity = 736/736 (100.00%), Postives = 736/736 (100.00%), Query Frame = 0
Query:    1 MLLGGSLPPQSRDLSAQDTQPRAAEALPEPAGAARAAAPAAIPXXXXXXXXXXXXXXXXXXXXXXPTHAAXXPTPALSAQQTASASLPVLEAAAPXXXPAAACALEAPRLVPTSTVEGAPAAVAGPPQEAPPSPLLDRVSQLMAAAQSLAAPAQTGGLAVAXXXXXXXXVQPHRSNGLMGVLPPAATAAALSQCSAAGTLPLAXXXXXXXAAGAPSLLAPVHHCHVRGTLLRLRHAARELLPAEGAGAVAAALDGVEGALTCTPELKDFGENVQAALSAAGGGVWEALQCEFEEAMHALSLQFRAQWRFKRKRGAEAAEXXXXXAGGGLDLINGALPHSGHSPNARSGAADPASTYSSGASTSGSRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCAWRMRRRLPVDGFGMVPGNGRGWAPPEPEPGARPFQDMELDDRACCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVNRLLVNVTLLLGCTSCVPGVVCVTQVLHEDTVVEPMVFNKPPAPARTTMCFDQRGCLRAAAPFDIQIYETYCAAHQHCRADAGAVVAALRRACVHATPHALLAKNAALVALVEKKLAAPPGDPNAYPDFVAFERHIRAVAAEAELWDDVTDILQALRKHMTS 736
            MLLGGSLPPQSRDLSAQDTQPRAAEALPEPAGAARAAAPAAIPXXXXXXXXXXXXXXXXXXXXXXPTHAAXXPTPALSAQQTASASLPVLEAAAPXXXPAAACALEAPRLVPTSTVEGAPAAVAGPPQEAPPSPLLDRVSQLMAAAQSLAAPAQTGGLAVAXXXXXXXXVQPHRSNGLMGVLPPAATAAALSQCSAAGTLPLAXXXXXXXAAGAPSLLAPVHHCHVRGTLLRLRHAARELLPAEGAGAVAAALDGVEGALTCTPELKDFGENVQAALSAAGGGVWEALQCEFEEAMHALSLQFRAQWRFKRKRGAEAAEXXXXXAGGGLDLINGALPHSGHSPNARSGAADPASTYSSGASTSGSRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCAWRMRRRLPVDGFGMVPGNGRGWAPPEPEPGARPFQDMELDDRACCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVNRLLVNVTLLLGCTSCVPGVVCVTQVLHEDTVVEPMVFNKPPAPARTTMCFDQRGCLRAAAPFDIQIYETYCAAHQHCRADAGAVVAALRRACVHATPHALLAKNAALVALVEKKLAAPPGDPNAYPDFVAFERHIRAVAAEAELWDDVTDILQALRKHMTS
Sbjct:    1 MLLGGSLPPQSRDLSAQDTQPRAAEALPEPAGAARAAAPAAIPXXXXXXXXXXXXXXXXXXXXXXPTHAAXXPTPALSAQQTASASLPVLEAAAPXXXPAAACALEAPRLVPTSTVEGAPAAVAGPPQEAPPSPLLDRVSQLMAAAQSLAAPAQTGGLAVAXXXXXXXXVQPHRSNGLMGVLPPAATAAALSQCSAAGTLPLAXXXXXXXAAGAPSLLAPVHHCHVRGTLLRLRHAARELLPAEGAGAVAAALDGVEGALTCTPELKDFGENVQAALSAAGGGVWEALQCEFEEAMHALSLQFRAQWRFKRKRGAEAAEXXXXXAGGGLDLINGALPHSGHSPNARSGAADPASTYSSGASTSGSRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCAWRMRRRLPVDGFGMVPGNGRGWAPPEPEPGARPFQDMELDDRACCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVNRLLVNVTLLLGCTSCVPGVVCVTQVLHEDTVVEPMVFNKPPAPARTTMCFDQRGCLRAAAPFDIQIYETYCAAHQHCRADAGAVVAALRRACVHATPHALLAKNAALVALVEKKLAAPPGDPNAYPDFVAFERHIRAVAAEAELWDDVTDILQALRKHMTS 736          
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: A0A2P6NNA0_9EUKA (Peregrin-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NNA0_9EUKA)

HSP 1 Score: 87.4 bits (215), Expect = 4.980e-14
Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = 0
Query:  464 DDRACCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVNRLLVNV 581
            +D  C  C +G S + + +V CDGC +AVH++CYG+ ++PEG+  W C PC  +L               +P CALC Q  GA KP         + +WAHV+CA W P +  L ++V
Sbjct:  171 EDVLCSVCGNGDSDETNMIVFCDGCDIAVHQQCYGVSSIPEGE--WLCEPCELKL---------------QPNCALCKQSGGAFKPTT-------EKKWAHVVCALWIPGMGILDLSV 264          
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: A0A8C4Z4D3_GADMO (Jade family PHD finger 1 n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4Z4D3_GADMO)

HSP 1 Score: 83.2 bits (204), Expect = 9.760e-13
Identity = 46/112 (41.07%), Postives = 55/112 (49.11%), Query Frame = 0
Query:  464 DDRACCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVN 575
            DD  C  C S    D++ +V CD C + VH+ CYGIQ VPEG   W C  C   L+               PRC LC QR GAMKP           +WAHV CA W P+V+
Sbjct:  195 DDVVCEVCHSPDGEDNNEMVFCDKCNICVHQACYGIQKVPEGS--WLCRTCALGLS---------------PRCQLCPQRGGAMKPTRSG------TKWAHVSCALWIPEVS 283          
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: R1DEX7_EMIHU (Uncharacterized protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DEX7_EMIHU)

HSP 1 Score: 76.3 bits (186), Expect = 1.000e-12
Identity = 43/114 (37.72%), Postives = 57/114 (50.00%), Query Frame = 0
Query:  467 ACC-ACSSGHSHDDDALVGCDGCGVAVHERCYGIQA--VPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVNRL 577
            ACC  C  G   +D+ ++ CD C +AVH+ CYG  A  +PEGD PW C  C F  +KRA           +  C LC ++ GAMK            +WAH+ CA W P+   L
Sbjct:    5 ACCNVCGEGDWEEDNKIIFCDSCDLAVHQVCYGAGARVIPEGDAPWFCDMCKF--SKRAGGSSRRV----EQECILCPEKGGAMKRTT-------DGRWAHITCALWVPNAQFL 105          
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: A0A7J7QJJ8_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QJJ8_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 1.950e-12
Identity = 46/120 (38.33%), Postives = 55/120 (45.83%), Query Frame = 0
Query:  456 RPFQDMELDDRACCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVN 575
            +P Q     DR CC C S   +D D LV CDGCGV VH+ CYGI  +PE D  W C  C  +              AP+P+C LC    G +KP            WAH  C  W P+V 
Sbjct:  561 KPIQVRWAGDR-CCVCDSDVDYDCDRLVSCDGCGVTVHQSCYGIPELPEEDDMWLCRACELK-----------EPGAPEPQCCLCPLVGGGLKPTTLP------GLWAHAACMQWIPEVT 662          
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: A0A662WMH0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMH0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.380e-12
Identity = 53/141 (37.59%), Postives = 64/141 (45.39%), Query Frame = 0
Query:  436 FGMVPGNGRGWAPPEP-EPGARPFQDMELDDRACCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVN 575
             G VP   R   P  P   G +     E +D +C  C    S+DDD +V CDGC VAVH+ CYGI+ VP G   W C  C    A   AS         +PRC LC  R GA K  A         +W HV C  W P++ 
Sbjct: 1374 LGPVPAAPRDETPQLPAHVGRKESNAEEAEDESCSICRESESYDDDPIVFCDGCSVAVHQFCYGIRVVPSGK--WFCEVCAEASAGAGASRSS------QPRCHLCPLRGGAFKRTACG-------RWVHVQCFLWIPELE 1499          
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: A0A8J5XAH8_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XAH8_DIALT)

HSP 1 Score: 80.9 bits (198), Expect = 3.740e-12
Identity = 51/138 (36.96%), Postives = 64/138 (46.38%), Query Frame = 0
Query:  468 CCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHG--WGGKAQWAHVLCAWWDPDVN-------------RLLVNVTLLLGCTSC 590
            CC C SG S +D+ +V C GC +AVH+ CY + +VPEGD  W C  C    A+ A           + RCA+C    GA K   R  G  WGG   W HVLCA W P +               +L+   L L C  C
Sbjct:  317 CCVCGSGESEEDNLIVFCAGCQLAVHQVCYAVASVPEGD--WLCDRCALGPAEAA-----------RVRCAVCPSARGAFK---RTEGGRWGG---WMHVLCAQWIPGLGFRKADTLEAAAGVDVLLPARLKLSCALC 435          
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: A0A7S0DPL2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DPL2_9EUKA)

HSP 1 Score: 80.9 bits (198), Expect = 4.570e-12
Identity = 45/118 (38.14%), Postives = 59/118 (50.00%), Query Frame = 0
Query:  460 DMELDDRACCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVNRL 577
            D ELDDR C  C S  + D+D ++ CDGC VAVH+ CYG+  +PEG+  W C  C  +LA                +C LCC + GA K          K +W H  CA+W P+   L
Sbjct:   83 DDELDDR-CNICFSAEADDEDLIIYCDGCDVAVHQLCYGVPKIPEGE--WLCRKCEAKLADSDV------------KCFLCCTKGGAFKKDL-------KGRWVHCACAYWLPETYFL 178          
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: UPI000719DA46 (protein Jade-1-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719DA46)

HSP 1 Score: 81.3 bits (199), Expect = 4.890e-12
Identity = 43/112 (38.39%), Postives = 54/112 (48.21%), Query Frame = 0
Query:  464 DDRACCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVN 575
            DD  C  C S    + + +V CDGC +AVH+ CYGIQ +P GD  W C  C   +               +P+C  C QR GAMKP           +WAHV CA W P+V 
Sbjct:  211 DDTICTVCRSPDYEEGNEMVFCDGCDIAVHQACYGIQVIPPGD--WLCRCCALGI---------------RPQCMFCPQRGGAMKPTKSG------TKWAHVSCALWIPEVR 299          
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: A0A4D9CXG7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXG7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 5.060e-12
Identity = 84/269 (31.23%), Postives = 111/269 (41.26%), Query Frame = 0
Query:  468 CCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLA---KRAASXXXXXXXAPKP---------RCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDP-----DVNRLLVNVTLLLGCTSCVPGVVCVTQVLHED---TVVEPMVFNKPPAPARTTMCFDQRGCLRAAAPFDIQIYETYCAAHQHCRADAGAVVAALRRACVHATPHALLAKNAALVALVEKKLAAPPGDPNAYPDFVAFERHIRAVAAE 716
            C  C    S +D+A+V CDGC VAVH+RCYG+ A P G   W C  C ++ A   K AA+       AP            C  C Q  GAMK      G   K  W HV+C   DP     D NRL V   L+       P    +  + H+    TV  P    K    AR   C  + G +   A F   +   YC  H+  R D  ++V+        A P    +   ALV  +E+KL+   G   AY +  AF R +  +  E
Sbjct:  992 CDVCGRNDSMEDNAMVLCDGCHVAVHQRCYGLPAAPRG--MWFCEKCKWEKANDFKSAAAAPPPEEGAPASITPTSFPPIACHFCGQTSGAMK------GSRDKRLWGHVVCVRHDPEAFFQDPNRLAV---LVFHRFKTSPSRTKLCGICHDAGGLTVPCPWPECKTQVHAR---CAQRHGLVHLDASFGHALPLIYCPDHESRRLDPFSLVSL-------AKPALAGSAGRALVQAMEEKLS---GQGTAYEEVDAFGRDLAGIVEE 1236          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CA75_9STRA0.000e+0100.00PHD-type domain-containing protein n=1 Tax=Tribone... [more]
A0A2P6NNA0_9EUKA4.980e-1437.29Peregrin-like n=1 Tax=Planoprotostelium fungivorum... [more]
A0A8C4Z4D3_GADMO9.760e-1341.07Jade family PHD finger 1 n=1 Tax=Gadus morhua TaxI... [more]
R1DEX7_EMIHU1.000e-1237.72Uncharacterized protein (Fragment) n=1 Tax=Emilian... [more]
A0A7J7QJJ8_9CHLO1.950e-1238.33Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A662WMH0_9STRA3.380e-1237.59Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A8J5XAH8_DIALT3.740e-1236.96Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S0DPL2_9EUKA4.570e-1238.14Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
UPI000719DA464.890e-1238.39protein Jade-1-like n=1 Tax=Priapulus caudatus Tax... [more]
A0A4D9CXG7_9STRA5.060e-1231.23Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 467..515
e-value: 2.5E-5
score: 33.7
NoneNo IPR availablePFAMPF13831PHD_2coord: 480..515
e-value: 1.4E-9
score: 37.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 318..362
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 348..362
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availablePANTHERPTHR13793PHD FINGER PROTEINScoord: 373..574
NoneNo IPR availableCDDcd15492PHD_BRPF_JADE_likecoord: 467..514
e-value: 1.00434E-16
score: 72.2675
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 456..519
e-value: 6.1E-14
score: 53.4
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 468..514
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 465..517
score: 9.0272
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 455..519

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_64contigContig_64:257155..264970 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350483mRNA_10107Tribonema minus UTEX_B_3156 mRNAContig_64 257155..265135 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350483|estExt_Genemark1.C_Ctg_640035 ID=Trimin1|350483|estExt_Genemark1.C_Ctg_640035|Name=jgi.p|Trimin1|350483|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=737bp
MLLGGSLPPQSRDLSAQDTQPRAAEALPEPAGAARAAAPAAIPAVAVAAA
AAALLLEHQQQQQQQPTHAAAAPTPALSAQQTASASLPVLEAAAPAAAPA
AACALEAPRLVPTSTVEGAPAAVAGPPQEAPPSPLLDRVSQLMAAAQSLA
APAQTGGLAVAAAAAAAAVVQPHRSNGLMGVLPPAATAAALSQCSAAGTL
PLAAAAASASAAGAPSLLAPVHHCHVRGTLLRLRHAARELLPAEGAGAVA
AALDGVEGALTCTPELKDFGENVQAALSAAGGGVWEALQCEFEEAMHALS
LQFRAQWRFKRKRGAEAAEEEEGGAGGGLDLINGALPHSGHSPNARSGAA
DPASTYSSGASTSGSRARSAKAVAARRAATAAAAAAAQAQAAADAAWAAL
ARTQPPPAAAQAAAAAPRRRARCAWRMRRRLPVDGFGMVPGNGRGWAPPE
PEPGARPFQDMELDDRACCACSSGHSHDDDALVGCDGCGVAVHERCYGIQ
AVPEGDLPWCCAPCTFQLAKRAASSAAAAAAAPKPRCALCCQRFGAMKPL
ARAHGWGGKAQWAHVLCAWWDPDVNRLLVNVTLLLGCTSCVPGVVCVTQV
LHEDTVVEPMVFNKPPAPARTTMCFDQRGCLRAAAPFDIQIYETYCAAHQ
HCRADAGAVVAALRRACVHATPHALLAKNAALVALVEKKLAAPPGDPNAY
PDFVAFERHIRAVAAEAELWDDVTDILQALRKHMTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD